Ggra6570.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6570.t1
Unique NameGgra6570.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:302403..302882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002166786.1
Preferred nameRPL21
PFAMsRibosomal_L21e
Max annot lvl33208|Metazoa
KEGG koko:K02889
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue2.35e-49
EggNOG OGsCOG2139@1|root,KOG1732@2759|Eukaryota,39YIF@33154|Opisthokonta,3BEIQ@33208|Metazoa
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6570Ggra6570Gracilaria gracilis GNS1m malegenetig00000081_pilon 302403..302882 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6570.t1.start1Ggra6570.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 302403..302405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6570.t1.CDS1Ggra6570.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 302403..302882 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6570.t1.exon1Ggra6570.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 302403..302882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6570.t1.stop1Ggra6570.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 302880..302882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6570.t1Ggra6570.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 302403..302882 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6570.t1 ID=Ggra6570.t1|Name=Ggra6570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MVRSNGKRANTRHLFKKTFRKKGPEHLSTYLQTFRVGDFVDIHINPAVMK
GMPHKFYQGRTGRVFNVSRTAVGVQVSKQVGNHILMKRFHIRTEHVQKSR
CNDDFRQRAQKRELEARDAHKHGEKYVIQKRTPVLPTKAHVVDVSTMELV
EPIPYEFVV*
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spliced messenger RNA

>Ggra6570.t1 ID=Ggra6570.t1|Name=Ggra6570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000081_pilon:302403..302882+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCGTTCCAACGGAAAGCGCGCCAACACGCGCCATTTGTTCAAGAA
GACCTTCAGAAAGAAGGGGCCGGAACACCTGTCCACCTATCTGCAGACCT
TCAGAGTGGGAGACTTTGTGGACATTCACATCAACCCCGCCGTCATGAAG
GGCATGCCACACAAGTTTTATCAGGGTCGTACGGGCCGTGTCTTCAATGT
GTCTCGCACCGCCGTGGGCGTCCAGGTCTCCAAGCAGGTGGGCAATCATA
TTTTGATGAAGCGTTTCCACATTCGTACCGAGCATGTGCAGAAGAGTCGT
TGTAACGACGATTTCAGGCAACGTGCTCAAAAGCGCGAGCTGGAAGCTAG
GGACGCCCACAAGCATGGTGAAAAGTATGTCATTCAGAAGAGAACGCCCG
TGCTTCCTACAAAAGCCCATGTTGTCGATGTCTCCACCATGGAACTCGTC
GAACCCATCCCATACGAGTTTGTCGTGTAA
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protein sequence of Ggra6570.t1

>Ggra6570.t1 ID=Ggra6570.t1|Name=Ggra6570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MVRSNGKRANTRHLFKKTFRKKGPEHLSTYLQTFRVGDFVDIHINPAVMK
GMPHKFYQGRTGRVFNVSRTAVGVQVSKQVGNHILMKRFHIRTEHVQKSR
CNDDFRQRAQKRELEARDAHKHGEKYVIQKRTPVLPTKAHVVDVSTMELV
EPIPYEFVV*
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mRNA from alignment at tig00000081_pilon:302403..302882+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6570.t1 ID=Ggra6570.t1|Name=Ggra6570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000081_pilon:302403..302882+ (Gracilaria gracilis GNS1m male)
ATGGTTCGTTCCAACGGAAAGCGCGCCAACACGCGCCATTTGTTCAAGAA
GACCTTCAGAAAGAAGGGGCCGGAACACCTGTCCACCTATCTGCAGACCT
TCAGAGTGGGAGACTTTGTGGACATTCACATCAACCCCGCCGTCATGAAG
GGCATGCCACACAAGTTTTATCAGGGTCGTACGGGCCGTGTCTTCAATGT
GTCTCGCACCGCCGTGGGCGTCCAGGTCTCCAAGCAGGTGGGCAATCATA
TTTTGATGAAGCGTTTCCACATTCGTACCGAGCATGTGCAGAAGAGTCGT
TGTAACGACGATTTCAGGCAACGTGCTCAAAAGCGCGAGCTGGAAGCTAG
GGACGCCCACAAGCATGGTGAAAAGTATGTCATTCAGAAGAGAACGCCCG
TGCTTCCTACAAAAGCCCATGTTGTCGATGTCTCCACCATGGAACTCGTC
GAACCCATCCCATACGAGTTTGTCGTGTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:302403..302882+

>Ggra6570.t1 ID=Ggra6570.t1|Name=Ggra6570.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000081_pilon:302403..302882+ (Gracilaria gracilis GNS1m male)
ATGGTTCGTTCCAACGGAAAGCGCGCCAACACGCGCCATTTGTTCAAGAA
GACCTTCAGAAAGAAGGGGCCGGAACACCTGTCCACCTATCTGCAGACCT
TCAGAGTGGGAGACTTTGTGGACATTCACATCAACCCCGCCGTCATGAAG
GGCATGCCACACAAGTTTTATCAGGGTCGTACGGGCCGTGTCTTCAATGT
GTCTCGCACCGCCGTGGGCGTCCAGGTCTCCAAGCAGGTGGGCAATCATA
TTTTGATGAAGCGTTTCCACATTCGTACCGAGCATGTGCAGAAGAGTCGT
TGTAACGACGATTTCAGGCAACGTGCTCAAAAGCGCGAGCTGGAAGCTAG
GGACGCCCACAAGCATGGTGAAAAGTATGTCATTCAGAAGAGAACGCCCG
TGCTTCCTACAAAAGCCCATGTTGTCGATGTCTCCACCATGGAACTCGTC
GAACCCATCCCATACGAGTTTGTCGTGTAA
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