Ggra6582.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6582.t1
Unique NameGgra6582.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:339063..340055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704264.1
Preferred nameGRHPR
PFAMs2-Hacid_dh,2-Hacid_dh_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00031,RC00042,RC00202,RC00578,RC00670
KEGG koko:K00049,ko:K13403
KEGG ReactionR00465,R01218,R01388,R01392,R01655,R02527
KEGG Pathwayko00260,ko00620,ko00630,ko00670,ko01100,ko01110,ko01120,map00260,map00620,map00630,map00670,map01100,map01110,map01120
KEGG ModuleM00141
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006081,GO:0006082,GO:0006807,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0031907,GO:0031974,GO:0032501,GO:0032787,GO:0034641,GO:0036094,GO:0042579,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070013,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
Evalue1.28e-108
EggNOG OGsCOG1052@1|root,KOG0069@2759|Eukaryota
EC1.1.1.79,1.1.1.81,1.5.1.15,3.5.4.9
Descriptionhydroxypyruvate reductase activity
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6582Ggra6582Gracilaria gracilis GNS1m malegenetig00000081_pilon 339063..340055 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6582.t1.stop1Ggra6582.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 339063..339065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6582.t1.CDS1Ggra6582.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 339063..340055 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6582.t1.exon1Ggra6582.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 339063..340055 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6582.t1.start1Ggra6582.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 340053..340055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6582.t1Ggra6582.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 339063..340055 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6582.t1 ID=Ggra6582.t1|Name=Ggra6582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MVVPPSGTWRVVVTRRVPAPAMDMLRDANLELEVWDSDDPMPHQMLVEKV
SEGCDALYCVLSDKISADVLDAAGERLKLVSTMSVGYNHVDIAECKKRGI
KVTHTPNVLTETTADTALGLVLAACRRFKEATASVSDGTWGTWTPMGMCG
QDVHHSTAGIIGMGRIGSAVARRLHAFNCKILYWDICHIAAVEEQYDAKF
AEMDDLLSQSDIVITLCPLNEHTTHMFNMEKFKKMKKSAVFINPARGELV
NQEDLVEALQQGEIFSAGVDVTTPEPIPTDHPLVKLPNCFILPHIGSASM
GTRTDMAVLASKNVVAAYNGKPLPSAVRGM*
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spliced messenger RNA

>Ggra6582.t1 ID=Ggra6582.t1|Name=Ggra6582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000081_pilon:339063..340055- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGTCCCACCCTCCGGTACCTGGCGCGTCGTCGTCACTCGTCGCGT
GCCAGCGCCCGCCATGGACATGCTTCGCGACGCCAATCTTGAGCTGGAGG
TTTGGGATTCTGATGATCCTATGCCTCATCAAATGCTTGTGGAGAAGGTG
TCCGAGGGGTGTGACGCCCTGTACTGCGTCCTCTCCGACAAGATCAGCGC
CGATGTGCTGGACGCTGCTGGTGAGCGTCTCAAGCTAGTGTCCACCATGA
GCGTTGGATACAATCACGTCGATATTGCTGAGTGTAAAAAGAGAGGTATT
AAGGTCACTCACACTCCCAACGTCCTCACTGAGACCACGGCTGATACTGC
TCTCGGCCTTGTGCTCGCCGCGTGCAGACGCTTCAAAGAGGCCACCGCCT
CCGTCAGTGACGGAACTTGGGGTACTTGGACGCCTATGGGTATGTGCGGT
CAGGACGTTCATCACTCTACCGCTGGTATCATCGGAATGGGTCGCATTGG
TTCCGCCGTTGCCCGACGATTGCACGCCTTCAACTGTAAAATACTGTACT
GGGACATTTGTCATATCGCTGCTGTGGAAGAACAGTACGACGCCAAGTTT
GCTGAAATGGACGACTTACTGTCACAATCTGACATTGTGATCACGCTTTG
TCCGCTCAACGAACACACCACACACATGTTCAACATGGAAAAGTTCAAGA
AAATGAAGAAGAGTGCCGTGTTCATCAACCCGGCCAGAGGAGAGCTTGTC
AATCAAGAGGATCTTGTTGAGGCGTTGCAGCAAGGCGAGATCTTCTCCGC
TGGTGTAGATGTCACAACACCGGAGCCCATTCCAACCGATCACCCGCTTG
TCAAGCTGCCTAATTGTTTTATTCTGCCGCATATTGGCAGCGCGTCCATG
GGAACCAGAACCGATATGGCAGTTTTGGCCTCTAAGAACGTCGTGGCCGC
TTACAACGGGAAACCGCTTCCAAGTGCTGTTAGGGGTATGTAG
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protein sequence of Ggra6582.t1

