Ggra6567.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6567.t1
Unique NameGgra6567.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:292530..293915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO45438
PFAMsHis_Phos_2
Max annot lvl33208|Metazoa
KEGG rclassRC00017
KEGG koko:K14410,ko:K19283
KEGG ReactionR00548,R11527
KEGG Pathwayko00740,ko01100,ko04142,map00740,map01100,map04142
Evalue2.32e-19
EggNOG OGsKOG3720@1|root,KOG3720@2759|Eukaryota,38FTJ@33154|Opisthokonta,3B97H@33208|Metazoa
EC3.1.3.2,3.1.3.5
Descriptionacid phosphatase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6567Ggra6567Gracilaria gracilis GNS1m malegenetig00000081_pilon 292530..293915 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6567.t1.stop1Ggra6567.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 292530..292532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6567.t1.CDS1Ggra6567.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 292530..293915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6567.t1.exon1Ggra6567.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 292530..293915 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6567.t1.start1Ggra6567.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 293913..293915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6567.t1Ggra6567.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 292530..293915 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6567.t1 ID=Ggra6567.t1|Name=Ggra6567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MRLVLLVLALAAAAGLVSARIIQVQVIHRHGARNPLKKNPTDPREETRTG
SIYRAGVDQLTRLGAYIRSQYIQSDKPIKGIEPVYEEPSYVGSFSSNFER
TQISARSFLRGLYPDDSHRIPTLVFNSSRFDWIIRGYAICPSLAVRFDDF
INSSEFEARNKKDGAFVATLAKKLGHPADEQNLQHVFNVYDQYNIINNGY
DVSDRFKNIAKLSDSDATRLRQVADWYETTKFSFATHHIHVAAGLLGTIQ
HHANTIDSTSSEKTYRIVEYSAHYPTLLTLWASIRANTNSQPTPPADKLP
DFGAALIIEVHEEGSSRGNRVLHLKWYSGGDGAPRAEPIAFGTPGCTDVN
KGCSLSQFERSTALETMGRKKFCMDCESDLCSLGSRSSASAVTSSTNLAA
VCSVGKRITSGAIGACVGLTFGLLGAVLYIVLSGKKKRRDLESHARVANM
EQSTFQGDVHA*
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spliced messenger RNA

>Ggra6567.t1 ID=Ggra6567.t1|Name=Ggra6567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000081_pilon:292530..293915- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGTCTTGCTTGTGCTCGCGCTTGCGGCCGCCGCTGGCTTGGT
CAGCGCGCGCATTATTCAGGTGCAGGTTATTCATCGCCATGGCGCTCGCA
ACCCGCTCAAGAAGAATCCTACTGACCCCCGTGAGGAGACTCGTACCGGT
AGTATTTATCGCGCTGGAGTGGACCAGCTCACCAGGCTTGGAGCCTACAT
TCGAAGCCAGTATATACAATCGGACAAGCCCATCAAGGGCATCGAGCCTG
TGTACGAGGAACCAAGCTACGTTGGTTCGTTCAGTTCAAACTTTGAGCGA
ACGCAAATCAGCGCCCGCTCTTTTCTGCGCGGCTTGTATCCAGATGACAG
