Ggra6592.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6592.t1
Unique NameGgra6592.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:478868..480220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS220CT
PFAMsPHO4
Max annot lvl2759|Eukaryota
KEGG koko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
Evalue1.12e-123
EggNOG OGsCOG0306@1|root,KOG2493@2759|Eukaryota
Descriptioninorganic phosphate transmembrane transporter activity
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6592Ggra6592Gracilaria gracilis GNS1m malegenetig00000081_pilon 478868..480220 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6592.t1.stop1Ggra6592.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 478868..478870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6592.t1.CDS1Ggra6592.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 478868..480220 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6592.t1.exon1Ggra6592.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 478868..480220 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6592.t1.start1Ggra6592.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 480218..480220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6592.t1Ggra6592.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 478868..480220 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6592.t1 ID=Ggra6592.t1|Name=Ggra6592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=451bp
MHTRCVPRAAILTPGLLVVAGGVVAFALSAALGANDVANSLGTSVGTGAI
KVPVALAIGAVMEFAGAVLFGSTVTKTISSGVVTIGAATFAAPVSYMLGM
LAVLFGCTVWMGVATKFGLPVSSTHSVVGALIGLGLVSGWGINYGAVQRI
VASWFLSPLIGAVISTMLYKIISVAIVDAKRPAQATRRFLPLLAGAASFV
LTMFVLGKGVRFAQALTPDRVFYIAMGVAFACSGVAGALATAIHSRQYIA
RKFGINGDGTLSGAPSLSVSEQQEDVERIFKVLQVVTACLLSFSHGSNDV
SNAIGPFAAIYSMWRNNGRIDGMVTIPPWVLVLGGLGISTGLGLFGKPVM
ETVGKKITKLKPTMGFAVELSTALTVLVASEMGLPVSTTHTLIGCIVAIG
LSNGDSKAVNKNTLASIAGSWGVTLPFSALVTVLFYVALRPFLPVVPAVP
*
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spliced messenger RNA

>Ggra6592.t1 ID=Ggra6592.t1|Name=Ggra6592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000081_pilon:478868..480220- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACCAGATGCGTGCCTCGCGCCGCCATTCTCACCCCCGGGCTCTT
GGTGGTTGCTGGTGGCGTCGTTGCCTTTGCCTTGAGCGCCGCCTTGGGCG
CCAATGACGTTGCCAATTCGCTCGGTACTTCTGTGGGCACGGGCGCTATC
AAGGTGCCGGTTGCGCTTGCTATTGGCGCTGTTATGGAGTTTGCGGGCGC
CGTCTTGTTTGGCAGCACCGTCACAAAGACCATTTCGTCGGGCGTCGTCA
CTATTGGCGCCGCTACCTTCGCTGCGCCTGTTAGCTATATGCTGGGCATG
CTCGCCGTGCTGTTTGGCTGTACCGTGTGGATGGGCGTTGCCACCAAGTT
