Ggra6601.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6601.t1
Unique NameGgra6601.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:534757..536040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5059.CADAFLAP00002960
Preferred nameREI1
PFAMszf-C2H2_2,zf-C2H2_jaz,zf-met
Max annot lvl4751|Fungi
KEGG koko:K14816
GOsGO:0000003,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006810,GO:0006913,GO:0007049,GO:0007114,GO:0007117,GO:0008150,GO:0009987,GO:0015934,GO:0019954,GO:0022414,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032505,GO:0032991,GO:0040007,GO:0042254,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043565,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046907,GO:0051169,GO:0051179,GO:0051234,GO:0051301,GO:0051641,GO:0051649,GO:0071840,GO:0097159,GO:1901363,GO:1990904
Evalue6.92e-30
EggNOG OGsKOG2785@1|root,KOG2785@2759|Eukaryota,38CWN@33154|Opisthokonta,3NX8I@4751|Fungi,3QR60@4890|Ascomycota,20E2M@147545|Eurotiomycetes,3S3PA@5042|Eurotiales
DescriptionC2H2 finger domain protein
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6601Ggra6601Gracilaria gracilis GNS1m malegenetig00000081_pilon 534757..536040 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6601.t1.stop1Ggra6601.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 534757..534759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6601.t1.CDS1Ggra6601.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 534757..536040 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6601.t1.exon1Ggra6601.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 534757..536040 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6601.t1.start1Ggra6601.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 536038..536040 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6601.t1Ggra6601.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 534757..536040 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6601.t1 ID=Ggra6601.t1|Name=Ggra6601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MASEQSISCTSCNTAVSGAPAVRTHYRSELHLVNVKRRVAGLAPLSAADF
ARRAQLLDASRNAALDAKRGAHCDVCQKRFASEKAYRNHELSRRHRDKLA
AALRRGDDWMSSVHSGDADGEALAPPHEHEREQGRGDDEQQQQQYDEVEA
VLRARLREWRRRQGYGGVFDDAWFDDAAQALAHLWRGGMFVPFRERLSDA
AGLVQYLSQKVCVGHACVQCERTFDDEHAVRKHMRDVGHCAMSGDLDEWM
LEYGEFYDWRVDGADDWEEVQPDGDLQHDGDDDDDDDDDDVVVVVADDAR
SEGVAQQLPVGRLGGEADERGMQDDGAEEVALVVGNRVVGHRSLKRFYKQ
HVRGDERSEAMEAARAERQLLQLSRRAEQRGALPARVRRLAAAREKRLAL
LVGTKNYYCRKARFKQHMAVLNSGYRA*
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spliced messenger RNA

