Ggra6565.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6565.t1
Unique NameGgra6565.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:284989..285432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog714083.JH370377_gene839
Preferred namehsp18
PFAMsHSP20
Max annot lvl201174|Actinobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.53e-11
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2IHVJ@201174|Actinobacteria,4FP48@85023|Microbacteriaceae
DescriptionHsp20/alpha crystallin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6565Ggra6565Gracilaria gracilis GNS1m malegenetig00000081_pilon 284989..285432 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6565.t1.start1Ggra6565.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 284989..284991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6565.t1.CDS1Ggra6565.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 284989..285432 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6565.t1.exon1Ggra6565.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 284989..285432 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6565.t1.stop1Ggra6565.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 285430..285432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6565.t1Ggra6565.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 284989..285432 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6565.t1 ID=Ggra6565.t1|Name=Ggra6565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MVMYITPFDIPSFTFFEMDPCVQRKAKPTATEMSPAAHTHQPNDKQTVLQ
VDLPGVQKEQVSVEVNGNKLTVTGKRNRFNNDSADKADKQADDDAAEERT
PVVYKRTFTLARNVDVAAVSAESFENGVLTLVVPKKEQTPPRKIAIE*
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spliced messenger RNA

>Ggra6565.t1 ID=Ggra6565.t1|Name=Ggra6565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000081_pilon:284989..285432+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGTACATCACACCTTTCGACATTCCGAGCTTCACCTTCTTCGA
GATGGATCCGTGCGTTCAGCGCAAAGCCAAACCGACCGCCACCGAGATGA
GCCCCGCCGCGCATACACATCAGCCGAATGACAAGCAAACCGTTCTTCAG
GTTGACTTACCGGGTGTGCAGAAGGAACAGGTGTCTGTTGAAGTGAATGG
TAACAAACTAACAGTTACCGGGAAGAGGAATAGATTCAACAACGATTCCG
CGGATAAGGCCGACAAACAGGCCGACGACGATGCCGCAGAGGAACGCACC
CCTGTTGTCTATAAGAGGACTTTTACTCTGGCGCGTAATGTTGACGTGGC
GGCTGTCAGCGCCGAAAGCTTTGAGAATGGAGTTCTGACCCTTGTCGTTC
CTAAGAAGGAGCAAACTCCACCGAGGAAGATCGCTATTGAGTGA
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protein sequence of Ggra6565.t1

>Ggra6565.t1 ID=Ggra6565.t1|Name=Ggra6565.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MVMYITPFDIPSFTFFEMDPCVQRKAKPTATEMSPAAHTHQPNDKQTVLQ
VDLPGVQKEQVSVEVNGNKLTVTGKRNRFNNDSADKADKQADDDAAEERT
PVVYKRTFTLARNVDVAAVSAESFENGVLTLVVPKKEQTPPRKIAIE*
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mRNA from alignment at tig00000081_pilon:284989..285432+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6565.t1 ID=Ggra6565.t1|Name=Ggra6565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000081_pilon:284989..285432+ (Gracilaria gracilis GNS1m male)
ATGGTCATGTACATCACACCTTTCGACATTCCGAGCTTCACCTTCTTCGA
GATGGATCCGTGCGTTCAGCGCAAAGCCAAACCGACCGCCACCGAGATGA
GCCCCGCCGCGCATACACATCAGCCGAATGACAAGCAAACCGTTCTTCAG
GTTGACTTACCGGGTGTGCAGAAGGAACAGGTGTCTGTTGAAGTGAATGG
TAACAAACTAACAGTTACCGGGAAGAGGAATAGATTCAACAACGATTCCG
CGGATAAGGCCGACAAACAGGCCGACGACGATGCCGCAGAGGAACGCACC
CCTGTTGTCTATAAGAGGACTTTTACTCTGGCGCGTAATGTTGACGTGGC
GGCTGTCAGCGCCGAAAGCTTTGAGAATGGAGTTCTGACCCTTGTCGTTC
CTAAGAAGGAGCAAACTCCACCGAGGAAGATCGCTATTGAGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:284989..285432+

>Ggra6565.t1 ID=Ggra6565.t1|Name=Ggra6565.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000081_pilon:284989..285432+ (Gracilaria gracilis GNS1m male)
ATGGTCATGTACATCACACCTTTCGACATTCCGAGCTTCACCTTCTTCGA
GATGGATCCGTGCGTTCAGCGCAAAGCCAAACCGACCGCCACCGAGATGA
GCCCCGCCGCGCATACACATCAGCCGAATGACAAGCAAACCGTTCTTCAG
GTTGACTTACCGGGTGTGCAGAAGGAACAGGTGTCTGTTGAAGTGAATGG
TAACAAACTAACAGTTACCGGGAAGAGGAATAGATTCAACAACGATTCCG
CGGATAAGGCCGACAAACAGGCCGACGACGATGCCGCAGAGGAACGCACC
CCTGTTGTCTATAAGAGGACTTTTACTCTGGCGCGTAATGTTGACGTGGC
GGCTGTCAGCGCCGAAAGCTTTGAGAATGGAGTTCTGACCCTTGTCGTTC
CTAAGAAGGAGCAAACTCCACCGAGGAAGATCGCTATTGAGTGA
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