Ggra6590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6590.t1
Unique NameGgra6590.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:457206..460334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6590Ggra6590Gracilaria gracilis GNS1m malegenetig00000081_pilon 457206..460334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1Ggra6590.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 457206..460334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1.stop1Ggra6590.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 457206..457208 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1.CDS1Ggra6590.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 457206..457698 -
Ggra6590.t1.CDS2Ggra6590.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 460198..460334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1.exon1Ggra6590.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 457206..457698 -
Ggra6590.t1.exon2Ggra6590.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 460198..460334 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1.intron1Ggra6590.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 457699..460197 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6590.t1.start1Ggra6590.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 460332..460334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6590.t1 ID=Ggra6590.t1|Name=Ggra6590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MLRGLGVHTHRSAGLDNISCIHDLTEDFAIAIVIKFFGRKNWDPIRLALQ
QQQQVRDNDNALLALKKQLGLALKKQLGLALICARHAYQERDTEAVKLAR
LSAWLRNQQASLLADRTDAPRLLDDVNACVAVFNDVLLQHPAPPALRCAI
QHLVSAAELARVNLSGPIVPFNAVYLDDDEAKSVTSCEWSLVDDLDAQLN
TLVEREQLL*
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spliced messenger RNA

>Ggra6590.t1 ID=Ggra6590.t1|Name=Ggra6590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000081_pilon:457206..460334- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCGTGGGCTTGGGGTTCATACGCACCGCTCCGCCGGGCTCGACAA
TATTTCGTGCATTCATGACCTCACAGAAGACTTCGCCATAGCGATTGTAA
TCAAATTCTTCGGAAGAAAGAACTGGGATCCCATCCGGCTGGCGCTGCAG
CAGCAGCAGCAGGTACGCGACAACGACAACGCCTTGCTCGCGCTCAAGAA
GCAGCTGGGCCTCGCGCTCAAGAAGCAGCTGGGCCTCGCGCTCATCTGCG
CCAGACACGCATACCAGGAACGCGATACTGAAGCCGTCAAGCTGGCCAGG
CTGTCTGCCTGGCTCAGAAATCAGCAGGCGTCGTTGTTGGCGGATCGCAC
CGATGCTCCCAGGCTTCTGGATGACGTCAACGCCTGTGTGGCCGTCTTCA
ACGACGTGCTGCTGCAGCACCCCGCCCCACCCGCGCTACGTTGCGCCATT
CAGCACCTCGTGTCGGCCGCAGAGCTAGCGCGCGTCAACCTCTCCGGACC
GATCGTGCCCTTTAACGCCGTCTACCTTGACGACGACGAAGCCAAGAGCG
