Ggra6549.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6549.t1
Unique Name	Ggra6549.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:243373..245109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708839.1
Preferred name	PGAM
PFAMs	Metalloenzyme,iPGM_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00536
KEGG ko	ko:K15633
KEGG Reaction	R01518
KEGG Pathway	ko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230
KEGG Module	M00001,M00002,M00003
GOs	GO:0003674,GO:0003824,GO:0004619,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005829,GO:0005886,GO:0005911,GO:0006950,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009506,GO:0009507,GO:0009536,GO:0009555,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010118,GO:0016020,GO:0016853,GO:0016866,GO:0016868,GO:0030054,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046537,GO:0046686,GO:0048046,GO:0048229,GO:0048856,GO:0050896,GO:0055044,GO:0071944
Evalue	4.46e-240
EggNOG OGs	COG0696@1\|root,KOG4513@2759\|Eukaryota
EC	5.4.2.12
Description	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6549	Ggra6549	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 243373..245109 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6549.t1.start1	Ggra6549.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 243373..243375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6549.t1.CDS1	Ggra6549.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 243373..245109 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6549.t1.exon1	Ggra6549.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 243373..245109 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6549.t1.stop1	Ggra6549.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 245107..245109 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6549.t1	Ggra6549.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 243373..245109 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:243373..245109+
coding sequence from alignment at tig00000081_pilon:243373..245109+

mRNA sequence

>Ggra6549.t1 ID=Ggra6549.t1|Name=Ggra6549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp
MASSSSAQTMKLSKKEGFEKPNGPVALIVMDGVGQAPDAEWNAVTTSRTP
FLDKLMAGEGPNGSKSLFCELDASGKSVGLPSMGDMGNSEVGHNALGAGR
VFDQGAKLVNNAFRSGDFKSEVWQWLVEKCAGSDTNTLHMIGLYSDGNVH
AHVNHVFQLIDGAVDDGVKRIRLHLLADGRDVIDRSALDYFGPLEKRLAT
LRKEGIDIWVASGGGRMVTTMDRYEADWGIVENGWRAHCLGDTTLDTFKS
CMSAVEHYYKDDAMVDQYMPPFVIVDDDGNPRGTMQDGDSVLFWNFRGDR
AIEISMAFEAEEGEFSHFDRKRVPDVRYAGMMQYDGDAGIPKRFMVLPPQ
IDRTVGEYVVKNGMKRFSVSETQKYGHVTYFYNGNRAAKFDEDMEKYVCI
PSYRQREHTRPWMKAAEISDSILEEMDSFNPDLMVINYANGDMVGHTGHM
VASRLAMECVDLCLARVLPEIIKRDGVVILTADHGNCDIMAEVGKDGNAK
AGNQPEGWKAKVSHTKQRVPCMIIGKQMDMYEFDTSVKWGDDPECKRAGI
ANLGATVLNLLGMKEPDDFLPSILVPKC*

