Ggra6577.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6577.t1
Unique NameGgra6577.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:316295..317695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0RAM6
PFAMsLdh_2
Max annot lvl2836|Bacillariophyta
Evalue1.95e-153
EggNOG OGsCOG2055@1|root,2QRW5@2759|Eukaryota,2XDGM@2836|Bacillariophyta
DescriptionMalate/L-lactate dehydrogenase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6577Ggra6577Gracilaria gracilis GNS1m malegenetig00000081_pilon 316295..317695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1Ggra6577.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 316295..317695 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1.stop1Ggra6577.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 316295..316297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1.CDS1Ggra6577.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 316295..316692 -
Ggra6577.t1.CDS2Ggra6577.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 316780..317695 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1.exon1Ggra6577.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 316295..316692 -
Ggra6577.t1.exon2Ggra6577.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 316780..317695 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1.intron1Ggra6577.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 316693..316779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6577.t1.start1Ggra6577.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 317693..317695 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6577.t1 ID=Ggra6577.t1|Name=Ggra6577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MPSVVSAPGSLRTKLSSLAKRLSGDDAITLNQLLQQWDQGKLSAANGDLP
SAATKATDSAPVVKYAKVEMSFLRQFMKDALVAAGVPADEATIAGEVLEW
ADLHAVTTHGIGRLKPIYIDRINNGILKPTAPFELVNQTETTAVVDGHGG
LGLFIGPKCMDICLEKAKKHGLAMVVVRNSTHYGAAGYYVDKAQKHGCIG
ITGTNARPSIAPTFGVQPMLGTNPLTVGMPSDDGFPFVLDCATSVNQRGK
IEKYEREGKPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSLAPLGGVGDE
MGGYKGYGYATVVELLSSALQGGLNSPKLSGVNKETGEKIPMPLGHFFIA
IDVERFIPLESFKSNVGSFLRQMRASEKDPKGPGRIYTAGELEHEGFLEC
EKAGGIQIPEPLMKDMMAIRERYASIRQKYPKFSFEE*
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spliced messenger RNA

>Ggra6577.t1 ID=Ggra6577.t1|Name=Ggra6577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000081_pilon:316295..317695- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCGTCGTTTCCGCACCGGGTTCACTCCGCACGAAGCTCTCATC
GCTTGCAAAGCGTTTGTCGGGAGATGATGCCATCACGCTCAACCAGTTGT
TGCAGCAATGGGATCAAGGCAAACTCTCGGCCGCAAACGGCGACTTGCCG
TCGGCCGCCACGAAGGCCACGGATTCAGCACCCGTCGTCAAGTATGCCAA
