Ggra6575.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6575.t1
Unique NameGgra6575.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:312491..312967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002952661.1
PFAMsRhodanese
Max annot lvl3041|Chlorophyta
Evalue3.61e-17
EggNOG OGsCOG0607@1|root,KOG1530@2759|Eukaryota,37UIG@33090|Viridiplantae,34IXX@3041|Chlorophyta
DescriptionRhodanese Homology Domain
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6575Ggra6575Gracilaria gracilis GNS1m malegenetig00000081_pilon 312491..312967 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6575.t1.start1Ggra6575.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 312491..312493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6575.t1.CDS1Ggra6575.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 312491..312967 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6575.t1.exon1Ggra6575.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 312491..312967 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6575.t1.stop1Ggra6575.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 312965..312967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6575.t1Ggra6575.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 312491..312967 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6575.t1 ID=Ggra6575.t1|Name=Ggra6575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MSSPLIRAAARPAFVVLPASRRLARKSLSPVCPRTLVLHRAVHTMAAKLS
PQALNDKMTQSSTAVYVDVRTPAEFAAGHIPRALNVSLTTHDMKPLPSFV
DDFRAAVGDTTEVIVGCKSGKRSSIAITKLSEAGVQGLMELEGGFESWAA
DSTLPIEQ*
back to top

spliced messenger RNA

>Ggra6575.t1 ID=Ggra6575.t1|Name=Ggra6575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000081_pilon:312491..312967+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCCCGCTGATACGCGCCGCCGCACGCCCCGCCTTCGTCGTACT
CCCCGCTTCTCGACGCCTTGCCCGCAAGTCGCTATCGCCCGTGTGTCCCC
GCACGCTTGTATTGCATCGCGCCGTGCACACCATGGCTGCCAAGCTGTCC
CCCCAGGCGCTCAATGACAAGATGACTCAGTCGTCTACCGCTGTGTACGT
CGACGTGCGCACGCCCGCCGAGTTTGCCGCGGGGCATATTCCGCGCGCCC
TCAACGTGTCACTTACAACTCACGATATGAAGCCACTCCCATCATTCGTC
GACGACTTCCGTGCCGCTGTGGGTGATACCACCGAAGTCATCGTCGGCTG
TAAGAGTGGCAAGAGGAGCTCAATCGCCATCACCAAGCTTAGCGAAGCCG
GCGTTCAGGGGCTAATGGAACTCGAGGGGGGCTTTGAAAGCTGGGCTGCT
GATTCCACCCTTCCAATTGAGCAGTAA
back to top

protein sequence of Ggra6575.t1

>Ggra6575.t1 ID=Ggra6575.t1|Name=Ggra6575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MSSPLIRAAARPAFVVLPASRRLARKSLSPVCPRTLVLHRAVHTMAAKLS
PQALNDKMTQSSTAVYVDVRTPAEFAAGHIPRALNVSLTTHDMKPLPSFV
DDFRAAVGDTTEVIVGCKSGKRSSIAITKLSEAGVQGLMELEGGFESWAA
DSTLPIEQ*
back to top

mRNA from alignment at tig00000081_pilon:312491..312967+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6575.t1 ID=Ggra6575.t1|Name=Ggra6575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000081_pilon:312491..312967+ (Gracilaria gracilis GNS1m male)
ATGAGCTCCCCGCTGATACGCGCCGCCGCACGCCCCGCCTTCGTCGTACT
CCCCGCTTCTCGACGCCTTGCCCGCAAGTCGCTATCGCCCGTGTGTCCCC
GCACGCTTGTATTGCATCGCGCCGTGCACACCATGGCTGCCAAGCTGTCC
CCCCAGGCGCTCAATGACAAGATGACTCAGTCGTCTACCGCTGTGTACGT
CGACGTGCGCACGCCCGCCGAGTTTGCCGCGGGGCATATTCCGCGCGCCC
TCAACGTGTCACTTACAACTCACGATATGAAGCCACTCCCATCATTCGTC
GACGACTTCCGTGCCGCTGTGGGTGATACCACCGAAGTCATCGTCGGCTG
TAAGAGTGGCAAGAGGAGCTCAATCGCCATCACCAAGCTTAGCGAAGCCG
GCGTTCAGGGGCTAATGGAACTCGAGGGGGGCTTTGAAAGCTGGGCTGCT
GATTCCACCCTTCCAATTGAGCAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000081_pilon:312491..312967+

>Ggra6575.t1 ID=Ggra6575.t1|Name=Ggra6575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000081_pilon:312491..312967+ (Gracilaria gracilis GNS1m male)
ATGAGCTCCCCGCTGATACGCGCCGCCGCACGCCCCGCCTTCGTCGTACT
CCCCGCTTCTCGACGCCTTGCCCGCAAGTCGCTATCGCCCGTGTGTCCCC
GCACGCTTGTATTGCATCGCGCCGTGCACACCATGGCTGCCAAGCTGTCC
CCCCAGGCGCTCAATGACAAGATGACTCAGTCGTCTACCGCTGTGTACGT
CGACGTGCGCACGCCCGCCGAGTTTGCCGCGGGGCATATTCCGCGCGCCC
TCAACGTGTCACTTACAACTCACGATATGAAGCCACTCCCATCATTCGTC
GACGACTTCCGTGCCGCTGTGGGTGATACCACCGAAGTCATCGTCGGCTG
TAAGAGTGGCAAGAGGAGCTCAATCGCCATCACCAAGCTTAGCGAAGCCG
GCGTTCAGGGGCTAATGGAACTCGAGGGGGGCTTTGAAAGCTGGGCTGCT
GATTCCACCCTTCCAATTGAGCAGTAA
back to top