CGGTCTGCCCGTTTCGTCCACTCACTCCGTCGTCGGTGCGCTCATCGGCC
TGGGTTTGGTGTCTGGCTGGGGCATTAACTACGGCGCTGTGCAACGAATT
GTGGCTAGCTGGTTCCTGTCGCCGCTTATTGGTGCCGTCATTTCAACCAT
GCTGTACAAGATCATCAGCGTGGCCATCGTGGACGCAAAGAGACCGGCGC
AGGCTACTCGTCGCTTCTTGCCGCTGTTGGCGGGCGCCGCGTCTTTCGTG
CTCACTATGTTTGTCTTGGGCAAGGGTGTGCGTTTTGCGCAGGCTCTCAC
ACCTGATCGCGTGTTCTACATCGCAATGGGCGTCGCCTTTGCGTGCTCTG
GTGTGGCGGGCGCGTTGGCCACTGCCATCCATTCTAGGCAATACATCGCA
CGCAAGTTTGGCATAAATGGTGATGGAACTCTGTCCGGTGCGCCCAGCCT
GTCAGTTTCAGAGCAGCAAGAAGACGTGGAACGCATTTTCAAGGTTTTGC
AGGTGGTCACGGCGTGTTTGCTGTCGTTCTCGCATGGATCGAATGATGTG
TCCAACGCCATTGGACCGTTTGCGGCCATTTACTCCATGTGGAGGAATAA
CGGGCGGATAGATGGAATGGTGACGATTCCACCGTGGGTGTTGGTGTTAG
GCGGTCTGGGTATCTCCACTGGGCTGGGCTTGTTTGGAAAGCCAGTGATG
GAAACGGTTGGCAAAAAGATCACCAAGCTCAAGCCGACGATGGGATTTGC
TGTAGAGCTGAGCACGGCACTGACGGTGCTCGTAGCTTCGGAAATGGGAC
TGCCGGTTTCTACTACTCATACGTTGATCGGGTGCATCGTGGCTATCGGC
TTATCAAATGGTGATTCAAAGGCGGTGAACAAGAACACTCTGGCGAGTAT
TGCGGGCTCTTGGGGGGTGACGTTGCCGTTTTCAGCGTTGGTTACTGTGC
TATTTTACGTAGCTCTTCGGCCATTCTTACCCGTGGTTCCCGCTGTTCCA
TAA
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protein sequence of Ggra6592.t1

>Ggra6592.t1 ID=Ggra6592.t1|Name=Ggra6592.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=451bp
MHTRCVPRAAILTPGLLVVAGGVVAFALSAALGANDVANSLGTSVGTGAI
KVPVALAIGAVMEFAGAVLFGSTVTKTISSGVVTIGAATFAAPVSYMLGM
LAVLFGCTVWMGVATKFGLPVSSTHSVVGALIGLGLVSGWGINYGAVQRI
VASWFLSPLIGAVISTMLYKIISVAIVDAKRPAQATRRFLPLLAGAASFV
LTMFVLGKGVRFAQALTPDRVFYIAMGVAFACSGVAGALATAIHSRQYIA
RKFGINGDGTLSGAPSLSVSEQQEDVERIFKVLQVVTACLLSFSHGSNDV
SNAIGPFAAIYSMWRNNGRIDGMVTIPPWVLVLGGLGISTGLGLFGKPVM
ETVGKKITKLKPTMGFAVELSTALTVLVASEMGLPVSTTHTLIGCIVAIG
LSNGDSKAVNKNTLASIAGSWGVTLPFSALVTVLFYVALRPFLPVVPAVP
*
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mRNA from alignment at tig00000081_pilon:478868..480220-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6592.t1 ID=Ggra6592.t1|Name=Ggra6592.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000081_pilon:478868..480220- (Gracilaria gracilis GNS1m male)
ATGCACACCAGATGCGTGCCTCGCGCCGCCATTCTCACCCCCGGGCTCTT
GGTGGTTGCTGGTGGCGTCGTTGCCTTTGCCTTGAGCGCCGCCTTGGGCG
CCAATGACGTTGCCAATTCGCTCGGTACTTCTGTGGGCACGGGCGCTATC
AAGGTGCCGGTTGCGCTTGCTATTGGCGCTGTTATGGAGTTTGCGGGCGC
CGTCTTGTTTGGCAGCACCGTCACAAAGACCATTTCGTCGGGCGTCGTCA
CTATTGGCGCCGCTACCTTCGCTGCGCCTGTTAGCTATATGCTGGGCATG
CTCGCCGTGCTGTTTGGCTGTACCGTGTGGATGGGCGTTGCCACCAAGTT
CGGTCTGCCCGTTTCGTCCACTCACTCCGTCGTCGGTGCGCTCATCGGCC
TGGGTTTGGTGTCTGGCTGGGGCATTAACTACGGCGCTGTGCAACGAATT
GTGGCTAGCTGGTTCCTGTCGCCGCTTATTGGTGCCGTCATTTCAACCAT
