Ggra6583.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6583.t1
Unique Name	Ggra6583.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	414

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:341098..342339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	529818.AMSG_01875T0
PFAMs	Aminotran_1_2
Max annot lvl	2759\|Eukaryota
Evalue	2.23e-139
EggNOG OGs	COG0436@1\|root,KOG0257@2759\|Eukaryota
Description	transferase activity, transferring nitrogenous groups
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6583	Ggra6583	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 341098..342339 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6583.t1.start1	Ggra6583.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 341098..341100 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6583.t1.CDS1	Ggra6583.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 341098..342339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6583.t1.exon1	Ggra6583.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 341098..342339 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6583.t1.stop1	Ggra6583.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 342337..342339 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6583.t1	Ggra6583.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 341098..342339 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:341098..342339+
coding sequence from alignment at tig00000081_pilon:341098..342339+

mRNA sequence

>Ggra6583.t1 ID=Ggra6583.t1|Name=Ggra6583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=414bp
MGSVANYRDPLADRLGRLGTETAYAVALEAGQIKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNEGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETEDGFVLDVSEMESKITSRTKAIFLNNFQNPMGVAHTIQELEDIAAL
CIEKDLFVFSDDPYYQIRFSDFPQNDFMHIAKMPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAK
FTKDMVAQLEERRDVLYKVLNQVPGFKAIKPKATFYMMCNVTEAMSKMGI
TNIEEFRSKVLQSTGVSFCTRAHFGTPIPGETEMYVRFAFSGVTVEQIEA
AGKALKPFLSQFF*

spliced messenger RNA

>Ggra6583.t1 ID=Ggra6583.t1|Name=Ggra6583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000081_pilon:341098..342339+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCCGTCGCTAACTACAGAGACCCCTTGGCCGACCGTCTAGGCCG
CCTTGGTACTGAGACTGCGTATGCCGTCGCCTTGGAGGCCGGTCAAATTA
AGGCCACTGGTAAGACTGTGTATCCCTTCCACATCGGTGACCTCAACTTC
CGCACACCCAAGGTCGTCGTGGACGCCTGCAAGCAGGCGCTGGATGATGG
CTTCACTGGTTACTGTCCCGCCGCTGGTATCCCGTCGCTGAGAGCCGCTC
TCGCCGACCACTACAATCAGGTGTTCGGACTGGAGTACTCCGCTTCCAAC
GTGTCCATCCAGAGCGGAGGAAAGCCTGGCATTGGAAAATTCCTCATGTG
TGTGTGCAATGAGGGCGATGAGGTGCTTTTCCCCAGCCCGGGTTACCCCA
TCTACGAGAGCATGGCTCGCTTCCTCAACACCAAGCCGGTGCCATACTGC
TACAAGGAGACTGAGGACGGCTTCGTGTTGGACGTTTCTGAAATGGAGTC
CAAGATTACCAGCCGTACCAAGGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCTCACACCATTCAGGAATTGGAGGACATTGCGGCGCTC
TGCATCGAGAAGGACTTGTTCGTGTTCTCAGATGACCCGTACTACCAGAT
TAGGTTCTCGGACTTTCCGCAGAATGACTTCATGCACATCGCCAAAATGC
CTGGAATGCTGTCGCGCACTGTGTGTGACTACACGTTCTCCAAGAGCTTT
GCCATGACTGGATGGCGTCTGGGAGGTGTGCTTGGCCCCAAGTGGTTGAT
CGACCAGGTGACCAAGATTAACACCAACGACGAGGCTTGCACCACGCACT
TTGTGCAGGTGGCGGGTGTGACGGCACTAACCGACCCTGCTGCCGCCAAG
TTCACCAAGGACATGGTGGCGCAACTGGAGGAACGTCGCGACGTGTTGTA
CAAAGTGTTGAACCAAGTACCTGGCTTCAAGGCCATCAAGCCAAAGGCTA
CGTTCTACATGATGTGCAACGTGACGGAGGCTATGAGCAAGATGGGTATC
ACTAACATCGAAGAGTTCAGATCAAAGGTGTTGCAAAGTACCGGCGTGTC
GTTCTGTACGAGAGCGCACTTTGGAACGCCTATTCCGGGCGAGACGGAGA
TGTACGTGCGGTTTGCGTTCTCGGGGGTGACGGTGGAGCAAATTGAGGCG
GCTGGGAAGGCGCTCAAGCCGTTCCTTTCGCAGTTCTTCTAG

