Ggra6572.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6572.t1
Unique NameGgra6572.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:306738..308020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK067CT
PFAMsMIP
Max annot lvl2759|Eukaryota
KEGG koko:K09867,ko:K09868,ko:K09873,ko:K09884
KEGG TC1.A.8,1.A.8.10,1.A.8.8
KEGG Pathwayko04970,map04970
Evalue3.85e-35
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota
Descriptionwater channel activity
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6572Ggra6572Gracilaria gracilis GNS1m malegenetig00000081_pilon 306738..308020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1Ggra6572.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 306738..308020 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1.start1Ggra6572.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 306738..306740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1.CDS1Ggra6572.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 306738..307460 +
Ggra6572.t1.CDS2Ggra6572.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 307549..307734 +
Ggra6572.t1.CDS3Ggra6572.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 307856..308020 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1.exon1Ggra6572.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 306738..307460 +
Ggra6572.t1.exon2Ggra6572.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 307549..307734 +
Ggra6572.t1.exon3Ggra6572.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 307856..308020 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1.intron1Ggra6572.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 307461..307548 +
Ggra6572.t1.intron2Ggra6572.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 307735..307855 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6572.t1.stop1Ggra6572.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 308018..308020 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6572.t1 ID=Ggra6572.t1|Name=Ggra6572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MRISGEPTEQTALLEKDSDAEIQTSTLMAEQQMPGLVSRSKPLDARVIFA
EFLCTFLFVYLSVTSTQQSPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLVTDRAPLSRSIVFVFAQLLASISACLLARFLGVTIVFEGVTGGMT
EFVRAFFAEFMPMFIIVMVVFQTAVATEDEGGVGAKIAAMYIGFAVLACA
GTFKGFFNPARAFGPALVTGVLDGQWVYWAGPLIGAVTAAFMSEHLFIAP
ATGRRPKGWLSYLGQKALNAGKSLKSFGIAGLVAYGIMNTVYYGTVFSFM
LLRVGLDSGARGFAKAWMVTWSLSQVTKPLRLLASIALAPFIDRFLSWRK
SRKEREE*
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spliced messenger RNA

>Ggra6572.t1 ID=Ggra6572.t1|Name=Ggra6572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000081_pilon:306738..308020+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGATATCGGGCGAACCAACAGAGCAAACCGCCCTTTTGGAAAAGGA
TTCCGATGCCGAGATACAGACCTCAACGCTCATGGCAGAACAACAAATGC
CCGGTCTCGTTTCGCGATCAAAGCCTCTGGACGCGCGCGTAATCTTCGCG
GAGTTTCTGTGCACCTTTTTGTTTGTTTATCTCAGTGTAACATCAACACA
ACAATCCCCACTTGCAAATACGCTCAACAATGCGTGCATCATCGCAGCAT
TGGCGGCGTCTTTCATGCCTGTGAGTGGCGCACATCTCAACCCAGCTGTC
ACTCTGGCACTACTGGTAACGGATCGTGCACCGCTGTCTCGCTCCATCGT
TTTTGTGTTTGCGCAGCTGCTAGCATCAATCTCAGCCTGCTTACTGGCGC
GTTTTCTGGGCGTCACTATCGTGTTCGAAGGCGTTACAGGAGGAATGACA
GAGTTTGTGCGAGCGTTTTTTGCAGAGTTTATGCCAATGTTCATCATTGT
CATGGTTGTTTTCCAGACTGCTGTTGCGACGGAAGACGAAGGCGGGGTCG
GAGCAAAGATTGCAGCCATGTACATAGGATTTGCCGTTCTTGCTTGCGCA
GGAACTTTTAAGGGATTCTTTAATCCTGCACGGGCGTTCGGGCCGGCGTT
AGTGACTGGCGTTCTCGATGGGCAATGGGTCTACTGGGCCGGTCCTCTGA
TTGGAGCGGTGACGGCTGCGTTTATGAGTGAGCACTTATTTATCGCACCT
GCTACAGGAAGAAGGCCAAAAGGGTGGCTGAGTTATCTTGGACAGAAAGC
TTTGAACGCTGGAAAGAGTTTGAAGAGTTTTGGAATTGCTGGACTGGTGG
CATACGGTATTATGAATACGGTCTACTACGGAACCGTGTTCTCGTTCATG
TTACTGAGGGTTGGATTGGACAGCGGCGCGAGGGGGTTTGCAAAGGCGTG
GATGGTCACATGGTCTTTGTCACAGGTAACGAAGCCGTTGAGGCTTCTTG
CCAGTATTGCGTTGGCGCCATTCATAGATCGTTTCTTAAGCTGGCGTAAG
AGTAGGAAGGAACGTGAAGAATAG
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protein sequence of Ggra6572.t1