GCTGTACAAGATCATCAGCGTGGCCATCGTGGACGCAAAGAGACCGGCGC
AGGCTACTCGTCGCTTCTTGCCGCTGTTGGCGGGCGCCGCGTCTTTCGTG
CTCACTATGTTTGTCTTGGGCAAGGGTGTGCGTTTTGCGCAGGCTCTCAC
ACCTGATCGCGTGTTCTACATCGCAATGGGCGTCGCCTTTGCGTGCTCTG
GTGTGGCGGGCGCGTTGGCCACTGCCATCCATTCTAGGCAATACATCGCA
CGCAAGTTTGGCATAAATGGTGATGGAACTCTGTCCGGTGCGCCCAGCCT
GTCAGTTTCAGAGCAGCAAGAAGACGTGGAACGCATTTTCAAGGTTTTGC
AGGTGGTCACGGCGTGTTTGCTGTCGTTCTCGCATGGATCGAATGATGTG
TCCAACGCCATTGGACCGTTTGCGGCCATTTACTCCATGTGGAGGAATAA
CGGGCGGATAGATGGAATGGTGACGATTCCACCGTGGGTGTTGGTGTTAG
GCGGTCTGGGTATCTCCACTGGGCTGGGCTTGTTTGGAAAGCCAGTGATG
GAAACGGTTGGCAAAAAGATCACCAAGCTCAAGCCGACGATGGGATTTGC
TGTAGAGCTGAGCACGGCACTGACGGTGCTCGTAGCTTCGGAAATGGGAC
TGCCGGTTTCTACTACTCATACGTTGATCGGGTGCATCGTGGCTATCGGC
TTATCAAATGGTGATTCAAAGGCGGTGAACAAGAACACTCTGGCGAGTAT
TGCGGGCTCTTGGGGGGTGACGTTGCCGTTTTCAGCGTTGGTTACTGTGC
TATTTTACGTAGCTCTTCGGCCATTCTTACCCGTGGTTCCCGCTGTTCCA
TAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:478868..480220-

>Ggra6592.t1 ID=Ggra6592.t1|Name=Ggra6592.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000081_pilon:478868..480220- (Gracilaria gracilis GNS1m male)
ATGCACACCAGATGCGTGCCTCGCGCCGCCATTCTCACCCCCGGGCTCTT
GGTGGTTGCTGGTGGCGTCGTTGCCTTTGCCTTGAGCGCCGCCTTGGGCG
CCAATGACGTTGCCAATTCGCTCGGTACTTCTGTGGGCACGGGCGCTATC
AAGGTGCCGGTTGCGCTTGCTATTGGCGCTGTTATGGAGTTTGCGGGCGC
CGTCTTGTTTGGCAGCACCGTCACAAAGACCATTTCGTCGGGCGTCGTCA
CTATTGGCGCCGCTACCTTCGCTGCGCCTGTTAGCTATATGCTGGGCATG
CTCGCCGTGCTGTTTGGCTGTACCGTGTGGATGGGCGTTGCCACCAAGTT
CGGTCTGCCCGTTTCGTCCACTCACTCCGTCGTCGGTGCGCTCATCGGCC
TGGGTTTGGTGTCTGGCTGGGGCATTAACTACGGCGCTGTGCAACGAATT
GTGGCTAGCTGGTTCCTGTCGCCGCTTATTGGTGCCGTCATTTCAACCAT
GCTGTACAAGATCATCAGCGTGGCCATCGTGGACGCAAAGAGACCGGCGC
AGGCTACTCGTCGCTTCTTGCCGCTGTTGGCGGGCGCCGCGTCTTTCGTG
CTCACTATGTTTGTCTTGGGCAAGGGTGTGCGTTTTGCGCAGGCTCTCAC
ACCTGATCGCGTGTTCTACATCGCAATGGGCGTCGCCTTTGCGTGCTCTG
GTGTGGCGGGCGCGTTGGCCACTGCCATCCATTCTAGGCAATACATCGCA
CGCAAGTTTGGCATAAATGGTGATGGAACTCTGTCCGGTGCGCCCAGCCT
GTCAGTTTCAGAGCAGCAAGAAGACGTGGAACGCATTTTCAAGGTTTTGC
AGGTGGTCACGGCGTGTTTGCTGTCGTTCTCGCATGGATCGAATGATGTG
TCCAACGCCATTGGACCGTTTGCGGCCATTTACTCCATGTGGAGGAATAA
CGGGCGGATAGATGGAATGGTGACGATTCCACCGTGGGTGTTGGTGTTAG
GCGGTCTGGGTATCTCCACTGGGCTGGGCTTGTTTGGAAAGCCAGTGATG
GAAACGGTTGGCAAAAAGATCACCAAGCTCAAGCCGACGATGGGATTTGC
TGTAGAGCTGAGCACGGCACTGACGGTGCTCGTAGCTTCGGAAATGGGAC
TGCCGGTTTCTACTACTCATACGTTGATCGGGTGCATCGTGGCTATCGGC
TTATCAAATGGTGATTCAAAGGCGGTGAACAAGAACACTCTGGCGAGTAT
TGCGGGCTCTTGGGGGGTGACGTTGCCGTTTTCAGCGTTGGTTACTGTGC
TATTTTACGTAGCTCTTCGGCCATTCTTACCCGTGGTTCCCGCTGTTCCA
TAA
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