>Ggra6582.t1 ID=Ggra6582.t1|Name=Ggra6582.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MVVPPSGTWRVVVTRRVPAPAMDMLRDANLELEVWDSDDPMPHQMLVEKV
SEGCDALYCVLSDKISADVLDAAGERLKLVSTMSVGYNHVDIAECKKRGI
KVTHTPNVLTETTADTALGLVLAACRRFKEATASVSDGTWGTWTPMGMCG
QDVHHSTAGIIGMGRIGSAVARRLHAFNCKILYWDICHIAAVEEQYDAKF
AEMDDLLSQSDIVITLCPLNEHTTHMFNMEKFKKMKKSAVFINPARGELV
NQEDLVEALQQGEIFSAGVDVTTPEPIPTDHPLVKLPNCFILPHIGSASM
GTRTDMAVLASKNVVAAYNGKPLPSAVRGM*
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mRNA from alignment at tig00000081_pilon:339063..340055-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6582.t1 ID=Ggra6582.t1|Name=Ggra6582.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000081_pilon:339063..340055- (Gracilaria gracilis GNS1m male)
ATGGTAGTCCCACCCTCCGGTACCTGGCGCGTCGTCGTCACTCGTCGCGT
GCCAGCGCCCGCCATGGACATGCTTCGCGACGCCAATCTTGAGCTGGAGG
TTTGGGATTCTGATGATCCTATGCCTCATCAAATGCTTGTGGAGAAGGTG
TCCGAGGGGTGTGACGCCCTGTACTGCGTCCTCTCCGACAAGATCAGCGC
CGATGTGCTGGACGCTGCTGGTGAGCGTCTCAAGCTAGTGTCCACCATGA
GCGTTGGATACAATCACGTCGATATTGCTGAGTGTAAAAAGAGAGGTATT
AAGGTCACTCACACTCCCAACGTCCTCACTGAGACCACGGCTGATACTGC
TCTCGGCCTTGTGCTCGCCGCGTGCAGACGCTTCAAAGAGGCCACCGCCT
CCGTCAGTGACGGAACTTGGGGTACTTGGACGCCTATGGGTATGTGCGGT
CAGGACGTTCATCACTCTACCGCTGGTATCATCGGAATGGGTCGCATTGG
TTCCGCCGTTGCCCGACGATTGCACGCCTTCAACTGTAAAATACTGTACT
GGGACATTTGTCATATCGCTGCTGTGGAAGAACAGTACGACGCCAAGTTT
GCTGAAATGGACGACTTACTGTCACAATCTGACATTGTGATCACGCTTTG
TCCGCTCAACGAACACACCACACACATGTTCAACATGGAAAAGTTCAAGA
AAATGAAGAAGAGTGCCGTGTTCATCAACCCGGCCAGAGGAGAGCTTGTC
AATCAAGAGGATCTTGTTGAGGCGTTGCAGCAAGGCGAGATCTTCTCCGC
TGGTGTAGATGTCACAACACCGGAGCCCATTCCAACCGATCACCCGCTTG
TCAAGCTGCCTAATTGTTTTATTCTGCCGCATATTGGCAGCGCGTCCATG
GGAACCAGAACCGATATGGCAGTTTTGGCCTCTAAGAACGTCGTGGCCGC
TTACAACGGGAAACCGCTTCCAAGTGCTGTTAGGGGTATGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:339063..340055-

>Ggra6582.t1 ID=Ggra6582.t1|Name=Ggra6582.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000081_pilon:339063..340055- (Gracilaria gracilis GNS1m male)
ATGGTAGTCCCACCCTCCGGTACCTGGCGCGTCGTCGTCACTCGTCGCGT
GCCAGCGCCCGCCATGGACATGCTTCGCGACGCCAATCTTGAGCTGGAGG
TTTGGGATTCTGATGATCCTATGCCTCATCAAATGCTTGTGGAGAAGGTG
TCCGAGGGGTGTGACGCCCTGTACTGCGTCCTCTCCGACAAGATCAGCGC
CGATGTGCTGGACGCTGCTGGTGAGCGTCTCAAGCTAGTGTCCACCATGA
GCGTTGGATACAATCACGTCGATATTGCTGAGTGTAAAAAGAGAGGTATT
AAGGTCACTCACACTCCCAACGTCCTCACTGAGACCACGGCTGATACTGC
TCTCGGCCTTGTGCTCGCCGCGTGCAGACGCTTCAAAGAGGCCACCGCCT
CCGTCAGTGACGGAACTTGGGGTACTTGGACGCCTATGGGTATGTGCGGT
CAGGACGTTCATCACTCTACCGCTGGTATCATCGGAATGGGTCGCATTGG
TTCCGCCGTTGCCCGACGATTGCACGCCTTCAACTGTAAAATACTGTACT
GGGACATTTGTCATATCGCTGCTGTGGAAGAACAGTACGACGCCAAGTTT
GCTGAAATGGACGACTTACTGTCACAATCTGACATTGTGATCACGCTTTG
TCCGCTCAACGAACACACCACACACATGTTCAACATGGAAAAGTTCAAGA
AAATGAAGAAGAGTGCCGTGTTCATCAACCCGGCCAGAGGAGAGCTTGTC
AATCAAGAGGATCTTGTTGAGGCGTTGCAGCAAGGCGAGATCTTCTCCGC
TGGTGTAGATGTCACAACACCGGAGCCCATTCCAACCGATCACCCGCTTG
TCAAGCTGCCTAATTGTTTTATTCTGCCGCATATTGGCAGCGCGTCCATG
GGAACCAGAACCGATATGGCAGTTTTGGCCTCTAAGAACGTCGTGGCCGC
TTACAACGGGAAACCGCTTCCAAGTGCTGTTAGGGGTATGTAG
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