Ggra656.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra656.t1
Unique NameGgra656.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000947_piloncontigtig00000947_pilon:39228..40749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122135.KB893135_gene1054
Preferred nameppdK
PFAMsPEP-utilizers,PEP-utilizers_C,PPDK_N
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00002,RC00015
KEGG koko:K01006
KEGG ReactionR00206
KEGG Pathwayko00620,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00169,M00171,M00172,M00173
Evalue9.42e-214
EggNOG OGsCOG0574@1|root,COG1080@1|root,COG0574@2|Bacteria,COG1080@2|Bacteria,1MU0R@1224|Proteobacteria,2TR3C@28211|Alphaproteobacteria
EC2.7.9.1
DescriptionPyruvate phosphate dikinase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra656Ggra656Gracilaria gracilis GNS1m malegenetig00000947_pilon 28034..40749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1Ggra656.t1Gracilaria gracilis GNS1m malepolypeptidetig00000947_pilon 39228..40749 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1.start1Ggra656.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000947_pilon 39228..39230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1.CDS1Ggra656.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000947_pilon 39228..39699 +
Ggra656.t1.CDS2Ggra656.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000947_pilon 39761..40749 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1.exon1Ggra656.t1.exon1Gracilaria gracilis GNS1m maleexontig00000947_pilon 39228..39699 +
Ggra656.t1.exon2Ggra656.t1.exon2Gracilaria gracilis GNS1m maleexontig00000947_pilon 39761..40749 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1.intron1Ggra656.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000947_pilon 39700..39760 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra656.t1.stop1Ggra656.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000947_pilon 40747..40749 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra656.t1 ID=Ggra656.t1|Name=Ggra656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MGDDSATGVVFTRDPATGENALYGKYLFNAQGEDVVAGIRTPQQLTVAGK
LAHRSKLPAMEEVMPEVSQELNSVRYNLEKHYGDMQDNEFTVQRSKLYML
QTRVGKQTASAALKIACDMVDEGVINEDQAIMRVDPTSLNQLLDPALDPK
AERRIIAPERLAHAGEKAILCRAETSPEDIHGMHAAVGIVTTRGGMTSHA
AVVARGMGRPCVAGASEISIDYEANTMSVRGLMLKEGDLVTLDGGSGEVM
SGFVPTIEPELSGDFSRLMGWADANRKLGVLVDADTPKDCRKALEFGAEG
IGLCRTEHMFFEAGRIVAVREMILANSEEGRRKALTKFLPMQRDDFAEIF
RIMHGRPVTIRLLDPPLHEFLPHGEAEMHEVAEAAGVSVEFVRERVIKVR
EVNPMLGHRGCRLGITYPEVYEMQTLAIIEAAAIVAKETDFKVEVEIMIP
FVAVESELRIVKENVDEVARDVLKVTSRKCTTWLEQ*
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spliced messenger RNA

>Ggra656.t1 ID=Ggra656.t1|Name=Ggra656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000947_pilon:39228..40749+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATGACTCCGCTACTGGTGTGGTTTTCACGCGCGATCCTGCTAC
TGGTGAGAATGCTTTGTATGGTAAGTATCTTTTCAATGCTCAAGGAGAGG
ATGTCGTGGCTGGAATCCGTACTCCACAACAACTGACTGTTGCTGGTAAG
TTAGCGCATCGTTCAAAGTTACCAGCCATGGAAGAGGTCATGCCGGAAGT
GTCCCAGGAATTAAATTCTGTGCGCTACAATCTGGAGAAGCATTATGGAG
