Ggra6568.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6568.t1
Unique Name	Ggra6568.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:294470..296203 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706236.1
PFAMs	RPE65,tRNA-synt_2,tRNA_anti-codon
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01876,ko:K22503
KEGG Reaction	R05577
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	6.2e-153
EggNOG OGs	COG0017@1\|root,COG3670@1\|root,KOG0556@2759\|Eukaryota,KOG1285@2759\|Eukaryota
EC	6.1.1.12
Description	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
COG category	Q
BiGG Reaction	iRC1080.CRv4_Au5_s6_g12982_t1
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6568	Ggra6568	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 294470..296203 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6568.t1.start1	Ggra6568.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 294470..294472 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6568.t1.CDS1	Ggra6568.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 294470..296203 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6568.t1.exon1	Ggra6568.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 294470..296203 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6568.t1.stop1	Ggra6568.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 296201..296203 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6568.t1	Ggra6568.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 294470..296203 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:294470..296203+
coding sequence from alignment at tig00000081_pilon:294470..296203+

mRNA sequence

>Ggra6568.t1 ID=Ggra6568.t1|Name=Ggra6568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=578bp
MEQAAKPNEGPVDTGNAPVQKSRADMSEDEKKRLKEAKKAAKEAAKREKA
EKKAAAAKAAAEALAASQALVTGIEFLSIGEQPESLYGSYRVIQSKCPPT
GSGRSFSPLSVLSKCPFGDEVWVRARVHKAVFTSQVGFVTLRKGLYTVQA
VLEGKDLLKWAKKAVTHETIVDIHALIRQPEGGRVEKCSVSNVELAVRRI
YIVSRSEETLPLSVEDAARPVEDDEPAPAEDAQMDTTQAARTRPRVTRDT
RLDARVVDLRAPPHASLMRVQSGVCQLFREFLYSNAFMEIHSPKLIAGAS
EGGSSVFHLPYFDRKACLAQSPQLYKQMVICSDFNRVFEIGPVFRAEKSH
THRHLCEFTGLDLEMEIYEHYNEILDVLDGLFTAIFDGLEKRYGTELAVV
RSKWNVPNFKYYTGRPNLRLKWPQAIEMLRGAGVEIGEFEDINTEKEKLL
GKLVKEKYDTDFFMLTHFPSVIRPFYTMVDPVDSRYSNSYDLFMRGEEIV
SGAQRIHDVELLKTRAVAMLGEDGVSSIKDYVNAFRYGAPPHGGAGIGLE
RVVMLYLGVENVRECSLFPRDPERLTP*