TCACATCCTGCGAATGGTCGCTGGTCGATGATCTGGATGCACAGCTCAAT
ACGCTTGTCGAGCGTGAGCAGCTACTCTAG
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protein sequence of Ggra6590.t1

>Ggra6590.t1 ID=Ggra6590.t1|Name=Ggra6590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MLRGLGVHTHRSAGLDNISCIHDLTEDFAIAIVIKFFGRKNWDPIRLALQ
QQQQVRDNDNALLALKKQLGLALKKQLGLALICARHAYQERDTEAVKLAR
LSAWLRNQQASLLADRTDAPRLLDDVNACVAVFNDVLLQHPAPPALRCAI
QHLVSAAELARVNLSGPIVPFNAVYLDDDEAKSVTSCEWSLVDDLDAQLN
TLVEREQLL*
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mRNA from alignment at tig00000081_pilon:457206..460334-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6590.t1 ID=Ggra6590.t1|Name=Ggra6590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3129bp|location=Sequence derived from alignment at tig00000081_pilon:457206..460334- (Gracilaria gracilis GNS1m male)
ATGCTCCGTGGGCTTGGGGTTCATACGCACCGCTCCGCCGGGCTCGACAA
TATTTCGTGCATTCATGACCTCACAGAAGACTTCGCCATAGCGATTGTAA
TCAAATTCTTCGGAAGAAAGAACTGGGATCCCATCCGGTGTGTGCCATGC
GTTTCGAGTTCTTCGAACAGACGATTTCGAAACGAATCGGGGTCGAGTTT
GGTTTGAATGTTACGCTTTGGAGTCTTTGCGACACCTGTTCCCAGAGTGG
GGCGCAATTCCTTGGACGCCATCTGAAAGTTAAAAGCGAGAAACGGTTCT
AGATCGCAGCCAGGGGAACGCGATAGAGATGAAATCTGAAACACAAGAAA
ACGGCTTGTACAAAGGCGTAATAGAGCAAGGCGTCCGGCGACGCGACACA
GATCAACGATGGCACACGGTGGCCTCGGGGCGGCGTCATCGTGGAGACTG
TCCACTGGAGAGTCCAAATAGCTCACGTTTGCACGTGGCACATGCGCTGC
ACAGTCGCATGTTTTGCGCCGCTTTGTTTGTGAACGTTTGGAATCGTAAG
GTTACGATGCGCAGATTCGGTGTCGCTAGCTGCAGGTCTTCCACGCGGAA
CGGTCAGACAACGACACCCACCGCGCGCGTTGCGCTTTAGAGCGCGCCTC
TCCAACCGCATCTTCATGTGCCTGTCCGTGCCCCCCCACCTCCCACCGCC
ATGTCACCGCTACCGCCGTTACCCTTGTTCAACACATCTCCTTCCTTCAC
CCCGAGTCCTTCCTTCCCGCTCGCCCACCAATCCCGCAATCATGGACGTC
CAACGAGCCGTCTCCAACCTGCATCTCCGCCACTCAATTGCCCTTCCAAT
GTCCTCGCTTGTGTCTACATCTCTCTTCTCCGTGCCAGTTGCTCCCCCAG
AAGCGTCTCCAATGGCATCGTCTCCCTCTACGCTCTTTACCACCTTCGTT
TGGCGCGACGCCGGCGCGCAGGTCAAATTGGCAGGCAGTGTTGATGACTG
GCGCAAACAAAATCCTTCTTGACAAACAAGATCTTCTTTGCTCACAACGA
ACGAATTATGTCCACATCGCTTACGGAGGTCCACTGGAGTAACACATTTC
TTCTCCATATCATACCCTGCACAAGTAGTATTATCTGAACACAAAGAGAT
TTTCGCACTGCAGTCACCTCCCTTGGGGTTCTTGCAGAACCCTTTCTCAC
AGACTAATTCTTTCCTGCAAACACTGAATGCATCCTGCCATACAAGGCTT
TCGAAGTTTCTTAGGTGCCACGCATTTCTGCTTCGTATCTGTATCAGTGC
ATACGGAGCCGTCCACACAAACAGACCCCTTTGGCTCGCAATCCTTACCT
TTCAGAACTTTGCAGTATCCTTCTTCACAAGTCAAATCAGCTTCAAAAAC
CGAAAAACGGTCCTGACCGCACTTCTTTCCTACACTCTTAGGTTTAGCAC
ACTCTTTCTTTCGGCTATGCCTGCACACACTGTGCCCTTGGCGCAAATTG
CTCCCTGAAAGAAACGATCACCTCCACGGGGAATCTTCTCCATGCACATG
TTCTGAACATAAGTCAATCCAGGTTCGCAAATGAGTACGGAGTATGATCA
