Ggra6611.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6611.t1
Unique NameGgra6611.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:567652..569412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009357703.1
PFAMsAnticodon_1,tRNA-synt_1g
Max annot lvl35493|Streptophyta
KEGG rclassRC00055,RC00523
KEGG koko:K01874
KEGG ReactionR03659,R04773
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034660,GO:0035670,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0090567,GO:0099402,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue3.15e-217
EggNOG OGsCOG0143@1|root,KOG0436@2759|Eukaryota,37PE4@33090|Viridiplantae,3GFZ4@35493|Streptophyta,4JNE9@91835|fabids
EC6.1.1.10
DescriptionBelongs to the class-I aminoacyl-tRNA synthetase family
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6611Ggra6611Gracilaria gracilis GNS1m malegenetig00000081_pilon 567652..569412 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6611.t1.stop1Ggra6611.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 567652..567654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6611.t1.CDS1Ggra6611.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 567652..569412 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6611.t1.exon1Ggra6611.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 567652..569412 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6611.t1.start1Ggra6611.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 569410..569412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6611.t1Ggra6611.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 567652..569412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6611.t1 ID=Ggra6611.t1|Name=Ggra6611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MEPAFAPALALRSSIRSRFLRCNPSRSLLFTRSIRTRRRAVACATPPALA
GQKLVITTPLFYVNAPPHMGSAYPTLAADALARFYTMAGASATFVTGTDE
HGEKIASAAAASAATGDGRSTQAFCDDVAEQFKQLWSQMNVKYDRFVRTT
SGHHQVVVREFMERVWANGDIYKSDYEGLYCTGCEEYKDHKDLLPRNICP
THQTTCFNRKEDNYFFALSKYQDSLETFLEDNPYFVQPLERRNEVLGWVK
SGIRDFSVSRANNPWGIPVPRDDNQTIYVWFDALVGYLSALLQDTDQPSL
HQLSTRGWPADVHIIGKDILRFHAVYWPAMLMSAGLPLPRRVIGHGFITK
DGMKMGKSLGNTLDPCQLVDSYGSDAVRYYFLRALDFGKDGDFSEQRFVD
VVNADLANSFGNLLNRSLNLLKKNCSSTLPICSSQLGLSDADEDEKVLRQ
TAEHAYKEAYAQYEALNFNAACEALMSISFEANAYIDRVAPWTKFKSQDA
EDIRMAQRCIVNVLEASRIVAVGLNPVVPQVSYKVYSAFGLADEYEQGLT
WEQMKWGKLKEGMSFAKPKPVFPRLELVVPQAAVVS*