spliced messenger RNA

>Ggra6568.t1 ID=Ggra6568.t1|Name=Ggra6568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000081_pilon:294470..296203+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAGCCGCAAAGCCGAACGAAGGACCCGTCGATACGGGCAATGC
GCCGGTACAGAAGAGTCGTGCTGACATGAGTGAGGACGAGAAGAAACGGC
TCAAGGAGGCGAAGAAAGCCGCCAAGGAAGCCGCCAAGCGAGAAAAGGCT
GAGAAGAAGGCTGCCGCTGCGAAGGCCGCTGCGGAAGCTCTTGCCGCGTC
GCAGGCGCTTGTCACGGGAATTGAGTTCCTGTCCATTGGCGAGCAGCCCG
AGTCTCTATATGGCTCGTACCGCGTTATACAGAGCAAGTGCCCGCCCACT
GGTAGTGGTCGCTCTTTTTCGCCGCTGTCTGTGCTTTCGAAATGCCCGTT
TGGCGATGAGGTTTGGGTCAGGGCTCGCGTTCACAAAGCTGTGTTTACGT
CACAGGTTGGGTTTGTTACCTTGAGGAAGGGCTTGTATACCGTTCAGGCC
GTGTTGGAAGGGAAGGACCTTCTCAAATGGGCCAAGAAGGCTGTCACTCA
CGAAACCATTGTTGATATTCATGCGCTCATCCGCCAGCCGGAAGGCGGCC
GAGTTGAGAAATGCTCCGTTTCAAATGTTGAATTGGCTGTGCGCAGGATC
TACATCGTCTCGCGTTCGGAGGAGACTCTACCGCTTTCGGTCGAGGATGC
GGCCCGTCCTGTTGAGGATGACGAGCCTGCGCCAGCGGAAGACGCTCAAA
TGGATACCACGCAAGCCGCGCGTACCAGACCACGAGTCACCCGTGATACC
CGACTGGATGCACGAGTCGTTGATCTCAGAGCACCTCCGCACGCTAGTTT
GATGCGTGTGCAAAGCGGTGTTTGTCAACTGTTTCGCGAGTTTCTGTACT
CCAATGCATTCATGGAGATCCATTCCCCGAAGCTGATTGCTGGCGCTTCA
GAAGGAGGCTCTTCAGTGTTTCATCTGCCTTATTTTGACAGAAAGGCTTG
CCTTGCACAAAGTCCACAGCTTTATAAACAGATGGTTATCTGCAGTGACT
TTAACCGTGTGTTTGAGATAGGACCAGTGTTCCGTGCAGAGAAGAGTCAT
ACTCATCGTCACTTGTGCGAATTTACGGGTCTGGATCTTGAAATGGAAAT
ATATGAACATTATAATGAGATCCTGGATGTTCTCGACGGTTTGTTCACTG
CCATTTTCGATGGACTTGAGAAGCGGTACGGGACTGAGCTTGCTGTTGTG
CGATCCAAATGGAATGTGCCCAACTTCAAGTACTACACCGGGCGCCCCAA
CTTGCGTTTGAAGTGGCCACAGGCGATTGAGATGCTGCGAGGAGCGGGAG
TCGAGATTGGTGAGTTTGAGGATATCAACACGGAGAAGGAAAAATTGTTG
GGTAAGCTGGTCAAGGAGAAGTACGACACGGACTTTTTCATGCTCACTCA
TTTCCCCTCGGTCATCAGACCATTTTATACAATGGTGGACCCCGTGGATA
GCCGCTATTCAAACTCGTATGACTTGTTCATGCGAGGGGAAGAAATCGTT
TCTGGAGCGCAGCGAATTCACGACGTTGAGCTTCTCAAGACGCGTGCGGT
TGCCATGTTGGGTGAAGACGGTGTATCGTCTATAAAGGACTACGTGAACG
CGTTCCGGTATGGAGCTCCTCCTCATGGTGGCGCTGGAATCGGGCTGGAG
CGAGTCGTGATGTTGTACCTTGGGGTGGAGAACGTGCGAGAGTGTTCGCT
GTTCCCCCGTGATCCAGAGCGTCTAACTCCCTAA

protein sequence of Ggra6568.t1

>Ggra6568.t1 ID=Ggra6568.t1|Name=Ggra6568.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=578bp
MEQAAKPNEGPVDTGNAPVQKSRADMSEDEKKRLKEAKKAAKEAAKREKA
EKKAAAAKAAAEALAASQALVTGIEFLSIGEQPESLYGSYRVIQSKCPPT
GSGRSFSPLSVLSKCPFGDEVWVRARVHKAVFTSQVGFVTLRKGLYTVQA
VLEGKDLLKWAKKAVTHETIVDIHALIRQPEGGRVEKCSVSNVELAVRRI
YIVSRSEETLPLSVEDAARPVEDDEPAPAEDAQMDTTQAARTRPRVTRDT
RLDARVVDLRAPPHASLMRVQSGVCQLFREFLYSNAFMEIHSPKLIAGAS
EGGSSVFHLPYFDRKACLAQSPQLYKQMVICSDFNRVFEIGPVFRAEKSH
THRHLCEFTGLDLEMEIYEHYNEILDVLDGLFTAIFDGLEKRYGTELAVV
RSKWNVPNFKYYTGRPNLRLKWPQAIEMLRGAGVEIGEFEDINTEKEKLL
GKLVKEKYDTDFFMLTHFPSVIRPFYTMVDPVDSRYSNSYDLFMRGEEIV
SGAQRIHDVELLKTRAVAMLGEDGVSSIKDYVNAFRYGAPPHGGAGIGLE
RVVMLYLGVENVRECSLFPRDPERLTP*

