Ggra6580.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6580.t1
Unique NameGgra6580.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length470
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:332363..333772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28564.XP_002488281.1
PFAMsRRM_1
Max annot lvl4751|Fungi
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0032991,GO:0033120,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
Evalue2.32e-45
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,398J3@33154|Opisthokonta,3NXX8@4751|Fungi,3QP61@4890|Ascomycota,20DZ4@147545|Eurotiomycetes,3S82P@5042|Eurotiales
DescriptionmRNA binding post-transcriptional regulator (Csx1)
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6580Ggra6580Gracilaria gracilis GNS1m malegenetig00000081_pilon 332363..333772 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6580.t1.start1Ggra6580.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 332363..332365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6580.t1.CDS1Ggra6580.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 332363..333772 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6580.t1.exon1Ggra6580.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 332363..333772 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6580.t1.stop1Ggra6580.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 333770..333772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6580.t1Ggra6580.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 332363..333772 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6580.t1 ID=Ggra6580.t1|Name=Ggra6580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=470bp
MDENFLRQAVTASGWGPDITRIKVVRDHYSGMHAGYGFLDAASPEAAQRV
IACGSGMPIPGTNRCWRLNMGRNAAVNGTAGTEINIYVGNLEPSVTDYQL
MTAFRPRYGSVRHAKVVCNEYGQSRGYGFVRFADAHDAERAVNEMQGFEF
NNKPIRLSHATGRSRGPNSRGPAHHGYNNHHHTPHNGAGHGPPTNKRPRQ
LMAPDDPTNTTIFIGGTAPHITDELLWREFSTFGELDGVRVPVNKTSFAF
VRFKTRESAMRAKESLSGTHFPPLNAHKPIRVEWASERIPATKPPSVANT
DMPVMNYESGTQSFDPQFSSSYASNVSGANNPMPEGFNNFNSMPNGSSAT
PGSNSTVAGLSQPQPGSVEQNKVSAADTGAVSSIQPTASVVKDGAGATEN
ANSNGSGEAEPPSKRAAVDRPEYAAVATDNTPKKENGMDVKTEAPSGDSP
AMQFSWLNSSSTQPTTSPQ*
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spliced messenger RNA

>Ggra6580.t1 ID=Ggra6580.t1|Name=Ggra6580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000081_pilon:332363..333772+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGAACTTTCTTCGTCAGGCTGTCACCGCAAGCGGCTGGGGCCC
TGACATCACCCGCATCAAGGTTGTCCGCGACCACTACTCTGGTATGCATG
CAGGCTACGGTTTTCTTGACGCCGCGTCGCCAGAAGCTGCTCAAAGAGTC
ATAGCGTGTGGCTCTGGTATGCCTATTCCGGGCACCAACCGTTGTTGGAG
ACTTAACATGGGCCGAAACGCTGCTGTGAACGGCACAGCTGGCACCGAGA
TTAACATTTATGTTGGTAATCTCGAACCCTCCGTCACAGATTACCAGCTC
