Ggra6613.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6613.t1
Unique NameGgra6613.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:581929..583500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008868388.1
PFAMsAAA,BCS1_N
Max annot lvl2759|Eukaryota
KEGG koko:K08900
Evalue1.14e-47
EggNOG OGsCOG0465@1|root,KOG0743@2759|Eukaryota
Descriptionrespiratory chain complex III assembly
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6613Ggra6613Gracilaria gracilis GNS1m malegenetig00000081_pilon 581929..583500 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6613.t1.start1Ggra6613.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 581929..581931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6613.t1.CDS1Ggra6613.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 581929..583500 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6613.t1.exon1Ggra6613.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 581929..583500 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6613.t1.stop1Ggra6613.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 583498..583500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6613.t1Ggra6613.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 581929..583500 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6613.t1 ID=Ggra6613.t1|Name=Ggra6613.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MFSINPSSQDRSPVLQANTSHLPAPFLSSIAATLGVSLSDLCTFTASTCT
QLFQAINTYASHYPRPTNLRQPLRWNVNEQYTGIGDEVTGQSIQLYERYD
DGEMGPCNPSQAPPRKKKKIETDLYIGLNFSFDLGETLILWPPEPHLEAK
ALKAGFKEKGLNILEQAAARPGIVYDESRHTVLHLTKYEISSFDGTNEYF
HVAAAAGELRMKKFAYEVLNWAAKIKPFSPKLGTFGLHQFIVQDHHGSWM
SKGRRFSRDAQSVILPKGCMDDILEDVGHFLEPSTKAWFSKHGLPYKRNY
LFFGTPGTGKTSTIRVIAGVFGLNCAFLSTTDSNFSNQLLFEALTTLPRN
TILIIEDVDSMFNKNRENEANNSLSYSGLLNALDGITSMEGVITIMTTNH
FERLDQALIRGGRVDKRVLFSPPSHEQIELLFKRFYPDASGEQTKFFCTK
VFSRSEGKEAQSISTLQQFFVRNRDKTAGECLGTIEEFYGVYFTEKQQTE
EAKRIFSKDRNSGPSDVPEFDEF*
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spliced messenger RNA

>Ggra6613.t1 ID=Ggra6613.t1|Name=Ggra6613.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000081_pilon:581929..583500+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCCATCAACCCAAGTTCCCAGGATCGCTCCCCGGTTCTTCAGGC
AAATACATCCCATCTTCCTGCCCCCTTTCTTTCCAGCATAGCCGCCACGC
TCGGTGTTTCGCTCAGTGACCTCTGCACCTTCACTGCTTCCACGTGCACA
CAACTCTTCCAGGCCATAAACACGTATGCATCACACTATCCTCGCCCTAC
CAATCTCCGACAACCTCTCCGGTGGAACGTCAACGAGCAATACACTGGGA
TTGGGGATGAGGTCACGGGACAGTCTATTCAACTATATGAACGTTACGAT
GACGGTGAAATGGGACCCTGCAACCCCTCACAAGCACCGCCACGAAAAAA
AAAGAAGATTGAGACTGATCTTTATATCGGTCTCAACTTCAGCTTTGATC
TAGGAGAGACCTTAATTCTATGGCCACCCGAACCACACCTTGAGGCTAAA
GCCCTGAAGGCAGGTTTCAAAGAGAAGGGTCTCAATATTCTTGAGCAGGC
AGCTGCACGACCTGGTATAGTCTATGATGAATCAAGGCACACTGTTCTTC
ACCTGACGAAGTATGAAATCTCGTCTTTCGACGGTACTAATGAGTACTTT