protein sequence of Ggra6583.t1

>Ggra6583.t1 ID=Ggra6583.t1|Name=Ggra6583.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=414bp
MGSVANYRDPLADRLGRLGTETAYAVALEAGQIKATGKTVYPFHIGDLNF
RTPKVVVDACKQALDDGFTGYCPAAGIPSLRAALADHYNQVFGLEYSASN
VSIQSGGKPGIGKFLMCVCNEGDEVLFPSPGYPIYESMARFLNTKPVPYC
YKETEDGFVLDVSEMESKITSRTKAIFLNNFQNPMGVAHTIQELEDIAAL
CIEKDLFVFSDDPYYQIRFSDFPQNDFMHIAKMPGMLSRTVCDYTFSKSF
AMTGWRLGGVLGPKWLIDQVTKINTNDEACTTHFVQVAGVTALTDPAAAK
FTKDMVAQLEERRDVLYKVLNQVPGFKAIKPKATFYMMCNVTEAMSKMGI
TNIEEFRSKVLQSTGVSFCTRAHFGTPIPGETEMYVRFAFSGVTVEQIEA
AGKALKPFLSQFF*

mRNA from alignment at tig00000081_pilon:341098..342339+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6583.t1 ID=Ggra6583.t1|Name=Ggra6583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00000081_pilon:341098..342339+ (Gracilaria gracilis GNS1m male)
ATGGGTTCCGTCGCTAACTACAGAGACCCCTTGGCCGACCGTCTAGGCCG
CCTTGGTACTGAGACTGCGTATGCCGTCGCCTTGGAGGCCGGTCAAATTA
AGGCCACTGGTAAGACTGTGTATCCCTTCCACATCGGTGACCTCAACTTC
CGCACACCCAAGGTCGTCGTGGACGCCTGCAAGCAGGCGCTGGATGATGG
CTTCACTGGTTACTGTCCCGCCGCTGGTATCCCGTCGCTGAGAGCCGCTC
TCGCCGACCACTACAATCAGGTGTTCGGACTGGAGTACTCCGCTTCCAAC
GTGTCCATCCAGAGCGGAGGAAAGCCTGGCATTGGAAAATTCCTCATGTG
TGTGTGCAATGAGGGCGATGAGGTGCTTTTCCCCAGCCCGGGTTACCCCA
TCTACGAGAGCATGGCTCGCTTCCTCAACACCAAGCCGGTGCCATACTGC
TACAAGGAGACTGAGGACGGCTTCGTGTTGGACGTTTCTGAAATGGAGTC
CAAGATTACCAGCCGTACCAAGGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCTCACACCATTCAGGAATTGGAGGACATTGCGGCGCTC
TGCATCGAGAAGGACTTGTTCGTGTTCTCAGATGACCCGTACTACCAGAT
TAGGTTCTCGGACTTTCCGCAGAATGACTTCATGCACATCGCCAAAATGC
CTGGAATGCTGTCGCGCACTGTGTGTGACTACACGTTCTCCAAGAGCTTT
GCCATGACTGGATGGCGTCTGGGAGGTGTGCTTGGCCCCAAGTGGTTGAT
CGACCAGGTGACCAAGATTAACACCAACGACGAGGCTTGCACCACGCACT
TTGTGCAGGTGGCGGGTGTGACGGCACTAACCGACCCTGCTGCCGCCAAG
TTCACCAAGGACATGGTGGCGCAACTGGAGGAACGTCGCGACGTGTTGTA
CAAAGTGTTGAACCAAGTACCTGGCTTCAAGGCCATCAAGCCAAAGGCTA
CGTTCTACATGATGTGCAACGTGACGGAGGCTATGAGCAAGATGGGTATC
ACTAACATCGAAGAGTTCAGATCAAAGGTGTTGCAAAGTACCGGCGTGTC
GTTCTGTACGAGAGCGCACTTTGGAACGCCTATTCCGGGCGAGACGGAGA
TGTACGTGCGGTTTGCGTTCTCGGGGGTGACGGTGGAGCAAATTGAGGCG
GCTGGGAAGGCGCTCAAGCCGTTCCTTTCGCAGTTCTTCTAG