mRNA from alignment at tig00000081_pilon:294470..296203+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6568.t1 ID=Ggra6568.t1|Name=Ggra6568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00000081_pilon:294470..296203+ (Gracilaria gracilis GNS1m male)
ATGGAGCAAGCCGCAAAGCCGAACGAAGGACCCGTCGATACGGGCAATGC
GCCGGTACAGAAGAGTCGTGCTGACATGAGTGAGGACGAGAAGAAACGGC
TCAAGGAGGCGAAGAAAGCCGCCAAGGAAGCCGCCAAGCGAGAAAAGGCT
GAGAAGAAGGCTGCCGCTGCGAAGGCCGCTGCGGAAGCTCTTGCCGCGTC
GCAGGCGCTTGTCACGGGAATTGAGTTCCTGTCCATTGGCGAGCAGCCCG
AGTCTCTATATGGCTCGTACCGCGTTATACAGAGCAAGTGCCCGCCCACT
GGTAGTGGTCGCTCTTTTTCGCCGCTGTCTGTGCTTTCGAAATGCCCGTT
TGGCGATGAGGTTTGGGTCAGGGCTCGCGTTCACAAAGCTGTGTTTACGT
CACAGGTTGGGTTTGTTACCTTGAGGAAGGGCTTGTATACCGTTCAGGCC
GTGTTGGAAGGGAAGGACCTTCTCAAATGGGCCAAGAAGGCTGTCACTCA
CGAAACCATTGTTGATATTCATGCGCTCATCCGCCAGCCGGAAGGCGGCC
GAGTTGAGAAATGCTCCGTTTCAAATGTTGAATTGGCTGTGCGCAGGATC
TACATCGTCTCGCGTTCGGAGGAGACTCTACCGCTTTCGGTCGAGGATGC
GGCCCGTCCTGTTGAGGATGACGAGCCTGCGCCAGCGGAAGACGCTCAAA
TGGATACCACGCAAGCCGCGCGTACCAGACCACGAGTCACCCGTGATACC
CGACTGGATGCACGAGTCGTTGATCTCAGAGCACCTCCGCACGCTAGTTT
GATGCGTGTGCAAAGCGGTGTTTGTCAACTGTTTCGCGAGTTTCTGTACT
CCAATGCATTCATGGAGATCCATTCCCCGAAGCTGATTGCTGGCGCTTCA
GAAGGAGGCTCTTCAGTGTTTCATCTGCCTTATTTTGACAGAAAGGCTTG
CCTTGCACAAAGTCCACAGCTTTATAAACAGATGGTTATCTGCAGTGACT
TTAACCGTGTGTTTGAGATAGGACCAGTGTTCCGTGCAGAGAAGAGTCAT
ACTCATCGTCACTTGTGCGAATTTACGGGTCTGGATCTTGAAATGGAAAT
ATATGAACATTATAATGAGATCCTGGATGTTCTCGACGGTTTGTTCACTG
CCATTTTCGATGGACTTGAGAAGCGGTACGGGACTGAGCTTGCTGTTGTG
CGATCCAAATGGAATGTGCCCAACTTCAAGTACTACACCGGGCGCCCCAA
CTTGCGTTTGAAGTGGCCACAGGCGATTGAGATGCTGCGAGGAGCGGGAG
TCGAGATTGGTGAGTTTGAGGATATCAACACGGAGAAGGAAAAATTGTTG
GGTAAGCTGGTCAAGGAGAAGTACGACACGGACTTTTTCATGCTCACTCA
TTTCCCCTCGGTCATCAGACCATTTTATACAATGGTGGACCCCGTGGATA
GCCGCTATTCAAACTCGTATGACTTGTTCATGCGAGGGGAAGAAATCGTT
TCTGGAGCGCAGCGAATTCACGACGTTGAGCTTCTCAAGACGCGTGCGGT
TGCCATGTTGGGTGAAGACGGTGTATCGTCTATAAAGGACTACGTGAACG
CGTTCCGGTATGGAGCTCCTCCTCATGGTGGCGCTGGAATCGGGCTGGAG
CGAGTCGTGATGTTGTACCTTGGGGTGGAGAACGTGCGAGAGTGTTCGCT
GTTCCCCCGTGATCCAGAGCGTCTAACTCCCTAA