spliced messenger RNA

>Ggra6549.t1 ID=Ggra6549.t1|Name=Ggra6549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:243373..245109+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTTCAAGCTCTGCCCAAACTATGAAGCTCTCGAAGAAGGAGGG
CTTCGAGAAACCAAATGGCCCCGTTGCCCTTATCGTCATGGACGGCGTCG
GACAGGCGCCCGACGCCGAATGGAACGCTGTCACCACTTCGCGCACCCCG
TTTCTAGACAAGCTCATGGCCGGAGAGGGCCCTAATGGTTCCAAGTCGCT
CTTCTGCGAGCTCGATGCCTCCGGAAAGTCTGTCGGTCTGCCGAGTATGG
GTGATATGGGCAACTCTGAGGTTGGTCACAACGCCCTTGGAGCAGGTCGC
GTCTTTGACCAGGGTGCCAAATTGGTCAACAATGCTTTCCGCTCCGGCGA
TTTTAAGAGCGAGGTCTGGCAATGGCTCGTCGAGAAATGCGCTGGAAGTG
ACACTAACACCCTGCATATGATTGGTCTTTACTCTGACGGAAATGTACAT
GCTCACGTCAATCACGTTTTCCAGCTTATCGATGGAGCTGTCGATGATGG
TGTGAAGAGAATTCGACTTCATCTTCTTGCGGATGGACGTGATGTCATCG
ACAGATCCGCGCTTGACTACTTTGGTCCCCTCGAGAAGCGTCTTGCCACC
TTGAGGAAGGAAGGAATTGACATTTGGGTCGCTAGCGGTGGCGGTCGAAT
GGTTACGACAATGGATCGCTACGAAGCGGACTGGGGTATAGTTGAGAACG
GCTGGAGAGCACATTGCCTTGGCGATACTACTTTGGATACCTTTAAGTCT
TGCATGTCTGCCGTCGAACATTACTACAAAGACGACGCTATGGTTGATCA
GTATATGCCACCGTTTGTTATCGTTGACGATGATGGTAATCCTCGGGGTA
CCATGCAAGATGGCGATTCAGTTCTTTTCTGGAACTTTAGAGGGGATCGT
GCTATCGAGATCTCCATGGCATTTGAAGCCGAAGAAGGAGAATTCAGTCA
TTTTGACCGTAAGCGGGTGCCAGATGTCCGTTACGCTGGTATGATGCAAT
ATGATGGCGATGCCGGTATACCGAAGCGGTTTATGGTCTTACCCCCACAA
ATAGACCGAACTGTAGGCGAGTACGTCGTGAAGAATGGAATGAAGCGGTT
CTCAGTCTCAGAAACGCAGAAGTACGGACATGTAACATATTTCTACAATG
GAAACCGTGCTGCGAAATTTGACGAAGATATGGAGAAGTACGTCTGCATT
CCATCCTACAGGCAGAGAGAGCACACAAGACCATGGATGAAGGCTGCTGA
AATTTCCGATAGCATTCTGGAGGAAATGGATAGTTTCAATCCAGATCTCA
TGGTCATCAACTATGCGAACGGTGATATGGTGGGTCATACCGGGCATATG
GTTGCCTCACGACTTGCTATGGAATGTGTTGACCTTTGTCTTGCACGCGT
TCTTCCTGAAATCATCAAGCGAGATGGAGTGGTGATCCTCACAGCCGACC
ATGGCAACTGCGATATCATGGCTGAGGTAGGCAAGGACGGCAACGCAAAG
GCTGGAAACCAACCTGAAGGCTGGAAAGCCAAGGTGTCCCACACGAAGCA
ACGCGTGCCGTGTATGATTATTGGAAAACAAATGGATATGTACGAGTTTG
ACACCTCTGTCAAATGGGGAGATGATCCGGAGTGCAAGAGGGCTGGTATA
GCCAACCTGGGCGCTACTGTTCTGAACCTACTAGGAATGAAGGAGCCAGA
CGACTTCTTGCCGTCGATCCTGGTTCCGAAATGCTAA

protein sequence of Ggra6549.t1

>Ggra6549.t1 ID=Ggra6549.t1|Name=Ggra6549.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=579bp
MASSSSAQTMKLSKKEGFEKPNGPVALIVMDGVGQAPDAEWNAVTTSRTP
FLDKLMAGEGPNGSKSLFCELDASGKSVGLPSMGDMGNSEVGHNALGAGR
VFDQGAKLVNNAFRSGDFKSEVWQWLVEKCAGSDTNTLHMIGLYSDGNVH
AHVNHVFQLIDGAVDDGVKRIRLHLLADGRDVIDRSALDYFGPLEKRLAT
LRKEGIDIWVASGGGRMVTTMDRYEADWGIVENGWRAHCLGDTTLDTFKS
CMSAVEHYYKDDAMVDQYMPPFVIVDDDGNPRGTMQDGDSVLFWNFRGDR
AIEISMAFEAEEGEFSHFDRKRVPDVRYAGMMQYDGDAGIPKRFMVLPPQ
IDRTVGEYVVKNGMKRFSVSETQKYGHVTYFYNGNRAAKFDEDMEKYVCI
PSYRQREHTRPWMKAAEISDSILEEMDSFNPDLMVINYANGDMVGHTGHM
VASRLAMECVDLCLARVLPEIIKRDGVVILTADHGNCDIMAEVGKDGNAK
AGNQPEGWKAKVSHTKQRVPCMIIGKQMDMYEFDTSVKWGDDPECKRAGI
ANLGATVLNLLGMKEPDDFLPSILVPKC*