TCATCGCATCCCCACCCTCGTCTTCAACAGCTCCCGATTCGATTGGATCA
TTCGCGGCTACGCCATATGCCCCAGCCTCGCTGTGCGCTTCGATGACTTT
ATAAACAGCTCCGAGTTTGAGGCGCGGAACAAGAAGGATGGAGCCTTCGT
TGCCACCTTGGCAAAAAAGCTCGGTCACCCCGCGGATGAACAAAACTTGC
AGCACGTCTTCAACGTATACGATCAGTATAACATCATTAACAATGGTTAC
GACGTTAGTGACCGCTTCAAAAACATTGCCAAGCTCTCTGATTCTGACGC
CACCCGTCTTAGACAAGTTGCAGACTGGTATGAAACCACAAAGTTCTCCT
TCGCCACTCACCACATTCACGTTGCAGCCGGTCTTCTGGGCACCATTCAG
CATCACGCAAACACCATAGATTCCACATCCAGCGAGAAAACCTATCGCAT
CGTCGAGTACTCTGCTCACTACCCCACTCTTCTTACCTTATGGGCATCCA
TTCGTGCTAATACCAATAGCCAACCAACGCCACCCGCAGATAAGCTACCA
GATTTTGGCGCCGCTCTCATCATTGAGGTTCACGAAGAAGGGTCCTCCAG
AGGCAATCGCGTCCTCCACCTCAAATGGTATTCCGGCGGTGATGGTGCTC
CCCGCGCCGAACCCATCGCATTTGGGACCCCTGGCTGTACAGACGTCAAC
AAGGGCTGTTCCCTGAGCCAGTTTGAACGAAGCACTGCTCTGGAAACCAT
GGGTCGAAAGAAGTTCTGCATGGATTGCGAATCGGATCTGTGCAGTCTTG
GCTCTCGGTCCTCTGCTTCAGCAGTGACTTCTTCGACCAATTTGGCCGCC
GTCTGTTCGGTCGGAAAACGAATCACATCAGGTGCTATAGGGGCTTGTGT
TGGACTTACGTTTGGCTTGTTGGGAGCTGTGCTCTATATTGTTCTAAGCG
GCAAGAAGAAGAGACGCGATCTGGAGTCGCATGCGAGAGTAGCCAACATG
GAACAATCTACTTTTCAAGGCGACGTACATGCCTGA
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protein sequence of Ggra6567.t1

>Ggra6567.t1 ID=Ggra6567.t1|Name=Ggra6567.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MRLVLLVLALAAAAGLVSARIIQVQVIHRHGARNPLKKNPTDPREETRTG
SIYRAGVDQLTRLGAYIRSQYIQSDKPIKGIEPVYEEPSYVGSFSSNFER
TQISARSFLRGLYPDDSHRIPTLVFNSSRFDWIIRGYAICPSLAVRFDDF
INSSEFEARNKKDGAFVATLAKKLGHPADEQNLQHVFNVYDQYNIINNGY
DVSDRFKNIAKLSDSDATRLRQVADWYETTKFSFATHHIHVAAGLLGTIQ
HHANTIDSTSSEKTYRIVEYSAHYPTLLTLWASIRANTNSQPTPPADKLP
DFGAALIIEVHEEGSSRGNRVLHLKWYSGGDGAPRAEPIAFGTPGCTDVN
KGCSLSQFERSTALETMGRKKFCMDCESDLCSLGSRSSASAVTSSTNLAA
VCSVGKRITSGAIGACVGLTFGLLGAVLYIVLSGKKKRRDLESHARVANM
EQSTFQGDVHA*
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mRNA from alignment at tig00000081_pilon:292530..293915-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6567.t1 ID=Ggra6567.t1|Name=Ggra6567.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000081_pilon:292530..293915- (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTCTTGCTTGTGCTCGCGCTTGCGGCCGCCGCTGGCTTGGT
CAGCGCGCGCATTATTCAGGTGCAGGTTATTCATCGCCATGGCGCTCGCA
ACCCGCTCAAGAAGAATCCTACTGACCCCCGTGAGGAGACTCGTACCGGT
AGTATTTATCGCGCTGGAGTGGACCAGCTCACCAGGCTTGGAGCCTACAT
TCGAAGCCAGTATATACAATCGGACAAGCCCATCAAGGGCATCGAGCCTG
TGTACGAGGAACCAAGCTACGTTGGTTCGTTCAGTTCAAACTTTGAGCGA
ACGCAAATCAGCGCCCGCTCTTTTCTGCGCGGCTTGTATCCAGATGACAG
TCATCGCATCCCCACCCTCGTCTTCAACAGCTCCCGATTCGATTGGATCA
TTCGCGGCTACGCCATATGCCCCAGCCTCGCTGTGCGCTTCGATGACTTT
ATAAACAGCTCCGAGTTTGAGGCGCGGAACAAGAAGGATGGAGCCTTCGT
