Ggra6606.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6606.t1
Unique NameGgra6606.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:545179..546909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704290.1
Preferred nameATPB
PFAMsATP-synt_ab,ATP-synt_ab_N,Synthase_beta
Max annot lvl2759|Eukaryota
KEGG koko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000166,GO:0000275,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005753,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008144,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0030554,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045261,GO:0045271,GO:0046034,GO:0046390,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0070013,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902600,GO:1990204
Evalue5e-288
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota
EC3.6.3.14
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6606Ggra6606Gracilaria gracilis GNS1m malegenetig00000081_pilon 545179..546909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1Ggra6606.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 545179..546909 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1.start1Ggra6606.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 545179..545181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1.CDS1Ggra6606.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 545179..545428 +
Ggra6606.t1.CDS2Ggra6606.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 545537..546909 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1.exon1Ggra6606.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 545179..545428 +
Ggra6606.t1.exon2Ggra6606.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 545537..546909 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1.intron1Ggra6606.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 545429..545536 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6606.t1.stop1Ggra6606.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 546907..546909 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6606.t1 ID=Ggra6606.t1|Name=Ggra6606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp
MLRLASSAGRIAGRAVRLLPRSAAPAAATASRRLAHAALAPTAPAAVKAS
PAAPAAAETDSSPAALPSGKISQVIGAVVDVHFESGTLPPILNALEVKDH
DIRLVLEVAQHLGENTVRAIAMDATEGLVRGQVVVDTGNPIMVPVGRETL
GRIINVIGEPIDERGPVKTDKFYPIHRDAPEFTDQDTTASILQTGIKVVD
LLAPYARGGKIGLFGGAGVGKTVFIMELINNIAKAHGGYSVFTGVGERTR
EGNDLYHEMIVSGVIKLDSDESKAALVYGQMNEPPGARARVGLTGLAIAE
YFRDEEGQDVLLFVDNIFRFTQANAEVSALLGRIPSAVGYQPTLATDLGG
LQERITTTRLGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAE
LGIYPAVDPLDSTSRMLSPLILGEEHYSVARSVQEILQSYKQLTDIIAIL
GMDELSEDDKLTVARARKVQRFLSQPFHVAEVFTGIDGRFVETEKTLAGF
KDLVAGSYDDLPENAFYMVGDIDEVISNARKMAADMEEAA*
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spliced messenger RNA

>Ggra6606.t1 ID=Ggra6606.t1|Name=Ggra6606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00000081_pilon:545179..546909+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGACTcgcctcctccgccggtcgcatcgccggtcgcgccgtgcg
tcttctcccgcgctccgccgccccggccgccgccaccgcGTCCCGTCGTC
TTGCGCATGCTGCTTTGGCTCCCACCGCTCCGGCTGCCGTCAAGGCTTCG