ATGACTGCTTTCCGCCCTCGCTACGGCTCCGTTCGTCATGCGAAGGTTGT
GTGCAATGAGTATGGCCAGTCTAGAGGATACGGCTTCGTCCGCTTCGCAG
ACGCCCATGATGCGGAGCGCGCCGTCAACGAGATGCAGGGGTTCGAGTTT
AACAACAAGCCCATTCGTCTGTCTCATGCTACGGGACGTTCGCGTGGTCC
CAATTCCAGGGGGCCCGCTCATCATGGCTATAACAATCATCATCATACCC
CTCACAACGGCGCCGGACATGGCCCGCCGACTAACAAACGCCCCCGTCAA
CTTATGGCCCCGGATGATCCCACCAACACTACCATTTTCATAGGCGGTAC
TGCCCCTCACATCACTGACGAGCTACTGTGGCGCGAGTTTTCCACTTTCG
GTGAGCTCGACGGTGTTCGTGTCCCCGTCAACAAGACGAGCTTTGCTTTT
GTGCGATTCAAAACCCGTGAGTCAGCCATGCGTGCCAAGGAGTCTCTGTC
TGGAACCCATTTCCCGCCTCTCAACGCCCACAAGCCCATTCGTGTCGAGT
GGGCTTCTGAGCGCATTCCTGCCACTAAGCCCCCGTCCGTGGCTAACACA
GATATGCCTGTAATGAACTACGAATCGGGTACTCAATCGTTTGACCCGCA
GTTCTCTTCCTCTTACGCATCTAACGTATCAGGGGCCAATAATCCTATGC
CGGAAGGGTTCAATAACTTTAACAGCATGCCTAACGGATCCTCCGCAACC
CCTGGTTCCAACTCAACCGTTGCAGGTCTTTCGCAGCCGCAACCTGGTTC
TGTTGAGCAAAACAAGGTTTCAGCTGCTGATACAGGTGCGGTGTCGTCTA
TACAGCCTACTGCTTCAGTTGTCAAGGATGGCGCCGGCGCTACTGAGAAT
GCAAACTCCAACGGAAGCGGAGAAGCGGAGCCGCCCTCGAAGAGAGCGGC
TGTAGATCGTCCAGAGTACGCTGCGGTTGCCACCGACAACACCCCGAAGA
AGGAAAACGGAATGGATGTCAAGACCGAAGCTCCATCCGGCGACTCCCCG
GCCATGCAATTCTCTTGGCTTAACTCCTCCTCTACCCAGCCCACCACCAG
TCCCCAGTGA
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protein sequence of Ggra6580.t1

>Ggra6580.t1 ID=Ggra6580.t1|Name=Ggra6580.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=470bp
MDENFLRQAVTASGWGPDITRIKVVRDHYSGMHAGYGFLDAASPEAAQRV
IACGSGMPIPGTNRCWRLNMGRNAAVNGTAGTEINIYVGNLEPSVTDYQL
MTAFRPRYGSVRHAKVVCNEYGQSRGYGFVRFADAHDAERAVNEMQGFEF
NNKPIRLSHATGRSRGPNSRGPAHHGYNNHHHTPHNGAGHGPPTNKRPRQ
LMAPDDPTNTTIFIGGTAPHITDELLWREFSTFGELDGVRVPVNKTSFAF
VRFKTRESAMRAKESLSGTHFPPLNAHKPIRVEWASERIPATKPPSVANT
DMPVMNYESGTQSFDPQFSSSYASNVSGANNPMPEGFNNFNSMPNGSSAT
PGSNSTVAGLSQPQPGSVEQNKVSAADTGAVSSIQPTASVVKDGAGATEN
ANSNGSGEAEPPSKRAAVDRPEYAAVATDNTPKKENGMDVKTEAPSGDSP
AMQFSWLNSSSTQPTTSPQ*
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mRNA from alignment at tig00000081_pilon:332363..333772+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6580.t1 ID=Ggra6580.t1|Name=Ggra6580.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1410bp|location=Sequence derived from alignment at tig00000081_pilon:332363..333772+ (Gracilaria gracilis GNS1m male)
ATGGACGAGAACTTTCTTCGTCAGGCTGTCACCGCAAGCGGCTGGGGCCC
TGACATCACCCGCATCAAGGTTGTCCGCGACCACTACTCTGGTATGCATG
CAGGCTACGGTTTTCTTGACGCCGCGTCGCCAGAAGCTGCTCAAAGAGTC
ATAGCGTGTGGCTCTGGTATGCCTATTCCGGGCACCAACCGTTGTTGGAG
ACTTAACATGGGCCGAAACGCTGCTGTGAACGGCACAGCTGGCACCGAGA
TTAACATTTATGTTGGTAATCTCGAACCCTCCGTCACAGATTACCAGCTC
ATGACTGCTTTCCGCCCTCGCTACGGCTCCGTTCGTCATGCGAAGGTTGT
GTGCAATGAGTATGGCCAGTCTAGAGGATACGGCTTCGTCCGCTTCGCAG
ACGCCCATGATGCGGAGCGCGCCGTCAACGAGATGCAGGGGTTCGAGTTT
AACAACAAGCCCATTCGTCTGTCTCATGCTACGGGACGTTCGCGTGGTCC