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spliced messenger RNA

>Ggra6611.t1 ID=Ggra6611.t1|Name=Ggra6611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000081_pilon:567652..569412- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGCATTCGCCCCGGCGCTAGCGTTACGCTCCTCGATACGAAG
CCGCTTCTTAAGATGTAACCCAAGCCGCTCGCTCCTCTTCACGCGCTCCA
TTCGCACGCGCCGTCGCGCCGTCGCATGCGCCACCCCACCCGCTCTGGCT
GGCCAGAAGCTTGTCATCACTACGCCCTTGTTCTACGTCAATGCGCCGCC
TCACATGGGATCGGCGTATCCCACGTTGGCTGCGGATGCGCTTGCCAGGT
TTTATACAATGGCGGGCGCTAGTGCCACCTTTGTTACTGGTACTGATGAA
CATGGTGAGAAGATTGCGTCCGCGGCCGCAGCGTCAGCCGCTACTGGGGA
TGGGCGCTCCACACAAGCTTTTTGTGACGACGTTGCGGAGCAGTTCAAAC
AGCTTTGGAGTCAGATGAATGTCAAGTACGATCGCTTTGTTCGTACCACT
TCGGGCCATCATCAAGTGGTTGTGCGTGAGTTTATGGAGAGAGTGTGGGC
GAATGGTGATATATACAAGAGCGACTATGAGGGCTTATATTGTACTGGAT
GTGAAGAATACAAAGATCACAAAGACTTATTACCTAGAAACATTTGTCCA
ACTCATCAAACTACGTGTTTCAATCGCAAGGAGGACAACTATTTCTTTGC
ATTGTCAAAGTACCAGGATAGTTTGGAGACTTTCTTAGAGGATAACCCTT
ACTTTGTGCAACCATTGGAAAGAAGAAACGAGGTTTTGGGGTGGGTCAAG
AGTGGAATTCGTGATTTCAGTGTTTCAAGAGCTAACAATCCTTGGGGCAT
TCCTGTGCCACGTGACGACAACCAGACTATTTATGTATGGTTTGATGCGC
TCGTTGGTTATCTTAGTGCTTTATTACAAGATACCGATCAACCCTCGCTG
CACCAACTTTCCACCCGTGGATGGCCAGCAGATGTTCACATTATTGGCAA
GGACATTTTGCGTTTTCATGCCGTGTACTGGCCCGCAATGCTCATGTCTG
CTGGGCTGCCGTTGCCAAGAAGAGTGATAGGACACGGCTTTATCACAAAG
GATGGCATGAAAATGGGCAAGAGTCTTGGCAACACCCTCGATCCTTGTCA
ACTAGTCGACTCTTATGGAAGCGATGCTGTACGCTACTACTTTTTGAGGG
CGCTGGACTTTGGAAAAGATGGTGACTTTTCGGAACAGCGCTTTGTGGAT
GTTGTCAATGCAGATCTGGCAAATTCGTTTGGCAACTTGTTGAACAGGTC
ATTGAATTTGCTCAAGAAGAACTGTTCCAGTACTTTGCCAATTTGCTCCT
CACAATTGGGATTGTCGGATGCGGATGAGGACGAGAAGGTTTTGCGACAA
ACAGCTGAGCATGCCTACAAGGAAGCATATGCTCAGTACGAAGCACTCAA
TTTTAATGCGGCATGTGAGGCGCTCATGTCTATATCGTTTGAAGCCAATG
CCTACATAGATCGCGTTGCCCCGTGGACAAAATTCAAATCACAAGATGCA
GAGGATATTCGAATGGCCCAAAGATGCATTGTAAACGTGTTGGAAGCATC
CAGGATTGTTGCTGTAGGGTTGAATCCAGTTGTACCACAAGTTTCGTACA
AGGTTTATTCCGCTTTTGGCCTTGCAGATGAATATGAGCAGGGATTAACT
TGGGAGCAAATGAAATGGGGAAAGTTGAAGGAAGGAATGTCGTTTGCAAA
GCCAAAGCCAGTGTTTCCAAGACTCGAACTTGTCGTGCCACAAGCTGCAG
TTGTTTCATAA
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protein sequence of Ggra6611.t1

>Ggra6611.t1 ID=Ggra6611.t1|Name=Ggra6611.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MEPAFAPALALRSSIRSRFLRCNPSRSLLFTRSIRTRRRAVACATPPALA
GQKLVITTPLFYVNAPPHMGSAYPTLAADALARFYTMAGASATFVTGTDE