>Ggra6601.t1 ID=Ggra6601.t1|Name=Ggra6601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:534757..536040- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGGAGCAAAGCATCAGCTGCACGTCGTGCAACACGGCCGTAAG
CGGCGCGCCCGCGGTGCGTACGCACTACCGCAGCGAGCTGCACCTGGTGA
ACGTGAAGCGGCGCGTAGCCGGGCTGGCGCCGCTGTCGGCGGCCGACTTT
GCGCGCCGCGCGCAGCTGCTGGACGCGTCCAGAAACGCGGCGCTCGACGC
CAAGCGCGGCGCGCACTGCGACGTGTGCCAGAAGCGCTTCGCGTCCGAAA
AGGCGTACCGCAACCACGAGCTTTCGCGCCGCCACCGCGACAAGCTCGCC
GCCGCGCTGCGACGCGGCGACGACTGGATGTCGTCCGTGCACAGCGGAGA
CGCTGACGGCGAAGCGCTCGCGCCGCCGCACGAGCACGAGCGGGAGCAAG
GGCGCGGCGACGACGAGCAGCAGCAGCAGCAGTACGACGAGGTGGAGGCG
GTGCTGCGCGCAAGGCTGCGCGAGTGGCGGCGGCGGCAAGGGTACGGCGG
CGTGTTCGACGACGCGTGGTTCGACGACGCGGCGCAAGCGCTGGCGCATC
TGTGGCGCGGCGGCATGTTCGTGCCGTTCCGCGAGCGGCTCAGCGACGCG
GCGGGGCTGGTGCAGTACTTGTCGCAAAAGGTGTGCGTCGGGCACGCGTG
CGTGCAATGCGAACGCACGTTCGATGACGAGCACGCTGTGCGTAAACATA
TGCGCGACGTGGGTCACTGCGCCATGAGCGGCGACCTGGACGAGTGGATG
CTGGAGTACGGCGAGTTTTACGACTGGCGCGTGGACGGCGCGGACGACTG
GGAGGAGGTGCAGCCCGACGGCGACTTGCAGCACGACGGGGACGACGACG
ACGACGACGACGACGACGACGTGGTGGTGGTGGTGGCGGACGACGCGCGC
TCAGAAGGCGTCGCGCAGCAGCTGCCGGTGGGCCGACTGGGCGGGGAGGC
AGACGAGCGCGGCATGCAGGACGACGGCGCGGAAGAAGTGGCGCTGGTGG
TGGGCAATCGCGTGGTGGGGCATCGCTCGCTCAAGCGCTTCTACAAGCAG
CACGTACGCGGCGACGAGCGGTCGGAGGCAATGGAAGCGGCGCGCGCAGA
GCGACAGCTGCTGCAGCTGTCGCGACGAGCCGAGCAGCGCGGCGCGCTGC
CCGCGCGCGTGCGACGGCTGGCGGCGGCGCGCGAGAAGCGACTGGCGCTG
CTGGTGGGCACCAAGAACTACTACTGCCGAAAGGCGCGCTTCAAGCAGCA
CATGGCCGTGCTCAACTCCGGCTACCGCGCGTGA
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protein sequence of Ggra6601.t1

>Ggra6601.t1 ID=Ggra6601.t1|Name=Ggra6601.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MASEQSISCTSCNTAVSGAPAVRTHYRSELHLVNVKRRVAGLAPLSAADF
ARRAQLLDASRNAALDAKRGAHCDVCQKRFASEKAYRNHELSRRHRDKLA
AALRRGDDWMSSVHSGDADGEALAPPHEHEREQGRGDDEQQQQQYDEVEA
VLRARLREWRRRQGYGGVFDDAWFDDAAQALAHLWRGGMFVPFRERLSDA
AGLVQYLSQKVCVGHACVQCERTFDDEHAVRKHMRDVGHCAMSGDLDEWM
LEYGEFYDWRVDGADDWEEVQPDGDLQHDGDDDDDDDDDDVVVVVADDAR
SEGVAQQLPVGRLGGEADERGMQDDGAEEVALVVGNRVVGHRSLKRFYKQ
HVRGDERSEAMEAARAERQLLQLSRRAEQRGALPARVRRLAAAREKRLAL
LVGTKNYYCRKARFKQHMAVLNSGYRA*
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mRNA from alignment at tig00000081_pilon:534757..536040-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6601.t1 ID=Ggra6601.t1|Name=Ggra6601.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:534757..536040- (Gracilaria gracilis GNS1m male)
ATGGCGTCGGAGCAAAGCATCAGCTGCACGTCGTGCAACACGGCCGTAAG
CGGCGCGCCCGCGGTGCGTACGCACTACCGCAGCGAGCTGCACCTGGTGA
ACGTGAAGCGGCGCGTAGCCGGGCTGGCGCCGCTGTCGGCGGCCGACTTT
GCGCGCCGCGCGCAGCTGCTGGACGCGTCCAGAAACGCGGCGCTCGACGC
CAAGCGCGGCGCGCACTGCGACGTGTGCCAGAAGCGCTTCGCGTCCGAAA
AGGCGTACCGCAACCACGAGCTTTCGCGCCGCCACCGCGACAAGCTCGCC