CAAGACTTTCCACGTTTAACCTTCTTCTACACAACTTCAAATGCACCGTC
CCGACACAGGTCGTACCAGGCTCACACTTAGATCCTTCAAAAGTACACTT
CATTCCATGACTCACGAATGACTGAGCGCCACTAAGATTCTTGCAAGTAA
AGCCTTTATTCCAGACAGGAAACGGGTGTTTTCCACATTGCTTACCGATC
GCCTTCGGAGAAACACATACCTTCTTCACGGCTGGGCCAGCGATTACCTT
GTCCTTCGGGCACACCGGACAACCATTTCCAGTCCCATACTTGTCAGCAA
CAGACGTCGCCGACCACGAGCTCACTGCCGCAATCTGTGCCACCGCGAAG
CTCGCCGCACTGCTGTCGGGCGCGTTCGCTGCCGTTTTCGCGTATAGGCG
CGCCGCAGCGCATTGCCAGAGGCCTTCCCACCAGCGCGCTGCTGCTGTGC
CGCGGCGTCTCAAGCGATGAAGCCACCTTCTGGCGCGCGTTTTGCGCGCA
ACTACCCGCCGAAAGGCGGAGTCACGACGGCGGCGGCGGCGAAAGCGGAG
GTGATGTGGATGAAAGCGGAGGTGTTGGCGGGAGATATGGCGATGGGGAC
GGTGGCGGCGCCGAGATGGTGCGCGACGTAAATGCGCGCGCGCAGCGTAG
TCTAACCCTGGCGGTGGCGCACGTCGACCACGTCCGCCACGTGGGCGTAT
AAGGCGCACGCGCGTGCGCTTGTTCACAGCTCTCGCCCAGCCATTATTGC
CACGGATCAGCGGCGCCGCCGCGATGGGCTCGCCGTCATTTTCACCGGGC
CGTCGCGCGCGCGCCACCCCCCACCCCCATCGCGATCCGCACCAAGCGCG
TGCTGCAGGCCATAGCCACTGCGCGCCGCGAAGTGTCGTCCTTTCTCAGC
AGCTTTTCGGCCCCAAAGCCGCCGCGCACGCCACCCAATGCCACCGCTGC
TACCGCCGCCGCCGCTTCCGCCGCCGCGGCCTCGGGGAAGGAATCGTGGA
GGCGGTCGCTCGTGCTCCCGCTGGATGACGTGCCAGGCTGGCGCTGCAGC
AGCAGCAGCAGGTACGCGACAACGACAACGCCTTGCTCGCGCTCAAGAAG
CAGCTGGGCCTCGCGCTCAAGAAGCAGCTGGGCCTCGCGCTCATCTGCGC
CAGACACGCATACCAGGAACGCGATACTGAAGCCGTCAAGCTGGCCAGGC
TGTCTGCCTGGCTCAGAAATCAGCAGGCGTCGTTGTTGGCGGATCGCACC
GATGCTCCCAGGCTTCTGGATGACGTCAACGCCTGTGTGGCCGTCTTCAA
CGACGTGCTGCTGCAGCACCCCGCCCCACCCGCGCTACGTTGCGCCATTC
AGCACCTCGTGTCGGCCGCAGAGCTAGCGCGCGTCAACCTCTCCGGACCG
ATCGTGCCCTTTAACGCCGTCTACCTTGACGACGACGAAGCCAAGAGCGT
CACATCCTGCGAATGGTCGCTGGTCGATGATCTGGATGCACAGCTCAATA
CGCTTGTCGAGCGTGAGCAGCTACTCTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:457206..460334-

>Ggra6590.t1 ID=Ggra6590.t1|Name=Ggra6590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000081_pilon:457206..460334- (Gracilaria gracilis GNS1m male)
ATGCTCCGTGGGCTTGGGGTTCATACGCACCGCTCCGCCGGGCTCGACAA
TATTTCGTGCATTCATGACCTCACAGAAGACTTCGCCATAGCGATTGTAA
TCAAATTCTTCGGAAGAAAGAACTGGGATCCCATCCGGCTGGCGCTGCAG
CAGCAGCAGCAGGTACGCGACAACGACAACGCCTTGCTCGCGCTCAAGAA
GCAGCTGGGCCTCGCGCTCAAGAAGCAGCTGGGCCTCGCGCTCATCTGCG
CCAGACACGCATACCAGGAACGCGATACTGAAGCCGTCAAGCTGGCCAGG
CTGTCTGCCTGGCTCAGAAATCAGCAGGCGTCGTTGTTGGCGGATCGCAC
CGATGCTCCCAGGCTTCTGGATGACGTCAACGCCTGTGTGGCCGTCTTCA
ACGACGTGCTGCTGCAGCACCCCGCCCCACCCGCGCTACGTTGCGCCATT
CAGCACCTCGTGTCGGCCGCAGAGCTAGCGCGCGTCAACCTCTCCGGACC
GATCGTGCCCTTTAACGCCGTCTACCTTGACGACGACGAAGCCAAGAGCG
TCACATCCTGCGAATGGTCGCTGGTCGATGATCTGGATGCACAGCTCAAT
ACGCTTGTCGAGCGTGAGCAGCTACTCTAG
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