ACATGCAGGACAATGAGTTCACTGTTCAACGCAGTAAGTTGTACATGTTG
CAAACCCGTGTCGGAAAGCAAACTGCTAGTGCTGCGTTGAAGATTGCTTG
CGATATGGTGGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGAGAG
TTGACCCCACATCTCTCAACCAACTGTTGGATCCGGCATTGGATCCGAAA
GCAGAGCGCAGAATCATCGCACCCGAGCGGCTCGCTCATGCCGGCGAGAA
GGCGATTCTGTGCCGCGCAGAAACCTCACCTGAAGATATCCATGGTATGC
ATGCTGCTGTCGGAATTGTGACTACGAGGGGCGGCATGACAAGCCATGCT
GCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGGCTGGCGCTTCTGA
AATCAGTATCGACTATGAGGCGAATACAATGAGCGTTCGCGGGTTGATGT
TGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAGCGGAGAGGTAATG
TCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAGGAGATTTCTCAAG
ATTGATGGGATGGGCGGACGCGAATCGAAAGCTAGGCGTGCTTGTCGACG
CCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATTTGGGGCAGAGGGT
ATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAGCCGGAAGAATCGT
GGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAAGGCAGGAGAAAGG
CTCTGACGAAATTTTTGCCAATGCAGCGTGACGACTTCGCGGAGATTTTC
CGCATAATGCATGGACGTCCTGTGACGATTCGCCTCTTGGACCCGCCGCT
GCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCATGAAGTTGCAGAAG
CTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGTAATTAAGGTGCGT
GAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGCTGGGCATAACGTA
TCCAGAGGTTTATGAGATGCAGACGCTTGCTATCATTGAAGCAGCTGCTA
TCGTTGCGAAGGAAACAGACTTCAAAGTCGAGGTGGAGATCATGATTCCA
TTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGGAGAATGTTGACGA
AGTTGCGAGGGACGTTCTAAAGGTGACAAGCAGAAAGTGCACTACGTGGT
TGGAACAATGA
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protein sequence of Ggra656.t1

>Ggra656.t1 ID=Ggra656.t1|Name=Ggra656.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MGDDSATGVVFTRDPATGENALYGKYLFNAQGEDVVAGIRTPQQLTVAGK
LAHRSKLPAMEEVMPEVSQELNSVRYNLEKHYGDMQDNEFTVQRSKLYML
QTRVGKQTASAALKIACDMVDEGVINEDQAIMRVDPTSLNQLLDPALDPK
AERRIIAPERLAHAGEKAILCRAETSPEDIHGMHAAVGIVTTRGGMTSHA
AVVARGMGRPCVAGASEISIDYEANTMSVRGLMLKEGDLVTLDGGSGEVM
SGFVPTIEPELSGDFSRLMGWADANRKLGVLVDADTPKDCRKALEFGAEG
IGLCRTEHMFFEAGRIVAVREMILANSEEGRRKALTKFLPMQRDDFAEIF
RIMHGRPVTIRLLDPPLHEFLPHGEAEMHEVAEAAGVSVEFVRERVIKVR
EVNPMLGHRGCRLGITYPEVYEMQTLAIIEAAAIVAKETDFKVEVEIMIP
FVAVESELRIVKENVDEVARDVLKVTSRKCTTWLEQ*
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mRNA from alignment at tig00000947_pilon:39228..40749+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra656.t1 ID=Ggra656.t1|Name=Ggra656.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1522bp|location=Sequence derived from alignment at tig00000947_pilon:39228..40749+ (Gracilaria gracilis GNS1m male)
ATGGGCGATGACTCCGCTACTGGTGTGGTTTTCACGCGCGATCCTGCTAC
TGGTGAGAATGCTTTGTATGGTAAGTATCTTTTCAATGCTCAAGGAGAGG
ATGTCGTGGCTGGAATCCGTACTCCACAACAACTGACTGTTGCTGGTAAG
TTAGCGCATCGTTCAAAGTTACCAGCCATGGAAGAGGTCATGCCGGAAGT
GTCCCAGGAATTAAATTCTGTGCGCTACAATCTGGAGAAGCATTATGGAG
ACATGCAGGACAATGAGTTCACTGTTCAACGCAGTAAGTTGTACATGTTG
CAAACCCGTGTCGGAAAGCAAACTGCTAGTGCTGCGTTGAAGATTGCTTG
CGATATGGTGGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGAGAG
TTGACCCCACATCTCTCAACCAACTGTTGGATCCGGCATTGGATCCGAAA
GCAGAGCGCAGAATCATCGCACGTGGGTTGCCTGCTTCACCAGGAGCAAC
