Ggra6600.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6600.t1
Unique NameGgra6600.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:533028..533861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_05043T0
PFAMsPeptidase_C14
Max annot lvl33154|Opisthokonta
Evalue5.84e-57
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,3A34R@33154|Opisthokonta
DescriptionCaspase domain
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6600Ggra6600Gracilaria gracilis GNS1m malegenetig00000081_pilon 533028..533861 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6600.t1.stop1Ggra6600.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 533028..533030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6600.t1.CDS1Ggra6600.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 533028..533861 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6600.t1.exon1Ggra6600.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 533028..533861 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6600.t1.start1Ggra6600.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 533859..533861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6600.t1Ggra6600.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 533028..533861 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6600.t1 ID=Ggra6600.t1|Name=Ggra6600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
LLKTKFRFRDKDFVVLTDVKTGIPNVRTGRPDRKTILDALKWLVDGSRKG
DSLWFSFSGHGSQVIDTSGDESDGYDETLLPVDYKIAGPIIDDELYRIVR
RVGGGARLTVLLDACHSGTGLDLPYQHDVFGTGTGQKLSSGGRPMSLTSG
LVNLTGQIFNGNASGALQAGLNLVKGRKKTKPHQGPDPNAGEVLLFAGCK
DNQTAADTSKFAKGLTTGAMTYALIEAIEHSTVGDWRNYNYRQLLQTMRQ
KIRENHMLQTPQFSTSHPFDISSPFVL*
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spliced messenger RNA

>Ggra6600.t1 ID=Ggra6600.t1|Name=Ggra6600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000081_pilon:533028..533861- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCAAGACCAAGTTTAGGTTCCGCGACAAGGACTTTGTCGTCTTGAC
CGATGTGAAGACCGGCATTCCTAACGTCCGCACCGGTCGTCCGGATCGAA
AGACCATTCTCGACGCCCTCAAGTGGCTCGTGGACGGCTCCCGCAAGGGC
GATTCCTTGTGGTTCTCCTTCTCGGGCCATGGCAGCCAGGTCATTGATAC
CAGCGGCGATGAGAGTGATGGCTATGATGAGACTCTGTTGCCCGTCGATT
ACAAGATCGCGGGACCTATCATCGACGACGAGCTCTACAGGATTGTGCGA
CGCGTCGGCGGCGGTGCGCGACTCACCGTCTTGTTGGATGCCTGTCACTC
TGGTACCGGCCTTGATTTGCCCTATCAGCACGATGTGTTTGGTACTGGCA
CCGGACAAAAGCTCAGCTCGGGTGGCAGACCCATGAGTCTCACCTCCGGC
CTCGTCAACCTCACCGGCCAGATTTTTAACGGCAACGCTTCTGGCGCGCT
GCAGGCGGGGCTCAATCTTGTCAAGGGTAGGAAGAAGACCAAACCGCATC
AGGGACCGGACCCCAATGCTGGTGAGGTCCTATTGTTTGCTGGATGCAAG
GATAATCAGACTGCGGCTGATACGTCCAAGTTTGCCAAGGGGCTTACTAC
CGGTGCTATGACTTATGCTCTTATTGAGGCTATTGAGCATTCTACCGTTG
GAGATTGGCGCAACTACAACTATCGACAATTGTTGCAGACTATGAGGCAG
AAAATTCGCGAGAACCACATGCTGCAGACACCGCAGTTTTCTACTTCTCA
CCCATTCGATATCTCGTCTCCGTTCGTTTTGTAG
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protein sequence of Ggra6600.t1