Coding sequence (CDS) from alignment at tig00000081_pilon:294470..296203+

>Ggra6568.t1 ID=Ggra6568.t1|Name=Ggra6568.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00000081_pilon:294470..296203+ (Gracilaria gracilis GNS1m male)
ATGGAGCAAGCCGCAAAGCCGAACGAAGGACCCGTCGATACGGGCAATGC
GCCGGTACAGAAGAGTCGTGCTGACATGAGTGAGGACGAGAAGAAACGGC
TCAAGGAGGCGAAGAAAGCCGCCAAGGAAGCCGCCAAGCGAGAAAAGGCT
GAGAAGAAGGCTGCCGCTGCGAAGGCCGCTGCGGAAGCTCTTGCCGCGTC
GCAGGCGCTTGTCACGGGAATTGAGTTCCTGTCCATTGGCGAGCAGCCCG
AGTCTCTATATGGCTCGTACCGCGTTATACAGAGCAAGTGCCCGCCCACT
GGTAGTGGTCGCTCTTTTTCGCCGCTGTCTGTGCTTTCGAAATGCCCGTT
TGGCGATGAGGTTTGGGTCAGGGCTCGCGTTCACAAAGCTGTGTTTACGT
CACAGGTTGGGTTTGTTACCTTGAGGAAGGGCTTGTATACCGTTCAGGCC
GTGTTGGAAGGGAAGGACCTTCTCAAATGGGCCAAGAAGGCTGTCACTCA
CGAAACCATTGTTGATATTCATGCGCTCATCCGCCAGCCGGAAGGCGGCC
GAGTTGAGAAATGCTCCGTTTCAAATGTTGAATTGGCTGTGCGCAGGATC
TACATCGTCTCGCGTTCGGAGGAGACTCTACCGCTTTCGGTCGAGGATGC
GGCCCGTCCTGTTGAGGATGACGAGCCTGCGCCAGCGGAAGACGCTCAAA
TGGATACCACGCAAGCCGCGCGTACCAGACCACGAGTCACCCGTGATACC
CGACTGGATGCACGAGTCGTTGATCTCAGAGCACCTCCGCACGCTAGTTT
GATGCGTGTGCAAAGCGGTGTTTGTCAACTGTTTCGCGAGTTTCTGTACT
CCAATGCATTCATGGAGATCCATTCCCCGAAGCTGATTGCTGGCGCTTCA
GAAGGAGGCTCTTCAGTGTTTCATCTGCCTTATTTTGACAGAAAGGCTTG
CCTTGCACAAAGTCCACAGCTTTATAAACAGATGGTTATCTGCAGTGACT
TTAACCGTGTGTTTGAGATAGGACCAGTGTTCCGTGCAGAGAAGAGTCAT
ACTCATCGTCACTTGTGCGAATTTACGGGTCTGGATCTTGAAATGGAAAT
ATATGAACATTATAATGAGATCCTGGATGTTCTCGACGGTTTGTTCACTG
CCATTTTCGATGGACTTGAGAAGCGGTACGGGACTGAGCTTGCTGTTGTG
CGATCCAAATGGAATGTGCCCAACTTCAAGTACTACACCGGGCGCCCCAA
CTTGCGTTTGAAGTGGCCACAGGCGATTGAGATGCTGCGAGGAGCGGGAG
TCGAGATTGGTGAGTTTGAGGATATCAACACGGAGAAGGAAAAATTGTTG
GGTAAGCTGGTCAAGGAGAAGTACGACACGGACTTTTTCATGCTCACTCA
TTTCCCCTCGGTCATCAGACCATTTTATACAATGGTGGACCCCGTGGATA
GCCGCTATTCAAACTCGTATGACTTGTTCATGCGAGGGGAAGAAATCGTT
TCTGGAGCGCAGCGAATTCACGACGTTGAGCTTCTCAAGACGCGTGCGGT
TGCCATGTTGGGTGAAGACGGTGTATCGTCTATAAAGGACTACGTGAACG
CGTTCCGGTATGGAGCTCCTCCTCATGGTGGCGCTGGAATCGGGCTGGAG
CGAGTCGTGATGTTGTACCTTGGGGTGGAGAACGTGCGAGAGTGTTCGCT
GTTCCCCCGTGATCCAGAGCGTCTAACTCCCTAA