GGTCGAGATGTCCTTTTTGAGGCAGTTCATGAAGGATGCCTTGGTTGCGG
CAGGCGTTCCGGCCGATGAAGCTACTATCGCTGGGGAGGTGTTGGAATGG
GCCGATCTTCACGCAGTTACCACTCATGGTATTGGTCGACTCAAGCCCAT
CTACATTGACCGTATCAACAACGGTATTCTCAAGCCTACTGCTCCGTTTG
AGCTCGTCAACCAGACTGAGACCACTGCCGTTGTTGACGGTCATGGTGGG
CTTGGTCTCTTCATCGGTCCGAAGTGCATGGACATCTGTCTCGAAAAAGC
GAAGAAGCATGGATTGGCCATGGTCGTTGTTAGAAATAGTACTCATTATG
GAGCCGCCGGATACTACGTTGACAAGGCTCAGAAGCATGGTTGCATCGGC
ATCACAGGTACCAATGCGCGCCCCTCAATCGCCCCTACTTTTGGTGTTCA
GCCCATGCTTGGTACCAATCCTTTGACGGTTGGAATGCCTAGTGATGACG
GTTTTCCGTTCGTTTTGGACTGTGCTACCTCTGTGAATCAACGCGGAAAG
ATTGAGAAGTATGAAAGAGAAGGAAAGCCTACCCCGCCTGGTCAGGTTGT
AGATCGTGATGGAAATGTTCGAACTGATACTGCTCAGATTTTGAAGGACT
TACAAACTGGTTATTGCTCTTTGGCGCCGTTGGGGGGTGTCGGTGATGAG
ATGGGAGGCTACAAGGGATATGGATATGCTACAGTTGTAGAACTTTTGTC
TTCTGCACTTCAGGGTGGTCTGAACAGTCCGAAGCTCAGTGGCGTGAACA
AAGAAACTGGGGAAAAGATCCCCATGCCGCTGGGGCACTTCTTCATCGCT
ATCGATGTTGAAAGGTTCATTCCGCTTGAATCGTTCAAGTCGAACGTTGG
ATCGTTCTTGCGTCAAATGCGAGCCTCTGAAAAAGATCCCAAGGGGCCGG
GTCGCATTTACACGGCCGGTGAACTTGAACATGAAGGATTTTTAGAATGC
GAGAAGGCGGGTGGAATTCAAATCCCAGAGCCCTTGATGAAGGATATGAT
GGCGATTCGAGAGCGATACGCTTCCATACGTCAAAAGTATCCCAAGTTTA
GTTTCGAAGAATAG
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protein sequence of Ggra6577.t1

>Ggra6577.t1 ID=Ggra6577.t1|Name=Ggra6577.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MPSVVSAPGSLRTKLSSLAKRLSGDDAITLNQLLQQWDQGKLSAANGDLP
SAATKATDSAPVVKYAKVEMSFLRQFMKDALVAAGVPADEATIAGEVLEW
ADLHAVTTHGIGRLKPIYIDRINNGILKPTAPFELVNQTETTAVVDGHGG
LGLFIGPKCMDICLEKAKKHGLAMVVVRNSTHYGAAGYYVDKAQKHGCIG
ITGTNARPSIAPTFGVQPMLGTNPLTVGMPSDDGFPFVLDCATSVNQRGK
IEKYEREGKPTPPGQVVDRDGNVRTDTAQILKDLQTGYCSLAPLGGVGDE
MGGYKGYGYATVVELLSSALQGGLNSPKLSGVNKETGEKIPMPLGHFFIA
IDVERFIPLESFKSNVGSFLRQMRASEKDPKGPGRIYTAGELEHEGFLEC
EKAGGIQIPEPLMKDMMAIRERYASIRQKYPKFSFEE*
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mRNA from alignment at tig00000081_pilon:316295..317695-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6577.t1 ID=Ggra6577.t1|Name=Ggra6577.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1401bp|location=Sequence derived from alignment at tig00000081_pilon:316295..317695- (Gracilaria gracilis GNS1m male)
ATGCCGTCCGTCGTTTCCGCACCGGGTTCACTCCGCACGAAGCTCTCATC
GCTTGCAAAGCGTTTGTCGGGAGATGATGCCATCACGCTCAACCAGTTGT
TGCAGCAATGGGATCAAGGCAAACTCTCGGCCGCAAACGGCGACTTGCCG
TCGGCCGCCACGAAGGCCACGGATTCAGCACCCGTCGTCAAGTATGCCAA
GGTCGAGATGTCCTTTTTGAGGCAGTTCATGAAGGATGCCTTGGTTGCGG
CAGGCGTTCCGGCCGATGAAGCTACTATCGCTGGGGAGGTGTTGGAATGG
GCCGATCTTCACGCAGTTACCACTCATGGTATTGGTCGACTCAAGCCCAT
CTACATTGACCGTATCAACAACGGTATTCTCAAGCCTACTGCTCCGTTTG
AGCTCGTCAACCAGACTGAGACCACTGCCGTTGTTGACGGTCATGGTGGG
CTTGGTCTCTTCATCGGTCCGAAGTGCATGGACATCTGTCTCGAAAAAGC