>Ggra6600.t1 ID=Ggra6600.t1|Name=Ggra6600.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
LLKTKFRFRDKDFVVLTDVKTGIPNVRTGRPDRKTILDALKWLVDGSRKG
DSLWFSFSGHGSQVIDTSGDESDGYDETLLPVDYKIAGPIIDDELYRIVR
RVGGGARLTVLLDACHSGTGLDLPYQHDVFGTGTGQKLSSGGRPMSLTSG
LVNLTGQIFNGNASGALQAGLNLVKGRKKTKPHQGPDPNAGEVLLFAGCK
DNQTAADTSKFAKGLTTGAMTYALIEAIEHSTVGDWRNYNYRQLLQTMRQ
KIRENHMLQTPQFSTSHPFDISSPFVL*
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mRNA from alignment at tig00000081_pilon:533028..533861-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6600.t1 ID=Ggra6600.t1|Name=Ggra6600.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000081_pilon:533028..533861- (Gracilaria gracilis GNS1m male)
TTGCTCAAGACCAAGTTTAGGTTCCGCGACAAGGACTTTGTCGTCTTGAC
CGATGTGAAGACCGGCATTCCTAACGTCCGCACCGGTCGTCCGGATCGAA
AGACCATTCTCGACGCCCTCAAGTGGCTCGTGGACGGCTCCCGCAAGGGC
GATTCCTTGTGGTTCTCCTTCTCGGGCCATGGCAGCCAGGTCATTGATAC
CAGCGGCGATGAGAGTGATGGCTATGATGAGACTCTGTTGCCCGTCGATT
ACAAGATCGCGGGACCTATCATCGACGACGAGCTCTACAGGATTGTGCGA
CGCGTCGGCGGCGGTGCGCGACTCACCGTCTTGTTGGATGCCTGTCACTC
TGGTACCGGCCTTGATTTGCCCTATCAGCACGATGTGTTTGGTACTGGCA
CCGGACAAAAGCTCAGCTCGGGTGGCAGACCCATGAGTCTCACCTCCGGC
CTCGTCAACCTCACCGGCCAGATTTTTAACGGCAACGCTTCTGGCGCGCT
GCAGGCGGGGCTCAATCTTGTCAAGGGTAGGAAGAAGACCAAACCGCATC
AGGGACCGGACCCCAATGCTGGTGAGGTCCTATTGTTTGCTGGATGCAAG
GATAATCAGACTGCGGCTGATACGTCCAAGTTTGCCAAGGGGCTTACTAC
CGGTGCTATGACTTATGCTCTTATTGAGGCTATTGAGCATTCTACCGTTG
GAGATTGGCGCAACTACAACTATCGACAATTGTTGCAGACTATGAGGCAG
AAAATTCGCGAGAACCACATGCTGCAGACACCGCAGTTTTCTACTTCTCA
CCCATTCGATATCTCGTCTCCGTTCGTTTTGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:533028..533861-

>Ggra6600.t1 ID=Ggra6600.t1|Name=Ggra6600.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000081_pilon:533028..533861- (Gracilaria gracilis GNS1m male)
TTGCTCAAGACCAAGTTTAGGTTCCGCGACAAGGACTTTGTCGTCTTGAC
CGATGTGAAGACCGGCATTCCTAACGTCCGCACCGGTCGTCCGGATCGAA
AGACCATTCTCGACGCCCTCAAGTGGCTCGTGGACGGCTCCCGCAAGGGC
GATTCCTTGTGGTTCTCCTTCTCGGGCCATGGCAGCCAGGTCATTGATAC
CAGCGGCGATGAGAGTGATGGCTATGATGAGACTCTGTTGCCCGTCGATT
ACAAGATCGCGGGACCTATCATCGACGACGAGCTCTACAGGATTGTGCGA
CGCGTCGGCGGCGGTGCGCGACTCACCGTCTTGTTGGATGCCTGTCACTC
TGGTACCGGCCTTGATTTGCCCTATCAGCACGATGTGTTTGGTACTGGCA
CCGGACAAAAGCTCAGCTCGGGTGGCAGACCCATGAGTCTCACCTCCGGC
CTCGTCAACCTCACCGGCCAGATTTTTAACGGCAACGCTTCTGGCGCGCT
GCAGGCGGGGCTCAATCTTGTCAAGGGTAGGAAGAAGACCAAACCGCATC
AGGGACCGGACCCCAATGCTGGTGAGGTCCTATTGTTTGCTGGATGCAAG
GATAATCAGACTGCGGCTGATACGTCCAAGTTTGCCAAGGGGCTTACTAC
CGGTGCTATGACTTATGCTCTTATTGAGGCTATTGAGCATTCTACCGTTG
GAGATTGGCGCAACTACAACTATCGACAATTGTTGCAGACTATGAGGCAG
AAAATTCGCGAGAACCACATGCTGCAGACACCGCAGTTTTCTACTTCTCA
CCCATTCGATATCTCGTCTCCGTTCGTTTTGTAG
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