>Ggra6572.t1 ID=Ggra6572.t1|Name=Ggra6572.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MRISGEPTEQTALLEKDSDAEIQTSTLMAEQQMPGLVSRSKPLDARVIFA
EFLCTFLFVYLSVTSTQQSPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLVTDRAPLSRSIVFVFAQLLASISACLLARFLGVTIVFEGVTGGMT
EFVRAFFAEFMPMFIIVMVVFQTAVATEDEGGVGAKIAAMYIGFAVLACA
GTFKGFFNPARAFGPALVTGVLDGQWVYWAGPLIGAVTAAFMSEHLFIAP
ATGRRPKGWLSYLGQKALNAGKSLKSFGIAGLVAYGIMNTVYYGTVFSFM
LLRVGLDSGARGFAKAWMVTWSLSQVTKPLRLLASIALAPFIDRFLSWRK
SRKEREE*
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mRNA from alignment at tig00000081_pilon:306738..308020+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6572.t1 ID=Ggra6572.t1|Name=Ggra6572.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1283bp|location=Sequence derived from alignment at tig00000081_pilon:306738..308020+ (Gracilaria gracilis GNS1m male)
ATGAGGATATCGGGCGAACCAACAGAGCAAACCGCCCTTTTGGAAAAGGA
TTCCGATGCCGAGATACAGACCTCAACGCTCATGGCAGAACAACAAATGC
CCGGTCTCGTTTCGCGATCAAAGCCTCTGGACGCGCGCGTAATCTTCGCG
GAGTTTCTGTGCACCTTTTTGTTTGTTTATCTCAGTGTAACATCAACACA
ACAATCCCCACTTGCAAATACGCTCAACAATGCGTGCATCATCGCAGCAT
TGGCGGCGTCTTTCATGCCTGTGAGTGGCGCACATCTCAACCCAGCTGTC
ACTCTGGCACTACTGGTAACGGATCGTGCACCGCTGTCTCGCTCCATCGT
TTTTGTGTTTGCGCAGCTGCTAGCATCAATCTCAGCCTGCTTACTGGCGC
GTTTTCTGGGCGTCACTATCGTGTTCGAAGGCGTTACAGGAGGAATGACA
GAGTTTGTGCGAGCGTTTTTTGCAGAGTTTATGCCAATGTTCATCATTGT
CATGGTTGTTTTCCAGACTGCTGTTGCGACGGAAGACGAAGGCGGGGTCG
GAGCAAAGATTGCAGCCATGTACATAGGATTTGCCGTTCTTGCTTGCGCA
GGAACTTTTAAGGGATTCTTTAATCCTGCACGGGCGTTCGGGCCGGCGTT
AGTGACTGGCGTTCTCGATGGGCAATGGGTCTACTGGGCCGGTCCTCTGA
TTGGAGCGGTGACGGCTGCGTTTGTAAGTAATAGTTTTGTTAATCTGCGC
TTGTTCCGAACTTGCAGTTTGTATCTAACATTGCCTTCTTCATATCTTTT
GTATAACCTAGATGAGTGAGCACTTATTTATCGCACCTGCTACAGGAAGA
AGGCCAAAAGGGTGGCTGAGTTATCTTGGACAGAAAGCTTTGAACGCTGG
AAAGAGTTTGAAGAGTTTTGGAATTGCTGGACTGGTGGCATACGGTATTA
TGAATACGGTCTACTACGGAACCGTGTTCTCGTTCATGTTACTGAGGGTA
TGCTAAGAGTGCGAGGATTCATGTTTATCTTGTTTGTCAAGTGTGAAGGA
GTGTTTTTTGATTGCCTAACATGATTGTACATTATGCTGTATACGAATTC
GAATTTTGATGAGCGTAGGTTGGATTGGACAGCGGCGCGAGGGGGTTTGC
AAAGGCGTGGATGGTCACATGGTCTTTGTCACAGGTAACGAAGCCGTTGA
GGCTTCTTGCCAGTATTGCGTTGGCGCCATTCATAGATCGTTTCTTAAGC
TGGCGTAAGAGTAGGAAGGAACGTGAAGAATAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:306738..308020+

>Ggra6572.t1 ID=Ggra6572.t1|Name=Ggra6572.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000081_pilon:306738..308020+ (Gracilaria gracilis GNS1m male)
ATGAGGATATCGGGCGAACCAACAGAGCAAACCGCCCTTTTGGAAAAGGA
TTCCGATGCCGAGATACAGACCTCAACGCTCATGGCAGAACAACAAATGC
CCGGTCTCGTTTCGCGATCAAAGCCTCTGGACGCGCGCGTAATCTTCGCG
GAGTTTCTGTGCACCTTTTTGTTTGTTTATCTCAGTGTAACATCAACACA
ACAATCCCCACTTGCAAATACGCTCAACAATGCGTGCATCATCGCAGCAT
TGGCGGCGTCTTTCATGCCTGTGAGTGGCGCACATCTCAACCCAGCTGTC
ACTCTGGCACTACTGGTAACGGATCGTGCACCGCTGTCTCGCTCCATCGT
TTTTGTGTTTGCGCAGCTGCTAGCATCAATCTCAGCCTGCTTACTGGCGC
GTTTTCTGGGCGTCACTATCGTGTTCGAAGGCGTTACAGGAGGAATGACA
GAGTTTGTGCGAGCGTTTTTTGCAGAGTTTATGCCAATGTTCATCATTGT
CATGGTTGTTTTCCAGACTGCTGTTGCGACGGAAGACGAAGGCGGGGTCG
GAGCAAAGATTGCAGCCATGTACATAGGATTTGCCGTTCTTGCTTGCGCA
GGAACTTTTAAGGGATTCTTTAATCCTGCACGGGCGTTCGGGCCGGCGTT
AGTGACTGGCGTTCTCGATGGGCAATGGGTCTACTGGGCCGGTCCTCTGA
TTGGAGCGGTGACGGCTGCGTTTATGAGTGAGCACTTATTTATCGCACCT
GCTACAGGAAGAAGGCCAAAAGGGTGGCTGAGTTATCTTGGACAGAAAGC
TTTGAACGCTGGAAAGAGTTTGAAGAGTTTTGGAATTGCTGGACTGGTGG
CATACGGTATTATGAATACGGTCTACTACGGAACCGTGTTCTCGTTCATG
TTACTGAGGGTTGGATTGGACAGCGGCGCGAGGGGGTTTGCAAAGGCGTG
GATGGTCACATGGTCTTTGTCACAGGTAACGAAGCCGTTGAGGCTTCTTG
CCAGTATTGCGTTGGCGCCATTCATAGATCGTTTCTTAAGCTGGCGTAAG
AGTAGGAAGGAACGTGAAGAATAG
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