GCCGCGCTGCGACGCGGCGACGACTGGATGTCGTCCGTGCACAGCGGAGA
CGCTGACGGCGAAGCGCTCGCGCCGCCGCACGAGCACGAGCGGGAGCAAG
GGCGCGGCGACGACGAGCAGCAGCAGCAGCAGTACGACGAGGTGGAGGCG
GTGCTGCGCGCAAGGCTGCGCGAGTGGCGGCGGCGGCAAGGGTACGGCGG
CGTGTTCGACGACGCGTGGTTCGACGACGCGGCGCAAGCGCTGGCGCATC
TGTGGCGCGGCGGCATGTTCGTGCCGTTCCGCGAGCGGCTCAGCGACGCG
GCGGGGCTGGTGCAGTACTTGTCGCAAAAGGTGTGCGTCGGGCACGCGTG
CGTGCAATGCGAACGCACGTTCGATGACGAGCACGCTGTGCGTAAACATA
TGCGCGACGTGGGTCACTGCGCCATGAGCGGCGACCTGGACGAGTGGATG
CTGGAGTACGGCGAGTTTTACGACTGGCGCGTGGACGGCGCGGACGACTG
GGAGGAGGTGCAGCCCGACGGCGACTTGCAGCACGACGGGGACGACGACG
ACGACGACGACGACGACGACGTGGTGGTGGTGGTGGCGGACGACGCGCGC
TCAGAAGGCGTCGCGCAGCAGCTGCCGGTGGGCCGACTGGGCGGGGAGGC
AGACGAGCGCGGCATGCAGGACGACGGCGCGGAAGAAGTGGCGCTGGTGG
TGGGCAATCGCGTGGTGGGGCATCGCTCGCTCAAGCGCTTCTACAAGCAG
CACGTACGCGGCGACGAGCGGTCGGAGGCAATGGAAGCGGCGCGCGCAGA
GCGACAGCTGCTGCAGCTGTCGCGACGAGCCGAGCAGCGCGGCGCGCTGC
CCGCGCGCGTGCGACGGCTGGCGGCGGCGCGCGAGAAGCGACTGGCGCTG
CTGGTGGGCACCAAGAACTACTACTGCCGAAAGGCGCGCTTCAAGCAGCA
CATGGCCGTGCTCAACTCCGGCTACCGCGCGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:534757..536040-

>Ggra6601.t1 ID=Ggra6601.t1|Name=Ggra6601.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:534757..536040- (Gracilaria gracilis GNS1m male)
ATGGCGTCGGAGCAAAGCATCAGCTGCACGTCGTGCAACACGGCCGTAAG
CGGCGCGCCCGCGGTGCGTACGCACTACCGCAGCGAGCTGCACCTGGTGA
ACGTGAAGCGGCGCGTAGCCGGGCTGGCGCCGCTGTCGGCGGCCGACTTT
GCGCGCCGCGCGCAGCTGCTGGACGCGTCCAGAAACGCGGCGCTCGACGC
CAAGCGCGGCGCGCACTGCGACGTGTGCCAGAAGCGCTTCGCGTCCGAAA
AGGCGTACCGCAACCACGAGCTTTCGCGCCGCCACCGCGACAAGCTCGCC
GCCGCGCTGCGACGCGGCGACGACTGGATGTCGTCCGTGCACAGCGGAGA
CGCTGACGGCGAAGCGCTCGCGCCGCCGCACGAGCACGAGCGGGAGCAAG
GGCGCGGCGACGACGAGCAGCAGCAGCAGCAGTACGACGAGGTGGAGGCG
GTGCTGCGCGCAAGGCTGCGCGAGTGGCGGCGGCGGCAAGGGTACGGCGG
CGTGTTCGACGACGCGTGGTTCGACGACGCGGCGCAAGCGCTGGCGCATC
TGTGGCGCGGCGGCATGTTCGTGCCGTTCCGCGAGCGGCTCAGCGACGCG
GCGGGGCTGGTGCAGTACTTGTCGCAAAAGGTGTGCGTCGGGCACGCGTG
CGTGCAATGCGAACGCACGTTCGATGACGAGCACGCTGTGCGTAAACATA
TGCGCGACGTGGGTCACTGCGCCATGAGCGGCGACCTGGACGAGTGGATG
CTGGAGTACGGCGAGTTTTACGACTGGCGCGTGGACGGCGCGGACGACTG
GGAGGAGGTGCAGCCCGACGGCGACTTGCAGCACGACGGGGACGACGACG
ACGACGACGACGACGACGACGTGGTGGTGGTGGTGGCGGACGACGCGCGC
TCAGAAGGCGTCGCGCAGCAGCTGCCGGTGGGCCGACTGGGCGGGGAGGC
AGACGAGCGCGGCATGCAGGACGACGGCGCGGAAGAAGTGGCGCTGGTGG
TGGGCAATCGCGTGGTGGGGCATCGCTCGCTCAAGCGCTTCTACAAGCAG
CACGTACGCGGCGACGAGCGGTCGGAGGCAATGGAAGCGGCGCGCGCAGA
GCGACAGCTGCTGCAGCTGTCGCGACGAGCCGAGCAGCGCGGCGCGCTGC
CCGCGCGCGTGCGACGGCTGGCGGCGGCGCGCGAGAAGCGACTGGCGCTG
CTGGTGGGCACCAAGAACTACTACTGCCGAAAGGCGCGCTTCAAGCAGCA
CATGGCCGTGCTCAACTCCGGCTACCGCGCGTGA
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