CACGTCGCCGCAGCCGCAGGGGAGCTGAGAATGAAGAAGTTTGCCTACGA
GGTGTTAAATTGGGCGGCGAAGATAAAGCCTTTTAGTCCAAAACTTGGCA
CTTTCGGCCTTCACCAGTTCATTGTTCAAGACCATCATGGTTCATGGATG
AGCAAAGGGCGACGATTTTCTCGTGATGCTCAATCGGTAATTCTACCGAA
GGGATGCATGGATGATATCCTTGAAGACGTTGGCCATTTTCTCGAGCCTT
CCACAAAGGCGTGGTTCTCGAAACATGGGCTTCCGTACAAGAGGAACTAT
CTTTTCTTTGGAACTCCAGGTACAGGAAAAACCAGCACTATACGAGTTAT
TGCAGGTGTATTTGGATTGAACTGTGCATTTCTTAGCACCACGGACTCCA
ACTTCAGTAACCAACTACTTTTCGAGGCATTGACGACGCTTCCGAGAAAC
ACTATTCTAATAATCGAAGACGTAGATTCCATGTTCAACAAGAATCGAGA
GAATGAGGCAAACAACTCGCTGAGCTATTCAGGTCTTCTAAATGCACTGG
ACGGGATAACTAGCATGGAAGGGGTGATCACAATAATGACAACCAACCAC
TTTGAAAGACTTGATCAGGCACTGATCCGAGGTGGTCGCGTAGATAAACG
CGTCCTCTTCTCACCACCCTCTCATGAACAAATTGAATTATTATTCAAGA
GGTTCTATCCTGACGCATCTGGTGAACAGACGAAATTCTTTTGCACCAAA
GTATTTTCTCGTTCGGAAGGGAAAGAGGCGCAAAGTATTTCGACTTTGCA
ACAGTTTTTCGTTCGCAATCGCGACAAAACCGCGGGCGAGTGTCTTGGGA
CAATAGAAGAATTTTACGGTGTGTACTTCACCGAAAAGCAGCAGACCGAA
GAAGCAAAGCGCATATTCAGCAAAGATCGGAATAGTGGACCCTCAGATGT
TCCTGAGTTCGATGAATTTTAG
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protein sequence of Ggra6613.t1

>Ggra6613.t1 ID=Ggra6613.t1|Name=Ggra6613.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MFSINPSSQDRSPVLQANTSHLPAPFLSSIAATLGVSLSDLCTFTASTCT
QLFQAINTYASHYPRPTNLRQPLRWNVNEQYTGIGDEVTGQSIQLYERYD
DGEMGPCNPSQAPPRKKKKIETDLYIGLNFSFDLGETLILWPPEPHLEAK
ALKAGFKEKGLNILEQAAARPGIVYDESRHTVLHLTKYEISSFDGTNEYF
HVAAAAGELRMKKFAYEVLNWAAKIKPFSPKLGTFGLHQFIVQDHHGSWM
SKGRRFSRDAQSVILPKGCMDDILEDVGHFLEPSTKAWFSKHGLPYKRNY
LFFGTPGTGKTSTIRVIAGVFGLNCAFLSTTDSNFSNQLLFEALTTLPRN
TILIIEDVDSMFNKNRENEANNSLSYSGLLNALDGITSMEGVITIMTTNH
FERLDQALIRGGRVDKRVLFSPPSHEQIELLFKRFYPDASGEQTKFFCTK
VFSRSEGKEAQSISTLQQFFVRNRDKTAGECLGTIEEFYGVYFTEKQQTE
EAKRIFSKDRNSGPSDVPEFDEF*
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mRNA from alignment at tig00000081_pilon:581929..583500+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6613.t1 ID=Ggra6613.t1|Name=Ggra6613.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000081_pilon:581929..583500+ (Gracilaria gracilis GNS1m male)
ATGTTCTCCATCAACCCAAGTTCCCAGGATCGCTCCCCGGTTCTTCAGGC
AAATACATCCCATCTTCCTGCCCCCTTTCTTTCCAGCATAGCCGCCACGC
TCGGTGTTTCGCTCAGTGACCTCTGCACCTTCACTGCTTCCACGTGCACA
CAACTCTTCCAGGCCATAAACACGTATGCATCACACTATCCTCGCCCTAC
CAATCTCCGACAACCTCTCCGGTGGAACGTCAACGAGCAATACACTGGGA
TTGGGGATGAGGTCACGGGACAGTCTATTCAACTATATGAACGTTACGAT
GACGGTGAAATGGGACCCTGCAACCCCTCACAAGCACCGCCACGAAAAAA
AAAGAAGATTGAGACTGATCTTTATATCGGTCTCAACTTCAGCTTTGATC
TAGGAGAGACCTTAATTCTATGGCCACCCGAACCACACCTTGAGGCTAAA
GCCCTGAAGGCAGGTTTCAAAGAGAAGGGTCTCAATATTCTTGAGCAGGC
AGCTGCACGACCTGGTATAGTCTATGATGAATCAAGGCACACTGTTCTTC
ACCTGACGAAGTATGAAATCTCGTCTTTCGACGGTACTAATGAGTACTTT
CACGTCGCCGCAGCCGCAGGGGAGCTGAGAATGAAGAAGTTTGCCTACGA
GGTGTTAAATTGGGCGGCGAAGATAAAGCCTTTTAGTCCAAAACTTGGCA