Coding sequence (CDS) from alignment at tig00000081_pilon:341098..342339+

>Ggra6583.t1 ID=Ggra6583.t1|Name=Ggra6583.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00000081_pilon:341098..342339+ (Gracilaria gracilis GNS1m male)
ATGGGTTCCGTCGCTAACTACAGAGACCCCTTGGCCGACCGTCTAGGCCG
CCTTGGTACTGAGACTGCGTATGCCGTCGCCTTGGAGGCCGGTCAAATTA
AGGCCACTGGTAAGACTGTGTATCCCTTCCACATCGGTGACCTCAACTTC
CGCACACCCAAGGTCGTCGTGGACGCCTGCAAGCAGGCGCTGGATGATGG
CTTCACTGGTTACTGTCCCGCCGCTGGTATCCCGTCGCTGAGAGCCGCTC
TCGCCGACCACTACAATCAGGTGTTCGGACTGGAGTACTCCGCTTCCAAC
GTGTCCATCCAGAGCGGAGGAAAGCCTGGCATTGGAAAATTCCTCATGTG
TGTGTGCAATGAGGGCGATGAGGTGCTTTTCCCCAGCCCGGGTTACCCCA
TCTACGAGAGCATGGCTCGCTTCCTCAACACCAAGCCGGTGCCATACTGC
TACAAGGAGACTGAGGACGGCTTCGTGTTGGACGTTTCTGAAATGGAGTC
CAAGATTACCAGCCGTACCAAGGCTATCTTCCTCAACAACTTCCAGAACC
CAATGGGTGTGGCTCACACCATTCAGGAATTGGAGGACATTGCGGCGCTC
TGCATCGAGAAGGACTTGTTCGTGTTCTCAGATGACCCGTACTACCAGAT
TAGGTTCTCGGACTTTCCGCAGAATGACTTCATGCACATCGCCAAAATGC
CTGGAATGCTGTCGCGCACTGTGTGTGACTACACGTTCTCCAAGAGCTTT
GCCATGACTGGATGGCGTCTGGGAGGTGTGCTTGGCCCCAAGTGGTTGAT
CGACCAGGTGACCAAGATTAACACCAACGACGAGGCTTGCACCACGCACT
TTGTGCAGGTGGCGGGTGTGACGGCACTAACCGACCCTGCTGCCGCCAAG
TTCACCAAGGACATGGTGGCGCAACTGGAGGAACGTCGCGACGTGTTGTA
CAAAGTGTTGAACCAAGTACCTGGCTTCAAGGCCATCAAGCCAAAGGCTA
CGTTCTACATGATGTGCAACGTGACGGAGGCTATGAGCAAGATGGGTATC
ACTAACATCGAAGAGTTCAGATCAAAGGTGTTGCAAAGTACCGGCGTGTC
GTTCTGTACGAGAGCGCACTTTGGAACGCCTATTCCGGGCGAGACGGAGA
TGTACGTGCGGTTTGCGTTCTCGGGGGTGACGGTGGAGCAAATTGAGGCG
GCTGGGAAGGCGCTCAAGCCGTTCCTTTCGCAGTTCTTCTAG