HGEKIASAAAASAATGDGRSTQAFCDDVAEQFKQLWSQMNVKYDRFVRTT
SGHHQVVVREFMERVWANGDIYKSDYEGLYCTGCEEYKDHKDLLPRNICP
THQTTCFNRKEDNYFFALSKYQDSLETFLEDNPYFVQPLERRNEVLGWVK
SGIRDFSVSRANNPWGIPVPRDDNQTIYVWFDALVGYLSALLQDTDQPSL
HQLSTRGWPADVHIIGKDILRFHAVYWPAMLMSAGLPLPRRVIGHGFITK
DGMKMGKSLGNTLDPCQLVDSYGSDAVRYYFLRALDFGKDGDFSEQRFVD
VVNADLANSFGNLLNRSLNLLKKNCSSTLPICSSQLGLSDADEDEKVLRQ
TAEHAYKEAYAQYEALNFNAACEALMSISFEANAYIDRVAPWTKFKSQDA
EDIRMAQRCIVNVLEASRIVAVGLNPVVPQVSYKVYSAFGLADEYEQGLT
WEQMKWGKLKEGMSFAKPKPVFPRLELVVPQAAVVS*
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mRNA from alignment at tig00000081_pilon:567652..569412-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6611.t1 ID=Ggra6611.t1|Name=Ggra6611.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000081_pilon:567652..569412- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGCATTCGCCCCGGCGCTAGCGTTACGCTCCTCGATACGAAG
CCGCTTCTTAAGATGTAACCCAAGCCGCTCGCTCCTCTTCACGCGCTCCA
TTCGCACGCGCCGTCGCGCCGTCGCATGCGCCACCCCACCCGCTCTGGCT
GGCCAGAAGCTTGTCATCACTACGCCCTTGTTCTACGTCAATGCGCCGCC
TCACATGGGATCGGCGTATCCCACGTTGGCTGCGGATGCGCTTGCCAGGT
TTTATACAATGGCGGGCGCTAGTGCCACCTTTGTTACTGGTACTGATGAA
CATGGTGAGAAGATTGCGTCCGCGGCCGCAGCGTCAGCCGCTACTGGGGA
TGGGCGCTCCACACAAGCTTTTTGTGACGACGTTGCGGAGCAGTTCAAAC
AGCTTTGGAGTCAGATGAATGTCAAGTACGATCGCTTTGTTCGTACCACT
TCGGGCCATCATCAAGTGGTTGTGCGTGAGTTTATGGAGAGAGTGTGGGC
GAATGGTGATATATACAAGAGCGACTATGAGGGCTTATATTGTACTGGAT
GTGAAGAATACAAAGATCACAAAGACTTATTACCTAGAAACATTTGTCCA
ACTCATCAAACTACGTGTTTCAATCGCAAGGAGGACAACTATTTCTTTGC
ATTGTCAAAGTACCAGGATAGTTTGGAGACTTTCTTAGAGGATAACCCTT
ACTTTGTGCAACCATTGGAAAGAAGAAACGAGGTTTTGGGGTGGGTCAAG
AGTGGAATTCGTGATTTCAGTGTTTCAAGAGCTAACAATCCTTGGGGCAT
TCCTGTGCCACGTGACGACAACCAGACTATTTATGTATGGTTTGATGCGC
TCGTTGGTTATCTTAGTGCTTTATTACAAGATACCGATCAACCCTCGCTG
CACCAACTTTCCACCCGTGGATGGCCAGCAGATGTTCACATTATTGGCAA
GGACATTTTGCGTTTTCATGCCGTGTACTGGCCCGCAATGCTCATGTCTG
CTGGGCTGCCGTTGCCAAGAAGAGTGATAGGACACGGCTTTATCACAAAG
GATGGCATGAAAATGGGCAAGAGTCTTGGCAACACCCTCGATCCTTGTCA
ACTAGTCGACTCTTATGGAAGCGATGCTGTACGCTACTACTTTTTGAGGG
CGCTGGACTTTGGAAAAGATGGTGACTTTTCGGAACAGCGCTTTGTGGAT
GTTGTCAATGCAGATCTGGCAAATTCGTTTGGCAACTTGTTGAACAGGTC
ATTGAATTTGCTCAAGAAGAACTGTTCCAGTACTTTGCCAATTTGCTCCT
CACAATTGGGATTGTCGGATGCGGATGAGGACGAGAAGGTTTTGCGACAA
ACAGCTGAGCATGCCTACAAGGAAGCATATGCTCAGTACGAAGCACTCAA
TTTTAATGCGGCATGTGAGGCGCTCATGTCTATATCGTTTGAAGCCAATG
CCTACATAGATCGCGTTGCCCCGTGGACAAAATTCAAATCACAAGATGCA