mRNA from alignment at tig00000081_pilon:243373..245109+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6549.t1 ID=Ggra6549.t1|Name=Ggra6549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:243373..245109+ (Gracilaria gracilis GNS1m male)
ATGGCATCTTCAAGCTCTGCCCAAACTATGAAGCTCTCGAAGAAGGAGGG
CTTCGAGAAACCAAATGGCCCCGTTGCCCTTATCGTCATGGACGGCGTCG
GACAGGCGCCCGACGCCGAATGGAACGCTGTCACCACTTCGCGCACCCCG
TTTCTAGACAAGCTCATGGCCGGAGAGGGCCCTAATGGTTCCAAGTCGCT
CTTCTGCGAGCTCGATGCCTCCGGAAAGTCTGTCGGTCTGCCGAGTATGG
GTGATATGGGCAACTCTGAGGTTGGTCACAACGCCCTTGGAGCAGGTCGC
GTCTTTGACCAGGGTGCCAAATTGGTCAACAATGCTTTCCGCTCCGGCGA
TTTTAAGAGCGAGGTCTGGCAATGGCTCGTCGAGAAATGCGCTGGAAGTG
ACACTAACACCCTGCATATGATTGGTCTTTACTCTGACGGAAATGTACAT
GCTCACGTCAATCACGTTTTCCAGCTTATCGATGGAGCTGTCGATGATGG
TGTGAAGAGAATTCGACTTCATCTTCTTGCGGATGGACGTGATGTCATCG
ACAGATCCGCGCTTGACTACTTTGGTCCCCTCGAGAAGCGTCTTGCCACC
TTGAGGAAGGAAGGAATTGACATTTGGGTCGCTAGCGGTGGCGGTCGAAT
GGTTACGACAATGGATCGCTACGAAGCGGACTGGGGTATAGTTGAGAACG
GCTGGAGAGCACATTGCCTTGGCGATACTACTTTGGATACCTTTAAGTCT
TGCATGTCTGCCGTCGAACATTACTACAAAGACGACGCTATGGTTGATCA
GTATATGCCACCGTTTGTTATCGTTGACGATGATGGTAATCCTCGGGGTA
CCATGCAAGATGGCGATTCAGTTCTTTTCTGGAACTTTAGAGGGGATCGT
GCTATCGAGATCTCCATGGCATTTGAAGCCGAAGAAGGAGAATTCAGTCA
TTTTGACCGTAAGCGGGTGCCAGATGTCCGTTACGCTGGTATGATGCAAT
ATGATGGCGATGCCGGTATACCGAAGCGGTTTATGGTCTTACCCCCACAA
ATAGACCGAACTGTAGGCGAGTACGTCGTGAAGAATGGAATGAAGCGGTT
CTCAGTCTCAGAAACGCAGAAGTACGGACATGTAACATATTTCTACAATG
GAAACCGTGCTGCGAAATTTGACGAAGATATGGAGAAGTACGTCTGCATT
CCATCCTACAGGCAGAGAGAGCACACAAGACCATGGATGAAGGCTGCTGA
AATTTCCGATAGCATTCTGGAGGAAATGGATAGTTTCAATCCAGATCTCA
TGGTCATCAACTATGCGAACGGTGATATGGTGGGTCATACCGGGCATATG
GTTGCCTCACGACTTGCTATGGAATGTGTTGACCTTTGTCTTGCACGCGT
TCTTCCTGAAATCATCAAGCGAGATGGAGTGGTGATCCTCACAGCCGACC
ATGGCAACTGCGATATCATGGCTGAGGTAGGCAAGGACGGCAACGCAAAG
GCTGGAAACCAACCTGAAGGCTGGAAAGCCAAGGTGTCCCACACGAAGCA
ACGCGTGCCGTGTATGATTATTGGAAAACAAATGGATATGTACGAGTTTG
ACACCTCTGTCAAATGGGGAGATGATCCGGAGTGCAAGAGGGCTGGTATA
GCCAACCTGGGCGCTACTGTTCTGAACCTACTAGGAATGAAGGAGCCAGA
CGACTTCTTGCCGTCGATCCTGGTTCCGAAATGCTAA