TGCCACCTTGGCAAAAAAGCTCGGTCACCCCGCGGATGAACAAAACTTGC
AGCACGTCTTCAACGTATACGATCAGTATAACATCATTAACAATGGTTAC
GACGTTAGTGACCGCTTCAAAAACATTGCCAAGCTCTCTGATTCTGACGC
CACCCGTCTTAGACAAGTTGCAGACTGGTATGAAACCACAAAGTTCTCCT
TCGCCACTCACCACATTCACGTTGCAGCCGGTCTTCTGGGCACCATTCAG
CATCACGCAAACACCATAGATTCCACATCCAGCGAGAAAACCTATCGCAT
CGTCGAGTACTCTGCTCACTACCCCACTCTTCTTACCTTATGGGCATCCA
TTCGTGCTAATACCAATAGCCAACCAACGCCACCCGCAGATAAGCTACCA
GATTTTGGCGCCGCTCTCATCATTGAGGTTCACGAAGAAGGGTCCTCCAG
AGGCAATCGCGTCCTCCACCTCAAATGGTATTCCGGCGGTGATGGTGCTC
CCCGCGCCGAACCCATCGCATTTGGGACCCCTGGCTGTACAGACGTCAAC
AAGGGCTGTTCCCTGAGCCAGTTTGAACGAAGCACTGCTCTGGAAACCAT
GGGTCGAAAGAAGTTCTGCATGGATTGCGAATCGGATCTGTGCAGTCTTG
GCTCTCGGTCCTCTGCTTCAGCAGTGACTTCTTCGACCAATTTGGCCGCC
GTCTGTTCGGTCGGAAAACGAATCACATCAGGTGCTATAGGGGCTTGTGT
TGGACTTACGTTTGGCTTGTTGGGAGCTGTGCTCTATATTGTTCTAAGCG
GCAAGAAGAAGAGACGCGATCTGGAGTCGCATGCGAGAGTAGCCAACATG
GAACAATCTACTTTTCAAGGCGACGTACATGCCTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:292530..293915-

>Ggra6567.t1 ID=Ggra6567.t1|Name=Ggra6567.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000081_pilon:292530..293915- (Gracilaria gracilis GNS1m male)
ATGCGTCTCGTCTTGCTTGTGCTCGCGCTTGCGGCCGCCGCTGGCTTGGT
CAGCGCGCGCATTATTCAGGTGCAGGTTATTCATCGCCATGGCGCTCGCA
ACCCGCTCAAGAAGAATCCTACTGACCCCCGTGAGGAGACTCGTACCGGT
AGTATTTATCGCGCTGGAGTGGACCAGCTCACCAGGCTTGGAGCCTACAT
TCGAAGCCAGTATATACAATCGGACAAGCCCATCAAGGGCATCGAGCCTG
TGTACGAGGAACCAAGCTACGTTGGTTCGTTCAGTTCAAACTTTGAGCGA
ACGCAAATCAGCGCCCGCTCTTTTCTGCGCGGCTTGTATCCAGATGACAG
TCATCGCATCCCCACCCTCGTCTTCAACAGCTCCCGATTCGATTGGATCA
TTCGCGGCTACGCCATATGCCCCAGCCTCGCTGTGCGCTTCGATGACTTT
ATAAACAGCTCCGAGTTTGAGGCGCGGAACAAGAAGGATGGAGCCTTCGT
TGCCACCTTGGCAAAAAAGCTCGGTCACCCCGCGGATGAACAAAACTTGC
AGCACGTCTTCAACGTATACGATCAGTATAACATCATTAACAATGGTTAC
GACGTTAGTGACCGCTTCAAAAACATTGCCAAGCTCTCTGATTCTGACGC
CACCCGTCTTAGACAAGTTGCAGACTGGTATGAAACCACAAAGTTCTCCT
TCGCCACTCACCACATTCACGTTGCAGCCGGTCTTCTGGGCACCATTCAG
CATCACGCAAACACCATAGATTCCACATCCAGCGAGAAAACCTATCGCAT
CGTCGAGTACTCTGCTCACTACCCCACTCTTCTTACCTTATGGGCATCCA
TTCGTGCTAATACCAATAGCCAACCAACGCCACCCGCAGATAAGCTACCA
GATTTTGGCGCCGCTCTCATCATTGAGGTTCACGAAGAAGGGTCCTCCAG
AGGCAATCGCGTCCTCCACCTCAAATGGTATTCCGGCGGTGATGGTGCTC
CCCGCGCCGAACCCATCGCATTTGGGACCCCTGGCTGTACAGACGTCAAC
AAGGGCTGTTCCCTGAGCCAGTTTGAACGAAGCACTGCTCTGGAAACCAT
GGGTCGAAAGAAGTTCTGCATGGATTGCGAATCGGATCTGTGCAGTCTTG
GCTCTCGGTCCTCTGCTTCAGCAGTGACTTCTTCGACCAATTTGGCCGCC
GTCTGTTCGGTCGGAAAACGAATCACATCAGGTGCTATAGGGGCTTGTGT
TGGACTTACGTTTGGCTTGTTGGGAGCTGTGCTCTATATTGTTCTAAGCG
GCAAGAAGAAGAGACGCGATCTGGAGTCGCATGCGAGAGTAGCCAACATG
GAACAATCTACTTTTCAAGGCGACGTACATGCCTGA
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