CCGGCCGCCCCGGCCGCCGCGGAGACCGATTCTTCTCCGGCCGCGCTGCC
TTCTGGCAAGATCTCCCAGGTCATTGGTGCCGTTGTCGATGTTCATTTCG
AGTCGGGTACTTTGCCGCCAATTTTGAATGCTTTGGAGGTTAAGGATCAT
GACATCCGTCTCGTTTTGGAGGTTGCGCAGCATTTGGGAGAGAATACCGT
GCGTGCCATTGCCATGGATGCCACCGAAGGTCTCGTCCGTGGCCAGGTCG
TCGTCGATACCGGCAACCCCATTATGGTTCCCGTCGGCCGTGAGACCCTC
GGCCGTATCATCAACGTTATCGGCGAACCCATTGACGAGCGCGGCCCCGT
CAAGACCGACAAATTCTATCCGATCCATCGTGATGCCCCAGAGTTTACCG
ATCAGGATACCACCGCCTCCATTCTTCAGACCGGTATCAAGGTCGTCGAT
CTGCTTGCACCGTACGCTCGTGGTGGTAAGATCGGTCTCTTCGGTGGTGC
CGGTGTAGGAAAGACTGTATTTATCATGGAACTCATCAACAATATTGCCA
AGGCACATGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGCGTACCCGC
GAGGGTAATGATCTCTACCACGAAATGATTGTATCTGGTGTCATCAAGCT
CGATAGCGATGAGTCTAAGGCCGCGCTTGTGTATGGTCAGATGAACGAAC
CACCAGGTGCTCGTGCCCGTGTCGGTCTCACTGGTCTCGCTATTGCCGAA
TATTTCCGTGACGAAGAGGGACAGGATGTGCTTCTGTTCGTCGACAATAT
CTTCCGCTTCACACAAGCTAACGCTGAGGTGTCTGCCCTTCTTGGTCGTA
TCCCATCTGCTGTGGGTTACCAACCGACTCTTGCTACGGATCTTGGTGGT
CTGCAAGAACGTATTACTACTACTCGTCTTGGATCTATCACATCTGTGCA
AGCAATCTATGTGCCAGCTGATGATCTGACAGATCCAGCCCCGGCTACCA
CTTTTGCGCATCTGGACGCCACTACTGTGCTTTCTCGCCAGATTGCCGAG
CTTGGAATTTACCCAGCAGTCGATCCGCTTGACTCCACATCTCGAATGCT
TTCGCCGCTCATTCTTGGAGAAGAGCACTACAGCGTCGCGCGTTCCGTTC
AGGAGATTCTTCAGTCATACAAGCAGCTCACTGATATTATTGCTATCCTT
GGTATGGATGAACTCAGTGAAGACGACAAGCTCACTGTCGCTCGTGCCCG
TAAGGTGCAACGTTTCCTCTCCCAACCATTCCATGTTGCTGAAGTGTTTA
CTGGTATTGATGGCCGCTTTGTCGAAACTGAAAAGACATTGGCTGGGTTC
AAGGATCTTGTTGCAGGTAGCTATGACGATCTGCCTGAGAATGCTTTCTA
TATGGTTGGCGACATCGATGAAGTTATTTCAAATGCTCGTAAGATGGCAG
CAGACATGGAAGAAGCCGCGTAG
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protein sequence of Ggra6606.t1

>Ggra6606.t1 ID=Ggra6606.t1|Name=Ggra6606.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=541bp
MLRLASSAGRIAGRAVRLLPRSAAPAAATASRRLAHAALAPTAPAAVKAS
PAAPAAAETDSSPAALPSGKISQVIGAVVDVHFESGTLPPILNALEVKDH
DIRLVLEVAQHLGENTVRAIAMDATEGLVRGQVVVDTGNPIMVPVGRETL
GRIINVIGEPIDERGPVKTDKFYPIHRDAPEFTDQDTTASILQTGIKVVD
LLAPYARGGKIGLFGGAGVGKTVFIMELINNIAKAHGGYSVFTGVGERTR
EGNDLYHEMIVSGVIKLDSDESKAALVYGQMNEPPGARARVGLTGLAIAE
YFRDEEGQDVLLFVDNIFRFTQANAEVSALLGRIPSAVGYQPTLATDLGG
LQERITTTRLGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAE
LGIYPAVDPLDSTSRMLSPLILGEEHYSVARSVQEILQSYKQLTDIIAIL
GMDELSEDDKLTVARARKVQRFLSQPFHVAEVFTGIDGRFVETEKTLAGF
KDLVAGSYDDLPENAFYMVGDIDEVISNARKMAADMEEAA*
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mRNA from alignment at tig00000081_pilon:545179..546909+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6606.t1 ID=Ggra6606.t1|Name=Ggra6606.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000081_pilon:545179..546909+ (Gracilaria gracilis GNS1m male)
ATGTTGAGACTcgcctcctccgccggtcgcatcgccggtcgcgccgtgcg
tcttctcccgcgctccgccgccccggccgccgccaccgcGTCCCGTCGTC
TTGCGCATGCTGCTTTGGCTCCCACCGCTCCGGCTGCCGTCAAGGCTTCG
CCGGCCGCCCCGGCCGCCGCGGAGACCGATTCTTCTCCGGCCGCGCTGCC
TTCTGGCAAGATCTCCCAGGTCATTGGTGCCGTTGTCGATGTTCATTTCG
GTTCGTTTTCGTCCTTCTACTTTTTCGCGTCGTTGGGAATGCGTTGACTG
ACCGTCTTTGTGCGCCATCTCGCCTTGCTATACATCGCGATCCGTTTTGA
CTGCGAAGAGTCGGGTACTTTGCCGCCAATTTTGAATGCTTTGGAGGTTA
AGGATCATGACATCCGTCTCGTTTTGGAGGTTGCGCAGCATTTGGGAGAG
AATACCGTGCGTGCCATTGCCATGGATGCCACCGAAGGTCTCGTCCGTGG
CCAGGTCGTCGTCGATACCGGCAACCCCATTATGGTTCCCGTCGGCCGTG
