Ggra6581.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6581.t1
Unique NameGgra6581.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:334753..335871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706388.1
PFAMsAbhydrolase_6,DUF818,Hydrolase_4
Max annot lvl2759|Eukaryota
Evalue3.57e-54
EggNOG OGsCOG1073@1|root,KOG1552@2759|Eukaryota
Descriptionpalmitoyl-(protein) hydrolase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6581Ggra6581Gracilaria gracilis GNS1m malegenetig00000081_pilon 334753..335871 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6581.t1.stop1Ggra6581.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 334753..334755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6581.t1.CDS1Ggra6581.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 334753..335871 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6581.t1.exon1Ggra6581.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 334753..335871 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6581.t1.start1Ggra6581.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 335869..335871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6581.t1Ggra6581.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 334753..335871 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6581.t1 ID=Ggra6581.t1|Name=Ggra6581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=373bp
MGQLYSHLVFRPPPICSYQCTQGRIKYVVRDEDDLPSVHSADLFWIQTAL
NFRIPCAFIRHPHSQYVVIYAHTNAEDLGDSIVHAHMISRTLNVDVVAFE
YSGYGLSERPSRRLFRPRSPRVGQRVSPTLSERERKRAEPSEKAICADIM
AVYTFLTDSCAVEPENILVFGRSIGSGPAVYCAINRPIRGLVLIAPIASA
VRVPLKRLNVTLPFIDTFPNIDRAAKIQCPVLVIHGDIDDIVPKLHGEKL
FRKLHRTGCAVNPLWVPNARHNNVVEDFSSLVFGRFLTFLDELKLIPLSP
SPTHSCSHQHFHPDGLPSYEADTDRSTSISFQSHDRSFHTPPRRMASYVR
HSRVKTKPTYGSHPQLSLYAHL*
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spliced messenger RNA

>Ggra6581.t1 ID=Ggra6581.t1|Name=Ggra6581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000081_pilon:334753..335871- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCAGCTTTACTCTCATCTTGTCTTTCGTCCGCCTCCTATATGTTC
CTACCAATGCACGCAAGGTCGAATAAAGTACGTTGTGCGCGACGAAGATG
ACCTCCCGTCCGTGCATTCGGCCGACTTGTTCTGGATTCAAACCGCTCTC
AACTTTCGTATTCCCTGCGCATTTATTCGCCATCCCCATTCTCAATACGT
CGTAATCTACGCCCATACCAACGCAGAAGATCTTGGTGACAGTATTGTTC
ACGCTCACATGATATCGCGCACCCTCAATGTCGACGTTGTTGCATTTGAG
TATTCTGGCTACGGTCTGTCTGAGCGTCCTTCACGTCGCTTGTTCCGTCC
CCGTTCACCTCGTGTTGGTCAGCGTGTTTCACCCACGCTTTCGGAGCGTG
AGCGAAAACGCGCAGAGCCCTCGGAGAAGGCTATTTGTGCTGATATCATG
GCAGTGTACACCTTTCTCACCGACTCATGTGCCGTCGAACCGGAGAACAT
CCTGGTCTTCGGGCGTAGTATTGGAAGTGGCCCTGCTGTGTACTGCGCCA
TTAACAGACCTATTCGAGGTCTTGTTCTCATTGCTCCTATCGCATCTGCC
GTCCGTGTTCCGCTCAAGCGGCTTAACGTCACTTTGCCTTTCATAGACAC
CTTTCCAAACATTGACAGAGCCGCCAAGATTCAGTGTCCAGTACTCGTTA
TTCATGGGGACATTGACGATATTGTTCCGAAGCTACATGGGGAAAAGCTT
TTTCGAAAGCTTCATCGCACCGGCTGTGCTGTCAATCCTCTATGGGTCCC
GAATGCTCGTCACAACAATGTCGTCGAGGACTTTTCGTCACTTGTGTTCG
GTCGTTTCCTTACATTTCTTGATGAACTCAAACTCATACCACTCTCTCCC
TCTCCCACGCACTCCTGCTCACACCAGCACTTTCATCCCGATGGATTGCC
GTCGTACGAAGCCGACACCGACCGATCAACGTCAATATCCTTCCAATCGC
ACGATCGATCATTTCACACACCTCCGAGACGGATGGCAAGTTACGTGAGG
CATAGTCGAGTCAAAACAAAGCCGACATATGGCTCGCATCCACAGCTGAG
TTTATATGCTCACTTGTGA
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protein sequence of Ggra6581.t1