CAATTCCAGGGGGCCCGCTCATCATGGCTATAACAATCATCATCATACCC
CTCACAACGGCGCCGGACATGGCCCGCCGACTAACAAACGCCCCCGTCAA
CTTATGGCCCCGGATGATCCCACCAACACTACCATTTTCATAGGCGGTAC
TGCCCCTCACATCACTGACGAGCTACTGTGGCGCGAGTTTTCCACTTTCG
GTGAGCTCGACGGTGTTCGTGTCCCCGTCAACAAGACGAGCTTTGCTTTT
GTGCGATTCAAAACCCGTGAGTCAGCCATGCGTGCCAAGGAGTCTCTGTC
TGGAACCCATTTCCCGCCTCTCAACGCCCACAAGCCCATTCGTGTCGAGT
GGGCTTCTGAGCGCATTCCTGCCACTAAGCCCCCGTCCGTGGCTAACACA
GATATGCCTGTAATGAACTACGAATCGGGTACTCAATCGTTTGACCCGCA
GTTCTCTTCCTCTTACGCATCTAACGTATCAGGGGCCAATAATCCTATGC
CGGAAGGGTTCAATAACTTTAACAGCATGCCTAACGGATCCTCCGCAACC
CCTGGTTCCAACTCAACCGTTGCAGGTCTTTCGCAGCCGCAACCTGGTTC
TGTTGAGCAAAACAAGGTTTCAGCTGCTGATACAGGTGCGGTGTCGTCTA
TACAGCCTACTGCTTCAGTTGTCAAGGATGGCGCCGGCGCTACTGAGAAT
GCAAACTCCAACGGAAGCGGAGAAGCGGAGCCGCCCTCGAAGAGAGCGGC
TGTAGATCGTCCAGAGTACGCTGCGGTTGCCACCGACAACACCCCGAAGA
AGGAAAACGGAATGGATGTCAAGACCGAAGCTCCATCCGGCGACTCCCCG
GCCATGCAATTCTCTTGGCTTAACTCCTCCTCTACCCAGCCCACCACCAG
TCCCCAGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:332363..333772+

>Ggra6580.t1 ID=Ggra6580.t1|Name=Ggra6580.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1410bp|location=Sequence derived from alignment at tig00000081_pilon:332363..333772+ (Gracilaria gracilis GNS1m male)
ATGGACGAGAACTTTCTTCGTCAGGCTGTCACCGCAAGCGGCTGGGGCCC
TGACATCACCCGCATCAAGGTTGTCCGCGACCACTACTCTGGTATGCATG
CAGGCTACGGTTTTCTTGACGCCGCGTCGCCAGAAGCTGCTCAAAGAGTC
ATAGCGTGTGGCTCTGGTATGCCTATTCCGGGCACCAACCGTTGTTGGAG
ACTTAACATGGGCCGAAACGCTGCTGTGAACGGCACAGCTGGCACCGAGA
TTAACATTTATGTTGGTAATCTCGAACCCTCCGTCACAGATTACCAGCTC
ATGACTGCTTTCCGCCCTCGCTACGGCTCCGTTCGTCATGCGAAGGTTGT
GTGCAATGAGTATGGCCAGTCTAGAGGATACGGCTTCGTCCGCTTCGCAG
ACGCCCATGATGCGGAGCGCGCCGTCAACGAGATGCAGGGGTTCGAGTTT
AACAACAAGCCCATTCGTCTGTCTCATGCTACGGGACGTTCGCGTGGTCC
CAATTCCAGGGGGCCCGCTCATCATGGCTATAACAATCATCATCATACCC
CTCACAACGGCGCCGGACATGGCCCGCCGACTAACAAACGCCCCCGTCAA
CTTATGGCCCCGGATGATCCCACCAACACTACCATTTTCATAGGCGGTAC
TGCCCCTCACATCACTGACGAGCTACTGTGGCGCGAGTTTTCCACTTTCG
GTGAGCTCGACGGTGTTCGTGTCCCCGTCAACAAGACGAGCTTTGCTTTT
GTGCGATTCAAAACCCGTGAGTCAGCCATGCGTGCCAAGGAGTCTCTGTC
TGGAACCCATTTCCCGCCTCTCAACGCCCACAAGCCCATTCGTGTCGAGT
GGGCTTCTGAGCGCATTCCTGCCACTAAGCCCCCGTCCGTGGCTAACACA
GATATGCCTGTAATGAACTACGAATCGGGTACTCAATCGTTTGACCCGCA
GTTCTCTTCCTCTTACGCATCTAACGTATCAGGGGCCAATAATCCTATGC
CGGAAGGGTTCAATAACTTTAACAGCATGCCTAACGGATCCTCCGCAACC
CCTGGTTCCAACTCAACCGTTGCAGGTCTTTCGCAGCCGCAACCTGGTTC
TGTTGAGCAAAACAAGGTTTCAGCTGCTGATACAGGTGCGGTGTCGTCTA
TACAGCCTACTGCTTCAGTTGTCAAGGATGGCGCCGGCGCTACTGAGAAT
GCAAACTCCAACGGAAGCGGAGAAGCGGAGCCGCCCTCGAAGAGAGCGGC
TGTAGATCGTCCAGAGTACGCTGCGGTTGCCACCGACAACACCCCGAAGA
AGGAAAACGGAATGGATGTCAAGACCGAAGCTCCATCCGGCGACTCCCCG
GCCATGCAATTCTCTTGGCTTAACTCCTCCTCTACCCAGCCCACCACCAG
TCCCCAGTGA
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