AGACCCTCGGCCGTATCATCAACGTTATCGGCGAACCCATTGACGAGCGC
GGCCCCGTCAAGACCGACAAATTCTATCCGATCCATCGTGATGCCCCAGA
GTTTACCGATCAGGATACCACCGCCTCCATTCTTCAGACCGGTATCAAGG
TCGTCGATCTGCTTGCACCGTACGCTCGTGGTGGTAAGATCGGTCTCTTC
GGTGGTGCCGGTGTAGGAAAGACTGTATTTATCATGGAACTCATCAACAA
TATTGCCAAGGCACATGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGC
GTACCCGCGAGGGTAATGATCTCTACCACGAAATGATTGTATCTGGTGTC
ATCAAGCTCGATAGCGATGAGTCTAAGGCCGCGCTTGTGTATGGTCAGAT
GAACGAACCACCAGGTGCTCGTGCCCGTGTCGGTCTCACTGGTCTCGCTA
TTGCCGAATATTTCCGTGACGAAGAGGGACAGGATGTGCTTCTGTTCGTC
GACAATATCTTCCGCTTCACACAAGCTAACGCTGAGGTGTCTGCCCTTCT
TGGTCGTATCCCATCTGCTGTGGGTTACCAACCGACTCTTGCTACGGATC
TTGGTGGTCTGCAAGAACGTATTACTACTACTCGTCTTGGATCTATCACA
TCTGTGCAAGCAATCTATGTGCCAGCTGATGATCTGACAGATCCAGCCCC
GGCTACCACTTTTGCGCATCTGGACGCCACTACTGTGCTTTCTCGCCAGA
TTGCCGAGCTTGGAATTTACCCAGCAGTCGATCCGCTTGACTCCACATCT
CGAATGCTTTCGCCGCTCATTCTTGGAGAAGAGCACTACAGCGTCGCGCG
TTCCGTTCAGGAGATTCTTCAGTCATACAAGCAGCTCACTGATATTATTG
CTATCCTTGGTATGGATGAACTCAGTGAAGACGACAAGCTCACTGTCGCT
CGTGCCCGTAAGGTGCAACGTTTCCTCTCCCAACCATTCCATGTTGCTGA
AGTGTTTACTGGTATTGATGGCCGCTTTGTCGAAACTGAAAAGACATTGG
CTGGGTTCAAGGATCTTGTTGCAGGTAGCTATGACGATCTGCCTGAGAAT
GCTTTCTATATGGTTGGCGACATCGATGAAGTTATTTCAAATGCTCGTAA
GATGGCAGCAGACATGGAAGAAGCCGCGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:545179..546909+

>Ggra6606.t1 ID=Ggra6606.t1|Name=Ggra6606.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00000081_pilon:545179..546909+ (Gracilaria gracilis GNS1m male)
ATGTTGAGACTcgcctcctccgccggtcgcatcgccggtcgcgccgtgcg
tcttctcccgcgctccgccgccccggccgccgccaccgcGTCCCGTCGTC
TTGCGCATGCTGCTTTGGCTCCCACCGCTCCGGCTGCCGTCAAGGCTTCG
CCGGCCGCCCCGGCCGCCGCGGAGACCGATTCTTCTCCGGCCGCGCTGCC
TTCTGGCAAGATCTCCCAGGTCATTGGTGCCGTTGTCGATGTTCATTTCG
AGTCGGGTACTTTGCCGCCAATTTTGAATGCTTTGGAGGTTAAGGATCAT
GACATCCGTCTCGTTTTGGAGGTTGCGCAGCATTTGGGAGAGAATACCGT
GCGTGCCATTGCCATGGATGCCACCGAAGGTCTCGTCCGTGGCCAGGTCG
TCGTCGATACCGGCAACCCCATTATGGTTCCCGTCGGCCGTGAGACCCTC
GGCCGTATCATCAACGTTATCGGCGAACCCATTGACGAGCGCGGCCCCGT
CAAGACCGACAAATTCTATCCGATCCATCGTGATGCCCCAGAGTTTACCG
ATCAGGATACCACCGCCTCCATTCTTCAGACCGGTATCAAGGTCGTCGAT
CTGCTTGCACCGTACGCTCGTGGTGGTAAGATCGGTCTCTTCGGTGGTGC
CGGTGTAGGAAAGACTGTATTTATCATGGAACTCATCAACAATATTGCCA
AGGCACATGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGCGTACCCGC
GAGGGTAATGATCTCTACCACGAAATGATTGTATCTGGTGTCATCAAGCT
CGATAGCGATGAGTCTAAGGCCGCGCTTGTGTATGGTCAGATGAACGAAC
CACCAGGTGCTCGTGCCCGTGTCGGTCTCACTGGTCTCGCTATTGCCGAA
TATTTCCGTGACGAAGAGGGACAGGATGTGCTTCTGTTCGTCGACAATAT
CTTCCGCTTCACACAAGCTAACGCTGAGGTGTCTGCCCTTCTTGGTCGTA
TCCCATCTGCTGTGGGTTACCAACCGACTCTTGCTACGGATCTTGGTGGT
CTGCAAGAACGTATTACTACTACTCGTCTTGGATCTATCACATCTGTGCA
AGCAATCTATGTGCCAGCTGATGATCTGACAGATCCAGCCCCGGCTACCA
CTTTTGCGCATCTGGACGCCACTACTGTGCTTTCTCGCCAGATTGCCGAG
CTTGGAATTTACCCAGCAGTCGATCCGCTTGACTCCACATCTCGAATGCT
TTCGCCGCTCATTCTTGGAGAAGAGCACTACAGCGTCGCGCGTTCCGTTC
AGGAGATTCTTCAGTCATACAAGCAGCTCACTGATATTATTGCTATCCTT
GGTATGGATGAACTCAGTGAAGACGACAAGCTCACTGTCGCTCGTGCCCG
TAAGGTGCAACGTTTCCTCTCCCAACCATTCCATGTTGCTGAAGTGTTTA
CTGGTATTGATGGCCGCTTTGTCGAAACTGAAAAGACATTGGCTGGGTTC
AAGGATCTTGTTGCAGGTAGCTATGACGATCTGCCTGAGAATGCTTTCTA
TATGGTTGGCGACATCGATGAAGTTATTTCAAATGCTCGTAAGATGGCAG
CAGACATGGAAGAAGCCGCGTAG
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