Ggra6553.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6553.t1
Unique NameGgra6553.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:250414..251674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6553Ggra6553Gracilaria gracilis GNS1m malegenetig00000081_pilon 250414..251674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1Ggra6553.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 250414..251674 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1.start1Ggra6553.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 250414..250416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1.CDS1Ggra6553.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 250414..250725 +
Ggra6553.t1.CDS2Ggra6553.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 250811..250843 +
Ggra6553.t1.CDS3Ggra6553.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 250941..250997 +
Ggra6553.t1.CDS4Ggra6553.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000081_pilon 251099..251205 +
Ggra6553.t1.CDS5Ggra6553.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000081_pilon 251284..251674 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1.exon1Ggra6553.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 250414..250725 +
Ggra6553.t1.exon2Ggra6553.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 250811..250843 +
Ggra6553.t1.exon3Ggra6553.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 250941..250997 +
Ggra6553.t1.exon4Ggra6553.t1.exon4Gracilaria gracilis GNS1m maleexontig00000081_pilon 251099..251205 +
Ggra6553.t1.exon5Ggra6553.t1.exon5Gracilaria gracilis GNS1m maleexontig00000081_pilon 251284..251674 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1.intron1Ggra6553.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 250726..250810 +
Ggra6553.t1.intron2Ggra6553.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 250844..250940 +
Ggra6553.t1.intron3Ggra6553.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000081_pilon 250998..251098 +
Ggra6553.t1.intron4Ggra6553.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000081_pilon 251206..251283 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6553.t1.stop1Ggra6553.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 251672..251674 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6553.t1 ID=Ggra6553.t1|Name=Ggra6553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MAQSAPHLRPRTRPSHSNVQDETAIVKLARRLIAIEDGCPPSLGTIFSVS
DDVPERFDARNPPDGILSNSREARVLQKLYDSKTIVKCHIESCKKSFKGF
GQILHHKRTERDMASEAKPNLRAKWSETEFRKISKRKSRRLRSPRIHICL
DEKCLASFNKGFNANRHYYTQHRVRGRNHVGKAMVDDSAGARSVESSHSS
SDPMDFENASNYGGTRSSHGKPGGARGDHVNGAEQSSHTTVTHSYGDGSA
GDVSREVSSDIREGALSLMKLRYPDEVMPDGRRRESNGRKYPRYSGRFC*
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spliced messenger RNA

>Ggra6553.t1 ID=Ggra6553.t1|Name=Ggra6553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000081_pilon:250414..251674+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAATCAGCCCCTCACCTTCGCCCCAGAACACGTCCGTCGCATAG
CAACGTGCAAGATGAAACCGCCATCGTCAAGCTGGCCAGACGGCTGATAG
CTATAGAAGATGGATGCCCGCCTTCACTCGGTACCATCTTCTCAGTTTCG
GATGATGTACCGGAACGCTTTGACGCGCGGAATCCACCAGATGGAATTCT
GAGCAACTCCAGAGAAGCTAGAGTGCTGCAAAAATTGTACGACAGCAAGA
CTATTGTCAAGTGTCATATTGAGAGTTGCAAGAAGAGTTTTAAAGGATTC
GGCCAAATTCTGCATCACAAGAGGACGGAGAGGGACATGGCATCAGAGGC
GAAGCCCAACTTGCGCGCCAAATGGAGTGAAACTGAGTTTCGCAAAATTT
CTAAGAGGAAATCGAGGCGGCTAAGGTCTCCACGAATTCACATCTGTCTT
GATGAAAAATGCTTAGCGTCCTTCAACAAGGGCTTCAATGCCAATCGGCA
TTATTACACACAACACAGGGTGCGAGGCCGAAACCATGTGGGGAAGGCAA
TGGTTGACGACAGCGCCGGTGCGAGAAGCGTTGAGTCTTCACATAGTTCG
TCAGACCCAATGGATTTCGAAAATGCTAGCAACTACGGTGGTACGAGAAG
TTCCCATGGCAAACCAGGTGGAGCACGTGGTGACCATGTCAACGGTGCGG
AACAAAGTAGTCACACTACGGTGACACACTCATATGGTGACGGTTCGGCA
GGTGACGTCAGTCGTGAAGTAAGCAGTGACATCAGAGAGGGAGCTCTCTC
CTTGATGAAGCTTCGATATCCTGATGAGGTGATGCCGGATGGCCGGCGGA
GAGAGTCTAATGGCAGAAAGTACCCGAGGTATTCTGGCCGATTTTGCTGA
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protein sequence of Ggra6553.t1