TTCGGGACACATTGTTTTTAAGTGCCGATGAAGCCGAGCGGCTCGCTCAT
GCCGGCGAGAAGGCGATTCTGTGCCGCGCAGAAACCTCACCTGAAGATAT
CCATGGTATGCATGCTGCTGTCGGAATTGTGACTACGAGGGGCGGCATGA
CAAGCCATGCTGCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGGCT
GGCGCTTCTGAAATCAGTATCGACTATGAGGCGAATACAATGAGCGTTCG
CGGGTTGATGTTGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAGCG
GAGAGGTAATGTCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAGGA
GATTTCTCAAGATTGATGGGATGGGCGGACGCGAATCGAAAGCTAGGCGT
GCTTGTCGACGCCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATTTG
GGGCAGAGGGTATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAGCC
GGAAGAATCGTGGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAAGG
CAGGAGAAAGGCTCTGACGAAATTTTTGCCAATGCAGCGTGACGACTTCG
CGGAGATTTTCCGCATAATGCATGGACGTCCTGTGACGATTCGCCTCTTG
GACCCGCCGCTGCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCATGA
AGTTGCAGAAGCTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGTAA
TTAAGGTGCGTGAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGCTG
GGCATAACGTATCCAGAGGTTTATGAGATGCAGACGCTTGCTATCATTGA
AGCAGCTGCTATCGTTGCGAAGGAAACAGACTTCAAAGTCGAGGTGGAGA
TCATGATTCCATTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGGAG
AATGTTGACGAAGTTGCGAGGGACGTTCTAAAGGTGACAAGCAGAAAGTG
CACTACGTGGTTGGAACAATGA
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Coding sequence (CDS) from alignment at tig00000947_pilon:39228..40749+

>Ggra656.t1 ID=Ggra656.t1|Name=Ggra656.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000947_pilon:39228..40749+ (Gracilaria gracilis GNS1m male)
ATGGGCGATGACTCCGCTACTGGTGTGGTTTTCACGCGCGATCCTGCTAC
TGGTGAGAATGCTTTGTATGGTAAGTATCTTTTCAATGCTCAAGGAGAGG
ATGTCGTGGCTGGAATCCGTACTCCACAACAACTGACTGTTGCTGGTAAG
TTAGCGCATCGTTCAAAGTTACCAGCCATGGAAGAGGTCATGCCGGAAGT
GTCCCAGGAATTAAATTCTGTGCGCTACAATCTGGAGAAGCATTATGGAG
ACATGCAGGACAATGAGTTCACTGTTCAACGCAGTAAGTTGTACATGTTG
CAAACCCGTGTCGGAAAGCAAACTGCTAGTGCTGCGTTGAAGATTGCTTG
CGATATGGTGGATGAAGGTGTTATCAATGAGGATCAGGCTATTATGAGAG
TTGACCCCACATCTCTCAACCAACTGTTGGATCCGGCATTGGATCCGAAA
GCAGAGCGCAGAATCATCGCACCCGAGCGGCTCGCTCATGCCGGCGAGAA
GGCGATTCTGTGCCGCGCAGAAACCTCACCTGAAGATATCCATGGTATGC
ATGCTGCTGTCGGAATTGTGACTACGAGGGGCGGCATGACAAGCCATGCT
GCCGTTGTTGCTCGAGGTATGGGTCGACCATGTGTGGCTGGCGCTTCTGA
AATCAGTATCGACTATGAGGCGAATACAATGAGCGTTCGCGGGTTGATGT
TGAAGGAAGGCGATCTGGTCACCCTTGATGGCGGAAGCGGAGAGGTAATG
TCCGGGTTTGTCCCAACTATTGAACCGGAGCTGTCAGGAGATTTCTCAAG
ATTGATGGGATGGGCGGACGCGAATCGAAAGCTAGGCGTGCTTGTCGACG
CCGACACACCGAAAGACTGCCGCAAAGCGTTAGAATTTGGGGCAGAGGGT
ATCGGACTCTGTCGCACAGAACACATGTTCTTTGAAGCCGGAAGAATCGT
GGCAGTGCGTGAAATGATCTTGGCGAATAGTGAAGAAGGCAGGAGAAAGG
CTCTGACGAAATTTTTGCCAATGCAGCGTGACGACTTCGCGGAGATTTTC
CGCATAATGCATGGACGTCCTGTGACGATTCGCCTCTTGGACCCGCCGCT
GCACGAGTTTCTGCCACATGGTGAGGCAGAGATGCATGAAGTTGCAGAAG
CTGCTGGCGTGAGCGTTGAATTCGTGCGAGAGCGCGTAATTAAGGTGCGT
GAAGTGAACCCAATGCTGGGACATCGTGGATGTCGGCTGGGCATAACGTA
TCCAGAGGTTTATGAGATGCAGACGCTTGCTATCATTGAAGCAGCTGCTA
TCGTTGCGAAGGAAACAGACTTCAAAGTCGAGGTGGAGATCATGATTCCA
TTTGTCGCAGTTGAGTCTGAGTTACGGATCGTGAAGGAGAATGTTGACGA
AGTTGCGAGGGACGTTCTAAAGGTGACAAGCAGAAAGTGCACTACGTGGT
TGGAACAATGA
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