Coding sequence (CDS) from alignment at tig00000081_pilon:243373..245109+

>Ggra6549.t1 ID=Ggra6549.t1|Name=Ggra6549.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00000081_pilon:243373..245109+ (Gracilaria gracilis GNS1m male)
ATGGCATCTTCAAGCTCTGCCCAAACTATGAAGCTCTCGAAGAAGGAGGG
CTTCGAGAAACCAAATGGCCCCGTTGCCCTTATCGTCATGGACGGCGTCG
GACAGGCGCCCGACGCCGAATGGAACGCTGTCACCACTTCGCGCACCCCG
TTTCTAGACAAGCTCATGGCCGGAGAGGGCCCTAATGGTTCCAAGTCGCT
CTTCTGCGAGCTCGATGCCTCCGGAAAGTCTGTCGGTCTGCCGAGTATGG
GTGATATGGGCAACTCTGAGGTTGGTCACAACGCCCTTGGAGCAGGTCGC
GTCTTTGACCAGGGTGCCAAATTGGTCAACAATGCTTTCCGCTCCGGCGA
TTTTAAGAGCGAGGTCTGGCAATGGCTCGTCGAGAAATGCGCTGGAAGTG
ACACTAACACCCTGCATATGATTGGTCTTTACTCTGACGGAAATGTACAT
GCTCACGTCAATCACGTTTTCCAGCTTATCGATGGAGCTGTCGATGATGG
TGTGAAGAGAATTCGACTTCATCTTCTTGCGGATGGACGTGATGTCATCG
ACAGATCCGCGCTTGACTACTTTGGTCCCCTCGAGAAGCGTCTTGCCACC
TTGAGGAAGGAAGGAATTGACATTTGGGTCGCTAGCGGTGGCGGTCGAAT
GGTTACGACAATGGATCGCTACGAAGCGGACTGGGGTATAGTTGAGAACG
GCTGGAGAGCACATTGCCTTGGCGATACTACTTTGGATACCTTTAAGTCT
TGCATGTCTGCCGTCGAACATTACTACAAAGACGACGCTATGGTTGATCA
GTATATGCCACCGTTTGTTATCGTTGACGATGATGGTAATCCTCGGGGTA
CCATGCAAGATGGCGATTCAGTTCTTTTCTGGAACTTTAGAGGGGATCGT
GCTATCGAGATCTCCATGGCATTTGAAGCCGAAGAAGGAGAATTCAGTCA
TTTTGACCGTAAGCGGGTGCCAGATGTCCGTTACGCTGGTATGATGCAAT
ATGATGGCGATGCCGGTATACCGAAGCGGTTTATGGTCTTACCCCCACAA
ATAGACCGAACTGTAGGCGAGTACGTCGTGAAGAATGGAATGAAGCGGTT
CTCAGTCTCAGAAACGCAGAAGTACGGACATGTAACATATTTCTACAATG
GAAACCGTGCTGCGAAATTTGACGAAGATATGGAGAAGTACGTCTGCATT
CCATCCTACAGGCAGAGAGAGCACACAAGACCATGGATGAAGGCTGCTGA
AATTTCCGATAGCATTCTGGAGGAAATGGATAGTTTCAATCCAGATCTCA
TGGTCATCAACTATGCGAACGGTGATATGGTGGGTCATACCGGGCATATG
GTTGCCTCACGACTTGCTATGGAATGTGTTGACCTTTGTCTTGCACGCGT
TCTTCCTGAAATCATCAAGCGAGATGGAGTGGTGATCCTCACAGCCGACC
ATGGCAACTGCGATATCATGGCTGAGGTAGGCAAGGACGGCAACGCAAAG
GCTGGAAACCAACCTGAAGGCTGGAAAGCCAAGGTGTCCCACACGAAGCA
ACGCGTGCCGTGTATGATTATTGGAAAACAAATGGATATGTACGAGTTTG
ACACCTCTGTCAAATGGGGAGATGATCCGGAGTGCAAGAGGGCTGGTATA
GCCAACCTGGGCGCTACTGTTCTGAACCTACTAGGAATGAAGGAGCCAGA
CGACTTCTTGCCGTCGATCCTGGTTCCGAAATGCTAA