Ggra6551.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6551.t1
Unique NameGgra6551.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:246618..247102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_05403T0
Preferred nameRPL31B
PFAMsRibosomal_L31e
Max annot lvl4751|Fungi
KEGG koko:K02910
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006450,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.7e-44
EggNOG OGsCOG2097@1|root,KOG0893@2759|Eukaryota,3A3JD@33154|Opisthokonta,3P4B8@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6551Ggra6551Gracilaria gracilis GNS1m malegenetig00000081_pilon 246618..247102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1Ggra6551.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 246618..247102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1.CDS1Ggra6551.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 246618..246620 +
Ggra6551.t1.CDS2Ggra6551.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 246749..247102 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1.exon1Ggra6551.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 246618..246620 +
Ggra6551.t1.exon2Ggra6551.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 246749..247102 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1.start1Ggra6551.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 246618..246620 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1.intron1Ggra6551.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 246621..246748 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6551.t1.stop1Ggra6551.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 247100..247102 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6551.t1 ID=Ggra6551.t1|Name=Ggra6551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=119bp
MVKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKLIREFATRTMG
TTDVRVDPKLNKEIWRTGVRNVPYRVRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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spliced messenger RNA

>Ggra6551.t1 ID=Ggra6551.t1|Name=Ggra6551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000081_pilon:246618..247102+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAAGACCGAAAGCCGCGCGGATCCGAAGTGGTCACCCGCGATTA
CACCATCCACCTGCACAAGCGACTATACCGATATGGTTTCAAGAGGAAGG
CCCCGCGTGCCATTAAGCTGATCCGTGAATTCGCGACCAGGACCATGGGA
ACTACCGATGTGCGCGTCGATCCGAAGCTCAACAAGGAGATCTGGAGGAC
CGGTGTCCGCAACGTGCCGTACCGTGTCCGTGTGCGTCTGTCCCGGAAGC
GAAACGACGACGAGGATGCCAAGGAGCCTCTGTACACGCTTGCTTCCTTC
GTTCCCGTTTCTAACCCGCATTGCAAGGGATTGCAGACCACTACAATCGA
GGAGTAA
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protein sequence of Ggra6551.t1

>Ggra6551.t1 ID=Ggra6551.t1|Name=Ggra6551.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=119bp
MVKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKLIREFATRTMG
TTDVRVDPKLNKEIWRTGVRNVPYRVRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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mRNA from alignment at tig00000081_pilon:246618..247102+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6551.t1 ID=Ggra6551.t1|Name=Ggra6551.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp|location=Sequence derived from alignment at tig00000081_pilon:246618..247102+ (Gracilaria gracilis GNS1m male)
ATGGTAAGTCACTACAGATCATGAACTGCAAACACCCCTAATAGCTGCTG
CAGTCGAATGTTTTCCCCGCTGCAGAAACTTTGCGACAAAACAACAGCTA
ACCACAAACATTCTTTCTTCAACCAACACAGGTGAAAGACCGAAAGCCGC
GCGGATCCGAAGTGGTCACCCGCGATTACACCATCCACCTGCACAAGCGA
CTATACCGATATGGTTTCAAGAGGAAGGCCCCGCGTGCCATTAAGCTGAT
CCGTGAATTCGCGACCAGGACCATGGGAACTACCGATGTGCGCGTCGATC
CGAAGCTCAACAAGGAGATCTGGAGGACCGGTGTCCGCAACGTGCCGTAC
CGTGTCCGTGTGCGTCTGTCCCGGAAGCGAAACGACGACGAGGATGCCAA
GGAGCCTCTGTACACGCTTGCTTCCTTCGTTCCCGTTTCTAACCCGCATT
GCAAGGGATTGCAGACCACTACAATCGAGGAGTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:246618..247102+

>Ggra6551.t1 ID=Ggra6551.t1|Name=Ggra6551.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000081_pilon:246618..247102+ (Gracilaria gracilis GNS1m male)
ATGGTGAAAGACCGAAAGCCGCGCGGATCCGAAGTGGTCACCCGCGATTA
CACCATCCACCTGCACAAGCGACTATACCGATATGGTTTCAAGAGGAAGG
CCCCGCGTGCCATTAAGCTGATCCGTGAATTCGCGACCAGGACCATGGGA
ACTACCGATGTGCGCGTCGATCCGAAGCTCAACAAGGAGATCTGGAGGAC
CGGTGTCCGCAACGTGCCGTACCGTGTCCGTGTGCGTCTGTCCCGGAAGC
GAAACGACGACGAGGATGCCAAGGAGCCTCTGTACACGCTTGCTTCCTTC
GTTCCCGTTTCTAACCCGCATTGCAAGGGATTGCAGACCACTACAATCGA
GGAGTAA
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