GAAGAAGCATGGATTGGCCATGGTCGTTGTTAGAAATAGTACTCATTATG
GAGCCGCCGGATACTACGTTGACAAGGCTCAGAAGCATGGTTGCATCGGC
ATCACAGGTACCAATGCGCGCCCCTCAATCGCCCCTACTTTTGGTGTTCA
GCCCATGCTTGGTACCAATCCTTTGACGGTTGGAATGCCTAGTGATGACG
GTTTTCCGTTCGTTTTGGACTGTGCTACCTCTGTGAATCAACGCGGAAAG
ATTGAGAAGTATGAAAGAGAAGGAAAGCCTACCCCGCCTGGTCAGGTTGT
AGATCGTGATGGAAATGTTCGAACTGATACTGCTCAGATTTTGAAGGACT
TACAAACTGGTTATTGCTCTTTGGCGCCGTTGGGGGGTGTCGGTGATGAG
ATGGGAGGCTACAAGGGTAAGTTAAGGTAATCTATCTCTATAACGCTCTC
CATCACACTAACAAATTCAATTGCAATCACACTCCATCTGCGATATGAAA
CAGGATATGGATATGCTACAGTTGTAGAACTTTTGTCTTCTGCACTTCAG
GGTGGTCTGAACAGTCCGAAGCTCAGTGGCGTGAACAAAGAAACTGGGGA
AAAGATCCCCATGCCGCTGGGGCACTTCTTCATCGCTATCGATGTTGAAA
GGTTCATTCCGCTTGAATCGTTCAAGTCGAACGTTGGATCGTTCTTGCGT
CAAATGCGAGCCTCTGAAAAAGATCCCAAGGGGCCGGGTCGCATTTACAC
GGCCGGTGAACTTGAACATGAAGGATTTTTAGAATGCGAGAAGGCGGGTG
GAATTCAAATCCCAGAGCCCTTGATGAAGGATATGATGGCGATTCGAGAG
CGATACGCTTCCATACGTCAAAAGTATCCCAAGTTTAGTTTCGAAGAATA
G
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Coding sequence (CDS) from alignment at tig00000081_pilon:316295..317695-

>Ggra6577.t1 ID=Ggra6577.t1|Name=Ggra6577.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000081_pilon:316295..317695- (Gracilaria gracilis GNS1m male)
ATGCCGTCCGTCGTTTCCGCACCGGGTTCACTCCGCACGAAGCTCTCATC
GCTTGCAAAGCGTTTGTCGGGAGATGATGCCATCACGCTCAACCAGTTGT
TGCAGCAATGGGATCAAGGCAAACTCTCGGCCGCAAACGGCGACTTGCCG
TCGGCCGCCACGAAGGCCACGGATTCAGCACCCGTCGTCAAGTATGCCAA
GGTCGAGATGTCCTTTTTGAGGCAGTTCATGAAGGATGCCTTGGTTGCGG
CAGGCGTTCCGGCCGATGAAGCTACTATCGCTGGGGAGGTGTTGGAATGG
GCCGATCTTCACGCAGTTACCACTCATGGTATTGGTCGACTCAAGCCCAT
CTACATTGACCGTATCAACAACGGTATTCTCAAGCCTACTGCTCCGTTTG
AGCTCGTCAACCAGACTGAGACCACTGCCGTTGTTGACGGTCATGGTGGG
CTTGGTCTCTTCATCGGTCCGAAGTGCATGGACATCTGTCTCGAAAAAGC
GAAGAAGCATGGATTGGCCATGGTCGTTGTTAGAAATAGTACTCATTATG
GAGCCGCCGGATACTACGTTGACAAGGCTCAGAAGCATGGTTGCATCGGC
ATCACAGGTACCAATGCGCGCCCCTCAATCGCCCCTACTTTTGGTGTTCA
GCCCATGCTTGGTACCAATCCTTTGACGGTTGGAATGCCTAGTGATGACG
GTTTTCCGTTCGTTTTGGACTGTGCTACCTCTGTGAATCAACGCGGAAAG
ATTGAGAAGTATGAAAGAGAAGGAAAGCCTACCCCGCCTGGTCAGGTTGT
AGATCGTGATGGAAATGTTCGAACTGATACTGCTCAGATTTTGAAGGACT
TACAAACTGGTTATTGCTCTTTGGCGCCGTTGGGGGGTGTCGGTGATGAG
ATGGGAGGCTACAAGGGATATGGATATGCTACAGTTGTAGAACTTTTGTC
TTCTGCACTTCAGGGTGGTCTGAACAGTCCGAAGCTCAGTGGCGTGAACA
AAGAAACTGGGGAAAAGATCCCCATGCCGCTGGGGCACTTCTTCATCGCT
ATCGATGTTGAAAGGTTCATTCCGCTTGAATCGTTCAAGTCGAACGTTGG
ATCGTTCTTGCGTCAAATGCGAGCCTCTGAAAAAGATCCCAAGGGGCCGG
GTCGCATTTACACGGCCGGTGAACTTGAACATGAAGGATTTTTAGAATGC
GAGAAGGCGGGTGGAATTCAAATCCCAGAGCCCTTGATGAAGGATATGAT
GGCGATTCGAGAGCGATACGCTTCCATACGTCAAAAGTATCCCAAGTTTA
GTTTCGAAGAATAG
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