>Ggra6553.t1 ID=Ggra6553.t1|Name=Ggra6553.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MAQSAPHLRPRTRPSHSNVQDETAIVKLARRLIAIEDGCPPSLGTIFSVS
DDVPERFDARNPPDGILSNSREARVLQKLYDSKTIVKCHIESCKKSFKGF
GQILHHKRTERDMASEAKPNLRAKWSETEFRKISKRKSRRLRSPRIHICL
DEKCLASFNKGFNANRHYYTQHRVRGRNHVGKAMVDDSAGARSVESSHSS
SDPMDFENASNYGGTRSSHGKPGGARGDHVNGAEQSSHTTVTHSYGDGSA
GDVSREVSSDIREGALSLMKLRYPDEVMPDGRRRESNGRKYPRYSGRFC*
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mRNA from alignment at tig00000081_pilon:250414..251674+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6553.t1 ID=Ggra6553.t1|Name=Ggra6553.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1261bp|location=Sequence derived from alignment at tig00000081_pilon:250414..251674+ (Gracilaria gracilis GNS1m male)
ATGGCTCAATCAGCCCCTCACCTTCGCCCCAGAACACGTCCGTCGCATAG
CAACGTGCAAGATGAAACCGCCATCGTCAAGCTGGCCAGACGGCTGATAG
CTATAGAAGATGGATGCCCGCCTTCACTCGGTACCATCTTCTCAGTTTCG
GATGATGTACCGGAACGCTTTGACGCGCGGAATCCACCAGATGGAATTCT
GAGCAACTCCAGAGAAGCTAGAGTGCTGCAAAAATTGTACGACAGCAAGA
CTATTGTCAAGTGTCATATTGAGAGTTGCAAGAAGAGTTTTAAAGGATTC
GGCCAAATTCTGGTACGTATCGTCACTCTTTTTTTTTGTTCTCGCCATTG
GGCAATGGAATTAGAATGCTAACTCGACTTCCTATTCTGGTTGGTAGCAT
CACAAGAGGACGGAGAGGGACATGGCATCAGTAAGTTTTCTATCACCATA
TCATATGCTCGATTTTGTATGAAGCGTCTCGTAATTATTGTTCTAATACT
GTGGTCTATTTTTGCAACTCAAAAAAGGAGGCGAAGCCCAACTTGCGCGC
CAAATGGAGTGAAACTGAGTTTCGCAAAATTTCTGTATGTGATCCGATAT
TGTTCTCTTCGCACGCCGCTCTTGACCCTCTTTCCGTGTTCAGCGTTGAA
GGCCTCTAACAACAAATCTTCCTTCCACGCCGCAGAAGAGGAAATCGAGG
CGGCTAAGGTCTCCACGAATTCACATCTGTCTTGATGAAAAATGCTTAGC
GTCCTTCAACAAGGGCTTCAATGCCAATCGGCATTATTACACGTAAGTCT
ATTCCCAGAAACGAAGCAAGAACGGTATGCATGAACTAACTTGGAGCACG
TGGGCGGAATGGAAGAACAGACAACACAGGGTGCGAGGCCGAAACCATGT
GGGGAAGGCAATGGTTGACGACAGCGCCGGTGCGAGAAGCGTTGAGTCTT
CACATAGTTCGTCAGACCCAATGGATTTCGAAAATGCTAGCAACTACGGT
GGTACGAGAAGTTCCCATGGCAAACCAGGTGGAGCACGTGGTGACCATGT
CAACGGTGCGGAACAAAGTAGTCACACTACGGTGACACACTCATATGGTG
ACGGTTCGGCAGGTGACGTCAGTCGTGAAGTAAGCAGTGACATCAGAGAG
GGAGCTCTCTCCTTGATGAAGCTTCGATATCCTGATGAGGTGATGCCGGA
TGGCCGGCGGAGAGAGTCTAATGGCAGAAAGTACCCGAGGTATTCTGGCC
GATTTTGCTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:250414..251674+

>Ggra6553.t1 ID=Ggra6553.t1|Name=Ggra6553.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000081_pilon:250414..251674+ (Gracilaria gracilis GNS1m male)
ATGGCTCAATCAGCCCCTCACCTTCGCCCCAGAACACGTCCGTCGCATAG
CAACGTGCAAGATGAAACCGCCATCGTCAAGCTGGCCAGACGGCTGATAG
CTATAGAAGATGGATGCCCGCCTTCACTCGGTACCATCTTCTCAGTTTCG
GATGATGTACCGGAACGCTTTGACGCGCGGAATCCACCAGATGGAATTCT
GAGCAACTCCAGAGAAGCTAGAGTGCTGCAAAAATTGTACGACAGCAAGA
CTATTGTCAAGTGTCATATTGAGAGTTGCAAGAAGAGTTTTAAAGGATTC
GGCCAAATTCTGCATCACAAGAGGACGGAGAGGGACATGGCATCAGAGGC
GAAGCCCAACTTGCGCGCCAAATGGAGTGAAACTGAGTTTCGCAAAATTT
CTAAGAGGAAATCGAGGCGGCTAAGGTCTCCACGAATTCACATCTGTCTT
GATGAAAAATGCTTAGCGTCCTTCAACAAGGGCTTCAATGCCAATCGGCA
TTATTACACACAACACAGGGTGCGAGGCCGAAACCATGTGGGGAAGGCAA
TGGTTGACGACAGCGCCGGTGCGAGAAGCGTTGAGTCTTCACATAGTTCG
TCAGACCCAATGGATTTCGAAAATGCTAGCAACTACGGTGGTACGAGAAG
TTCCCATGGCAAACCAGGTGGAGCACGTGGTGACCATGTCAACGGTGCGG
AACAAAGTAGTCACACTACGGTGACACACTCATATGGTGACGGTTCGGCA
GGTGACGTCAGTCGTGAAGTAAGCAGTGACATCAGAGAGGGAGCTCTCTC
CTTGATGAAGCTTCGATATCCTGATGAGGTGATGCCGGATGGCCGGCGGA
GAGAGTCTAATGGCAGAAAGTACCCGAGGTATTCTGGCCGATTTTGCTGA
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