Ggra6557.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6557.t1
Unique NameGgra6557.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:264180..264875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6557Ggra6557Gracilaria gracilis GNS1m malegenetig00000081_pilon 264180..264875 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6557.t1.stop1Ggra6557.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 264180..264182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6557.t1.CDS1Ggra6557.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 264180..264875 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6557.t1.exon1Ggra6557.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 264180..264875 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6557.t1.start1Ggra6557.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 264873..264875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6557.t1Ggra6557.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 264180..264875 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6557.t1 ID=Ggra6557.t1|Name=Ggra6557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MVTSAVHLSKIWFGDEYRADLLLSRGKYSAISIRECEKCVILTQVIVRRR
QRRRRTLQSPKLFLSPRTGVGSVVVDRRDTTVLELNHLAEERHRKMRIVS
VKGPENDFERLMQQIANGVFVRMGIRRRQNGLKVSVLDSHLTRISSRYCR
DLIEFGMGVDDEQFCPFVFEVSFSEENKGQYAELFFNQICRSREARRRMK
TFCHVGVAAMGDKERIVLIVLFSTRKFNVKT*
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spliced messenger RNA

>Ggra6557.t1 ID=Ggra6557.t1|Name=Ggra6557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000081_pilon:264180..264875- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGACCTCTGCGGTGCATCTATCTAAAATATGGTTTGGAGACGAGTA
TCGAGCGGACCTGCTTCTCTCCCGAGGTAAGTATTCGGCAATTTCTATTC
GAGAATGTGAGAAATGTGTCATCCTTACCCAGGTGATAGTAAGAAGAAGA
CAACGGCGCAGAAGGACACTTCAAAGTCCAAAACTGTTCCTATCACCGCG
CACCGGGGTCGGAAGCGTTGTGGTGGACAGACGGGACACAACTGTGCTGG
AATTGAACCACCTCGCAGAAGAACGTCACCGCAAAATGCGAATTGTTTCG
GTAAAGGGGCCAGAAAATGACTTTGAACGATTGATGCAGCAAATCGCCAA
TGGTGTATTCGTCAGAATGGGCATACGTCGGCGCCAGAATGGCCTCAAGG
TATCAGTTCTAGACTCTCATCTGACTCGAATTTCAAGTCGCTATTGCCGG
GATCTAATCGAATTTGGTATGGGTGTAGACGACGAACAGTTTTGTCCTTT
TGTTTTTGAGGTAAGCTTCAGCGAAGAGAATAAGGGTCAGTACGCAGAAT
TGTTTTTCAACCAAATATGCAGGTCAAGAGAAGCGCGTCGGCGCATGAAG
ACGTTTTGTCATGTAGGGGTTGCAGCAATGGGAGACAAAGAACGAATAGT
GCTTATAGTCCTTTTCAGCACTCGCAAGTTCAATGTCAAGACCTGA
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protein sequence of Ggra6557.t1

>Ggra6557.t1 ID=Ggra6557.t1|Name=Ggra6557.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MVTSAVHLSKIWFGDEYRADLLLSRGKYSAISIRECEKCVILTQVIVRRR
QRRRRTLQSPKLFLSPRTGVGSVVVDRRDTTVLELNHLAEERHRKMRIVS
VKGPENDFERLMQQIANGVFVRMGIRRRQNGLKVSVLDSHLTRISSRYCR
DLIEFGMGVDDEQFCPFVFEVSFSEENKGQYAELFFNQICRSREARRRMK
TFCHVGVAAMGDKERIVLIVLFSTRKFNVKT*
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mRNA from alignment at tig00000081_pilon:264180..264875-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6557.t1 ID=Ggra6557.t1|Name=Ggra6557.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000081_pilon:264180..264875- (Gracilaria gracilis GNS1m male)
ATGGTGACCTCTGCGGTGCATCTATCTAAAATATGGTTTGGAGACGAGTA
TCGAGCGGACCTGCTTCTCTCCCGAGGTAAGTATTCGGCAATTTCTATTC
GAGAATGTGAGAAATGTGTCATCCTTACCCAGGTGATAGTAAGAAGAAGA
CAACGGCGCAGAAGGACACTTCAAAGTCCAAAACTGTTCCTATCACCGCG
CACCGGGGTCGGAAGCGTTGTGGTGGACAGACGGGACACAACTGTGCTGG
AATTGAACCACCTCGCAGAAGAACGTCACCGCAAAATGCGAATTGTTTCG
GTAAAGGGGCCAGAAAATGACTTTGAACGATTGATGCAGCAAATCGCCAA
TGGTGTATTCGTCAGAATGGGCATACGTCGGCGCCAGAATGGCCTCAAGG
TATCAGTTCTAGACTCTCATCTGACTCGAATTTCAAGTCGCTATTGCCGG
GATCTAATCGAATTTGGTATGGGTGTAGACGACGAACAGTTTTGTCCTTT
TGTTTTTGAGGTAAGCTTCAGCGAAGAGAATAAGGGTCAGTACGCAGAAT
TGTTTTTCAACCAAATATGCAGGTCAAGAGAAGCGCGTCGGCGCATGAAG
ACGTTTTGTCATGTAGGGGTTGCAGCAATGGGAGACAAAGAACGAATAGT
GCTTATAGTCCTTTTCAGCACTCGCAAGTTCAATGTCAAGACCTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:264180..264875-

>Ggra6557.t1 ID=Ggra6557.t1|Name=Ggra6557.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000081_pilon:264180..264875- (Gracilaria gracilis GNS1m male)
ATGGTGACCTCTGCGGTGCATCTATCTAAAATATGGTTTGGAGACGAGTA
TCGAGCGGACCTGCTTCTCTCCCGAGGTAAGTATTCGGCAATTTCTATTC
GAGAATGTGAGAAATGTGTCATCCTTACCCAGGTGATAGTAAGAAGAAGA
CAACGGCGCAGAAGGACACTTCAAAGTCCAAAACTGTTCCTATCACCGCG
CACCGGGGTCGGAAGCGTTGTGGTGGACAGACGGGACACAACTGTGCTGG
AATTGAACCACCTCGCAGAAGAACGTCACCGCAAAATGCGAATTGTTTCG
GTAAAGGGGCCAGAAAATGACTTTGAACGATTGATGCAGCAAATCGCCAA
TGGTGTATTCGTCAGAATGGGCATACGTCGGCGCCAGAATGGCCTCAAGG
TATCAGTTCTAGACTCTCATCTGACTCGAATTTCAAGTCGCTATTGCCGG
GATCTAATCGAATTTGGTATGGGTGTAGACGACGAACAGTTTTGTCCTTT
TGTTTTTGAGGTAAGCTTCAGCGAAGAGAATAAGGGTCAGTACGCAGAAT
TGTTTTTCAACCAAATATGCAGGTCAAGAGAAGCGCGTCGGCGCATGAAG
ACGTTTTGTCATGTAGGGGTTGCAGCAATGGGAGACAAAGAACGAATAGT
GCTTATAGTCCTTTTCAGCACTCGCAAGTTCAATGTCAAGACCTGA
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