Ggra6598.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6598.t1
Unique NameGgra6598.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:521610..522485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6598Ggra6598Gracilaria gracilis GNS1m malegenetig00000081_pilon 521610..522485 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6598.t1.start1Ggra6598.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 521610..521612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6598.t1.CDS1Ggra6598.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 521610..522485 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6598.t1.exon1Ggra6598.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 521610..522485 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6598.t1.stop1Ggra6598.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 522483..522485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6598.t1Ggra6598.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 521610..522485 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6598.t1 ID=Ggra6598.t1|Name=Ggra6598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MRRSLRRTIGLRPSPAASTPHSFNLRHRLLAAPISTPPSAPPSPSLLPLP
RLNTHSSPPARFSLQPPPQSTPPHLHSAPHSSVLLTPQCCFPKCRPPSPS
LPGTKLSSNARAAAPPGTAPATVPEVAIASVMYATTTSAVTATILKNVKC
AAKCIATHAPPWSVIRDGASVSAVSPPTFTLVPLLRFVNDVELQTWEFVS
DAYIVAEPSGAAAFMPVASSAAMLCVAPARVKTTFVDVAEVLVDLLAARV
AFVTLARNPGIGDELLSARLCPMTGVQEVVGREEKIYNSCM*
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spliced messenger RNA

>Ggra6598.t1 ID=Ggra6598.t1|Name=Ggra6598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000081_pilon:521610..522485+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCTCGCTGCGCCGCACAATTGGCTTGCGCCCATCGCCTGCTGC
ATCCACGCCTCATTCGTTTAACCTTCGTCATCGCCTCCTCGCCGCCCCTA
TTTCAACCCCCCCTAGCGCTCCACCTTCACCATCTCTTCTCCCTCTCCCC
CGCCTCAACACCCATTCCTCACCACCAGCTCGTTTCTCCCTGCAGCCTCC
TCCCCAATCCACACCACCTCACCTTCACAGTGCTCCTCACTCCTCAGTGC
TCCTCACTCCTCAGTGCTGCTTCCCGAAATGTCGTCCACCATCTCCGTCA
CTTCCAGGCACGAAATTATCGTCGAATGCGAGGGCTGCGGCTCCACCTGG
AACCGCACCCGCCACAGTTCCCGAGGTCGCAATCGCATCTGTGATGTATG
CAACAACTACTTCTGCCGTAACTGCGACAATCTTGAAAAATGTGAAGTGT
GCCGCAAAGTGTATTGCGACGCATGCTCCGCCATGGTCCGTCATCAGGGA
CGGCGCAAGTGTTTCCGCTGTCAGCCCGCCAACCTTCACTTTGGTCCCAC
TTCTACGCTTTGTCAACGATGTGGAGCTCCAGACCTGGGAGTTCGTGTCC
GATGCCTACATTGTCGCAGAACCCTCAGGTGCAGCTGCCTTTATGCCAGT
TGCGAGTTCTGCGGCGATGCTGTGTGTCGCTCCTGCCCGGGTGAAGACTA
CTTTTGTCGACGTTGCAGAGGTTCTGGTAGATTTGCTTGCAGCGCGTGTT
GCATTCGTCACACTCGCTCGCAATCCCGGCATCGGAGATGAGCTTTTGAG
TGCCCGCTTGTGTCCAATGACGGGAGTCCAAGAGGTAGTAGGGAGAGAGG
AAAAAATATATAATTCTTGTATGTAG
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protein sequence of Ggra6598.t1