>Ggra6581.t1 ID=Ggra6581.t1|Name=Ggra6581.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=373bp
MGQLYSHLVFRPPPICSYQCTQGRIKYVVRDEDDLPSVHSADLFWIQTAL
NFRIPCAFIRHPHSQYVVIYAHTNAEDLGDSIVHAHMISRTLNVDVVAFE
YSGYGLSERPSRRLFRPRSPRVGQRVSPTLSERERKRAEPSEKAICADIM
AVYTFLTDSCAVEPENILVFGRSIGSGPAVYCAINRPIRGLVLIAPIASA
VRVPLKRLNVTLPFIDTFPNIDRAAKIQCPVLVIHGDIDDIVPKLHGEKL
FRKLHRTGCAVNPLWVPNARHNNVVEDFSSLVFGRFLTFLDELKLIPLSP
SPTHSCSHQHFHPDGLPSYEADTDRSTSISFQSHDRSFHTPPRRMASYVR
HSRVKTKPTYGSHPQLSLYAHL*
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mRNA from alignment at tig00000081_pilon:334753..335871-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6581.t1 ID=Ggra6581.t1|Name=Ggra6581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000081_pilon:334753..335871- (Gracilaria gracilis GNS1m male)
ATGGGGCAGCTTTACTCTCATCTTGTCTTTCGTCCGCCTCCTATATGTTC
CTACCAATGCACGCAAGGTCGAATAAAGTACGTTGTGCGCGACGAAGATG
ACCTCCCGTCCGTGCATTCGGCCGACTTGTTCTGGATTCAAACCGCTCTC
AACTTTCGTATTCCCTGCGCATTTATTCGCCATCCCCATTCTCAATACGT
CGTAATCTACGCCCATACCAACGCAGAAGATCTTGGTGACAGTATTGTTC
ACGCTCACATGATATCGCGCACCCTCAATGTCGACGTTGTTGCATTTGAG
TATTCTGGCTACGGTCTGTCTGAGCGTCCTTCACGTCGCTTGTTCCGTCC
CCGTTCACCTCGTGTTGGTCAGCGTGTTTCACCCACGCTTTCGGAGCGTG
AGCGAAAACGCGCAGAGCCCTCGGAGAAGGCTATTTGTGCTGATATCATG
GCAGTGTACACCTTTCTCACCGACTCATGTGCCGTCGAACCGGAGAACAT
CCTGGTCTTCGGGCGTAGTATTGGAAGTGGCCCTGCTGTGTACTGCGCCA
TTAACAGACCTATTCGAGGTCTTGTTCTCATTGCTCCTATCGCATCTGCC
GTCCGTGTTCCGCTCAAGCGGCTTAACGTCACTTTGCCTTTCATAGACAC
CTTTCCAAACATTGACAGAGCCGCCAAGATTCAGTGTCCAGTACTCGTTA
TTCATGGGGACATTGACGATATTGTTCCGAAGCTACATGGGGAAAAGCTT
TTTCGAAAGCTTCATCGCACCGGCTGTGCTGTCAATCCTCTATGGGTCCC
GAATGCTCGTCACAACAATGTCGTCGAGGACTTTTCGTCACTTGTGTTCG
GTCGTTTCCTTACATTTCTTGATGAACTCAAACTCATACCACTCTCTCCC
TCTCCCACGCACTCCTGCTCACACCAGCACTTTCATCCCGATGGATTGCC
GTCGTACGAAGCCGACACCGACCGATCAACGTCAATATCCTTCCAATCGC
ACGATCGATCATTTCACACACCTCCGAGACGGATGGCAAGTTACGTGAGG
CATAGTCGAGTCAAAACAAAGCCGACATATGGCTCGCATCCACAGCTGAG
TTTATATGCTCACTTGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:334753..335871-

>Ggra6581.t1 ID=Ggra6581.t1|Name=Ggra6581.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000081_pilon:334753..335871- (Gracilaria gracilis GNS1m male)
ATGGGGCAGCTTTACTCTCATCTTGTCTTTCGTCCGCCTCCTATATGTTC
CTACCAATGCACGCAAGGTCGAATAAAGTACGTTGTGCGCGACGAAGATG
ACCTCCCGTCCGTGCATTCGGCCGACTTGTTCTGGATTCAAACCGCTCTC
AACTTTCGTATTCCCTGCGCATTTATTCGCCATCCCCATTCTCAATACGT
CGTAATCTACGCCCATACCAACGCAGAAGATCTTGGTGACAGTATTGTTC
ACGCTCACATGATATCGCGCACCCTCAATGTCGACGTTGTTGCATTTGAG
TATTCTGGCTACGGTCTGTCTGAGCGTCCTTCACGTCGCTTGTTCCGTCC
CCGTTCACCTCGTGTTGGTCAGCGTGTTTCACCCACGCTTTCGGAGCGTG
AGCGAAAACGCGCAGAGCCCTCGGAGAAGGCTATTTGTGCTGATATCATG
GCAGTGTACACCTTTCTCACCGACTCATGTGCCGTCGAACCGGAGAACAT
CCTGGTCTTCGGGCGTAGTATTGGAAGTGGCCCTGCTGTGTACTGCGCCA
TTAACAGACCTATTCGAGGTCTTGTTCTCATTGCTCCTATCGCATCTGCC
GTCCGTGTTCCGCTCAAGCGGCTTAACGTCACTTTGCCTTTCATAGACAC
CTTTCCAAACATTGACAGAGCCGCCAAGATTCAGTGTCCAGTACTCGTTA
TTCATGGGGACATTGACGATATTGTTCCGAAGCTACATGGGGAAAAGCTT
TTTCGAAAGCTTCATCGCACCGGCTGTGCTGTCAATCCTCTATGGGTCCC
GAATGCTCGTCACAACAATGTCGTCGAGGACTTTTCGTCACTTGTGTTCG
GTCGTTTCCTTACATTTCTTGATGAACTCAAACTCATACCACTCTCTCCC
TCTCCCACGCACTCCTGCTCACACCAGCACTTTCATCCCGATGGATTGCC
GTCGTACGAAGCCGACACCGACCGATCAACGTCAATATCCTTCCAATCGC
ACGATCGATCATTTCACACACCTCCGAGACGGATGGCAAGTTACGTGAGG
CATAGTCGAGTCAAAACAAAGCCGACATATGGCTCGCATCCACAGCTGAG
TTTATATGCTCACTTGTGA
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