GAGGATATTCGAATGGCCCAAAGATGCATTGTAAACGTGTTGGAAGCATC
CAGGATTGTTGCTGTAGGGTTGAATCCAGTTGTACCACAAGTTTCGTACA
AGGTTTATTCCGCTTTTGGCCTTGCAGATGAATATGAGCAGGGATTAACT
TGGGAGCAAATGAAATGGGGAAAGTTGAAGGAAGGAATGTCGTTTGCAAA
GCCAAAGCCAGTGTTTCCAAGACTCGAACTTGTCGTGCCACAAGCTGCAG
TTGTTTCATAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:567652..569412-

>Ggra6611.t1 ID=Ggra6611.t1|Name=Ggra6611.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000081_pilon:567652..569412- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGCATTCGCCCCGGCGCTAGCGTTACGCTCCTCGATACGAAG
CCGCTTCTTAAGATGTAACCCAAGCCGCTCGCTCCTCTTCACGCGCTCCA
TTCGCACGCGCCGTCGCGCCGTCGCATGCGCCACCCCACCCGCTCTGGCT
GGCCAGAAGCTTGTCATCACTACGCCCTTGTTCTACGTCAATGCGCCGCC
TCACATGGGATCGGCGTATCCCACGTTGGCTGCGGATGCGCTTGCCAGGT
TTTATACAATGGCGGGCGCTAGTGCCACCTTTGTTACTGGTACTGATGAA
CATGGTGAGAAGATTGCGTCCGCGGCCGCAGCGTCAGCCGCTACTGGGGA
TGGGCGCTCCACACAAGCTTTTTGTGACGACGTTGCGGAGCAGTTCAAAC
AGCTTTGGAGTCAGATGAATGTCAAGTACGATCGCTTTGTTCGTACCACT
TCGGGCCATCATCAAGTGGTTGTGCGTGAGTTTATGGAGAGAGTGTGGGC
GAATGGTGATATATACAAGAGCGACTATGAGGGCTTATATTGTACTGGAT
GTGAAGAATACAAAGATCACAAAGACTTATTACCTAGAAACATTTGTCCA
ACTCATCAAACTACGTGTTTCAATCGCAAGGAGGACAACTATTTCTTTGC
ATTGTCAAAGTACCAGGATAGTTTGGAGACTTTCTTAGAGGATAACCCTT
ACTTTGTGCAACCATTGGAAAGAAGAAACGAGGTTTTGGGGTGGGTCAAG
AGTGGAATTCGTGATTTCAGTGTTTCAAGAGCTAACAATCCTTGGGGCAT
TCCTGTGCCACGTGACGACAACCAGACTATTTATGTATGGTTTGATGCGC
TCGTTGGTTATCTTAGTGCTTTATTACAAGATACCGATCAACCCTCGCTG
CACCAACTTTCCACCCGTGGATGGCCAGCAGATGTTCACATTATTGGCAA
GGACATTTTGCGTTTTCATGCCGTGTACTGGCCCGCAATGCTCATGTCTG
CTGGGCTGCCGTTGCCAAGAAGAGTGATAGGACACGGCTTTATCACAAAG
GATGGCATGAAAATGGGCAAGAGTCTTGGCAACACCCTCGATCCTTGTCA
ACTAGTCGACTCTTATGGAAGCGATGCTGTACGCTACTACTTTTTGAGGG
CGCTGGACTTTGGAAAAGATGGTGACTTTTCGGAACAGCGCTTTGTGGAT
GTTGTCAATGCAGATCTGGCAAATTCGTTTGGCAACTTGTTGAACAGGTC
ATTGAATTTGCTCAAGAAGAACTGTTCCAGTACTTTGCCAATTTGCTCCT
CACAATTGGGATTGTCGGATGCGGATGAGGACGAGAAGGTTTTGCGACAA
ACAGCTGAGCATGCCTACAAGGAAGCATATGCTCAGTACGAAGCACTCAA
TTTTAATGCGGCATGTGAGGCGCTCATGTCTATATCGTTTGAAGCCAATG
CCTACATAGATCGCGTTGCCCCGTGGACAAAATTCAAATCACAAGATGCA
GAGGATATTCGAATGGCCCAAAGATGCATTGTAAACGTGTTGGAAGCATC
CAGGATTGTTGCTGTAGGGTTGAATCCAGTTGTACCACAAGTTTCGTACA
AGGTTTATTCCGCTTTTGGCCTTGCAGATGAATATGAGCAGGGATTAACT
TGGGAGCAAATGAAATGGGGAAAGTTGAAGGAAGGAATGTCGTTTGCAAA
GCCAAAGCCAGTGTTTCCAAGACTCGAACTTGTCGTGCCACAAGCTGCAG
TTGTTTCATAA
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