CTTTCGGCCTTCACCAGTTCATTGTTCAAGACCATCATGGTTCATGGATG
AGCAAAGGGCGACGATTTTCTCGTGATGCTCAATCGGTAATTCTACCGAA
GGGATGCATGGATGATATCCTTGAAGACGTTGGCCATTTTCTCGAGCCTT
CCACAAAGGCGTGGTTCTCGAAACATGGGCTTCCGTACAAGAGGAACTAT
CTTTTCTTTGGAACTCCAGGTACAGGAAAAACCAGCACTATACGAGTTAT
TGCAGGTGTATTTGGATTGAACTGTGCATTTCTTAGCACCACGGACTCCA
ACTTCAGTAACCAACTACTTTTCGAGGCATTGACGACGCTTCCGAGAAAC
ACTATTCTAATAATCGAAGACGTAGATTCCATGTTCAACAAGAATCGAGA
GAATGAGGCAAACAACTCGCTGAGCTATTCAGGTCTTCTAAATGCACTGG
ACGGGATAACTAGCATGGAAGGGGTGATCACAATAATGACAACCAACCAC
TTTGAAAGACTTGATCAGGCACTGATCCGAGGTGGTCGCGTAGATAAACG
CGTCCTCTTCTCACCACCCTCTCATGAACAAATTGAATTATTATTCAAGA
GGTTCTATCCTGACGCATCTGGTGAACAGACGAAATTCTTTTGCACCAAA
GTATTTTCTCGTTCGGAAGGGAAAGAGGCGCAAAGTATTTCGACTTTGCA
ACAGTTTTTCGTTCGCAATCGCGACAAAACCGCGGGCGAGTGTCTTGGGA
CAATAGAAGAATTTTACGGTGTGTACTTCACCGAAAAGCAGCAGACCGAA
GAAGCAAAGCGCATATTCAGCAAAGATCGGAATAGTGGACCCTCAGATGT
TCCTGAGTTCGATGAATTTTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:581929..583500+

>Ggra6613.t1 ID=Ggra6613.t1|Name=Ggra6613.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000081_pilon:581929..583500+ (Gracilaria gracilis GNS1m male)
ATGTTCTCCATCAACCCAAGTTCCCAGGATCGCTCCCCGGTTCTTCAGGC
AAATACATCCCATCTTCCTGCCCCCTTTCTTTCCAGCATAGCCGCCACGC
TCGGTGTTTCGCTCAGTGACCTCTGCACCTTCACTGCTTCCACGTGCACA
CAACTCTTCCAGGCCATAAACACGTATGCATCACACTATCCTCGCCCTAC
CAATCTCCGACAACCTCTCCGGTGGAACGTCAACGAGCAATACACTGGGA
TTGGGGATGAGGTCACGGGACAGTCTATTCAACTATATGAACGTTACGAT
GACGGTGAAATGGGACCCTGCAACCCCTCACAAGCACCGCCACGAAAAAA
AAAGAAGATTGAGACTGATCTTTATATCGGTCTCAACTTCAGCTTTGATC
TAGGAGAGACCTTAATTCTATGGCCACCCGAACCACACCTTGAGGCTAAA
GCCCTGAAGGCAGGTTTCAAAGAGAAGGGTCTCAATATTCTTGAGCAGGC
AGCTGCACGACCTGGTATAGTCTATGATGAATCAAGGCACACTGTTCTTC
ACCTGACGAAGTATGAAATCTCGTCTTTCGACGGTACTAATGAGTACTTT
CACGTCGCCGCAGCCGCAGGGGAGCTGAGAATGAAGAAGTTTGCCTACGA
GGTGTTAAATTGGGCGGCGAAGATAAAGCCTTTTAGTCCAAAACTTGGCA
CTTTCGGCCTTCACCAGTTCATTGTTCAAGACCATCATGGTTCATGGATG
AGCAAAGGGCGACGATTTTCTCGTGATGCTCAATCGGTAATTCTACCGAA
GGGATGCATGGATGATATCCTTGAAGACGTTGGCCATTTTCTCGAGCCTT
CCACAAAGGCGTGGTTCTCGAAACATGGGCTTCCGTACAAGAGGAACTAT
CTTTTCTTTGGAACTCCAGGTACAGGAAAAACCAGCACTATACGAGTTAT
TGCAGGTGTATTTGGATTGAACTGTGCATTTCTTAGCACCACGGACTCCA
ACTTCAGTAACCAACTACTTTTCGAGGCATTGACGACGCTTCCGAGAAAC
ACTATTCTAATAATCGAAGACGTAGATTCCATGTTCAACAAGAATCGAGA
GAATGAGGCAAACAACTCGCTGAGCTATTCAGGTCTTCTAAATGCACTGG
ACGGGATAACTAGCATGGAAGGGGTGATCACAATAATGACAACCAACCAC
TTTGAAAGACTTGATCAGGCACTGATCCGAGGTGGTCGCGTAGATAAACG
CGTCCTCTTCTCACCACCCTCTCATGAACAAATTGAATTATTATTCAAGA
GGTTCTATCCTGACGCATCTGGTGAACAGACGAAATTCTTTTGCACCAAA
GTATTTTCTCGTTCGGAAGGGAAAGAGGCGCAAAGTATTTCGACTTTGCA
ACAGTTTTTCGTTCGCAATCGCGACAAAACCGCGGGCGAGTGTCTTGGGA
CAATAGAAGAATTTTACGGTGTGTACTTCACCGAAAAGCAGCAGACCGAA
GAAGCAAAGCGCATATTCAGCAAAGATCGGAATAGTGGACCCTCAGATGT
TCCTGAGTTCGATGAATTTTAG
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