>Ggra6598.t1 ID=Ggra6598.t1|Name=Ggra6598.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MRRSLRRTIGLRPSPAASTPHSFNLRHRLLAAPISTPPSAPPSPSLLPLP
RLNTHSSPPARFSLQPPPQSTPPHLHSAPHSSVLLTPQCCFPKCRPPSPS
LPGTKLSSNARAAAPPGTAPATVPEVAIASVMYATTTSAVTATILKNVKC
AAKCIATHAPPWSVIRDGASVSAVSPPTFTLVPLLRFVNDVELQTWEFVS
DAYIVAEPSGAAAFMPVASSAAMLCVAPARVKTTFVDVAEVLVDLLAARV
AFVTLARNPGIGDELLSARLCPMTGVQEVVGREEKIYNSCM*
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mRNA from alignment at tig00000081_pilon:521610..522485+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6598.t1 ID=Ggra6598.t1|Name=Ggra6598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000081_pilon:521610..522485+ (Gracilaria gracilis GNS1m male)
ATGCGCCGCTCGCTGCGCCGCACAATTGGCTTGCGCCCATCGCCTGCTGC
ATCCACGCCTCATTCGTTTAACCTTCGTCATCGCCTCCTCGCCGCCCCTA
TTTCAACCCCCCCTAGCGCTCCACCTTCACCATCTCTTCTCCCTCTCCCC
CGCCTCAACACCCATTCCTCACCACCAGCTCGTTTCTCCCTGCAGCCTCC
TCCCCAATCCACACCACCTCACCTTCACAGTGCTCCTCACTCCTCAGTGC
TCCTCACTCCTCAGTGCTGCTTCCCGAAATGTCGTCCACCATCTCCGTCA
CTTCCAGGCACGAAATTATCGTCGAATGCGAGGGCTGCGGCTCCACCTGG
AACCGCACCCGCCACAGTTCCCGAGGTCGCAATCGCATCTGTGATGTATG
CAACAACTACTTCTGCCGTAACTGCGACAATCTTGAAAAATGTGAAGTGT
GCCGCAAAGTGTATTGCGACGCATGCTCCGCCATGGTCCGTCATCAGGGA
CGGCGCAAGTGTTTCCGCTGTCAGCCCGCCAACCTTCACTTTGGTCCCAC
TTCTACGCTTTGTCAACGATGTGGAGCTCCAGACCTGGGAGTTCGTGTCC
GATGCCTACATTGTCGCAGAACCCTCAGGTGCAGCTGCCTTTATGCCAGT
TGCGAGTTCTGCGGCGATGCTGTGTGTCGCTCCTGCCCGGGTGAAGACTA
CTTTTGTCGACGTTGCAGAGGTTCTGGTAGATTTGCTTGCAGCGCGTGTT
GCATTCGTCACACTCGCTCGCAATCCCGGCATCGGAGATGAGCTTTTGAG
TGCCCGCTTGTGTCCAATGACGGGAGTCCAAGAGGTAGTAGGGAGAGAGG
AAAAAATATATAATTCTTGTATGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:521610..522485+

>Ggra6598.t1 ID=Ggra6598.t1|Name=Ggra6598.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000081_pilon:521610..522485+ (Gracilaria gracilis GNS1m male)
ATGCGCCGCTCGCTGCGCCGCACAATTGGCTTGCGCCCATCGCCTGCTGC
ATCCACGCCTCATTCGTTTAACCTTCGTCATCGCCTCCTCGCCGCCCCTA
TTTCAACCCCCCCTAGCGCTCCACCTTCACCATCTCTTCTCCCTCTCCCC
CGCCTCAACACCCATTCCTCACCACCAGCTCGTTTCTCCCTGCAGCCTCC
TCCCCAATCCACACCACCTCACCTTCACAGTGCTCCTCACTCCTCAGTGC
TCCTCACTCCTCAGTGCTGCTTCCCGAAATGTCGTCCACCATCTCCGTCA
CTTCCAGGCACGAAATTATCGTCGAATGCGAGGGCTGCGGCTCCACCTGG
AACCGCACCCGCCACAGTTCCCGAGGTCGCAATCGCATCTGTGATGTATG
CAACAACTACTTCTGCCGTAACTGCGACAATCTTGAAAAATGTGAAGTGT
GCCGCAAAGTGTATTGCGACGCATGCTCCGCCATGGTCCGTCATCAGGGA
CGGCGCAAGTGTTTCCGCTGTCAGCCCGCCAACCTTCACTTTGGTCCCAC
TTCTACGCTTTGTCAACGATGTGGAGCTCCAGACCTGGGAGTTCGTGTCC
GATGCCTACATTGTCGCAGAACCCTCAGGTGCAGCTGCCTTTATGCCAGT
TGCGAGTTCTGCGGCGATGCTGTGTGTCGCTCCTGCCCGGGTGAAGACTA
CTTTTGTCGACGTTGCAGAGGTTCTGGTAGATTTGCTTGCAGCGCGTGTT
GCATTCGTCACACTCGCTCGCAATCCCGGCATCGGAGATGAGCTTTTGAG
TGCCCGCTTGTGTCCAATGACGGGAGTCCAAGAGGTAGTAGGGAGAGAGG
AAAAAATATATAATTCTTGTATGTAG
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