Ggra6547.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6547.t1
Unique NameGgra6547.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:234679..236109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX51470
PFAMsCyclin
Max annot lvl2759|Eukaryota
Evalue8.49e-12
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota
DescriptionCyclin-dependent protein kinase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6547Ggra6547Gracilaria gracilis GNS1m malegenetig00000081_pilon 234679..236109 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6547.t1.stop1Ggra6547.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 234679..234681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6547.t1.CDS1Ggra6547.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 234679..236109 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6547.t1.exon1Ggra6547.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 234679..236109 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6547.t1.start1Ggra6547.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 236107..236109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6547.t1Ggra6547.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 234679..236109 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6547.t1 ID=Ggra6547.t1|Name=Ggra6547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp
MAAVNQPGTNNNGVQTVNLTPQQPIVVPGASMARYPLVTRGGALVMVVKA
AMNSRAEKGQHWLDLASASATDVDSFDVATLVLAAPAPWLAKHTLAQVRE
LYHAALHPETSVFDLPSNAPTLDAVVDHVLENAGVSRSALVLACIYVDRL
AAAAPHMFITESNVQRLFGVAFMLAAKWLEDAYYSSARFAELYCMPVQQL
NQLEAAFTAAIGFELFVSTEQFRDAQLALMTEALDTPSSLNIFQALVNAK
VADVHKAFDATRTWGKFPDGGGSAGFWAVAAGLACDVEEHDEEHEIESLE
FSTLEHHPCEAKGRKVVAQLARAQLQHDFPRVPAESFATELQRRFAENGV
FRYAKLQLLAGSQQLDDLVLPPLERVISPPELPPPRAASPTLAERGNSPC
APGGLNSTVLPAHTTRAPAGGSSMPWPMWPGRCLSSRYANINARRPGRTT
AAPEPHNPAGTWSTSHFTDFCPIRSW*
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spliced messenger RNA

>Ggra6547.t1 ID=Ggra6547.t1|Name=Ggra6547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000081_pilon:234679..236109- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTTAACCAGCCCGGGACCAACAACAACGGCGTGCAGACCGT
CAATCTCACGCCGCAGCAGCCAATTGTGGTCCCGGGCGCGTCCATGGCGC
GCTACCCGCTCGTCACCCGGGGTGGCGCGCTTGTAATGGTCGTCAAGGCG
GCCATGAACAGCCGAGCGGAGAAGGGTCAGCATTGGCTCGACCTAGCCTC
TGCTTCCGCCACCGACGTCGACTCCTTCGACGTGGCCACTCTGGTGCTGG
CCGCACCGGCGCCCTGGCTAGCCAAGCACACGCTGGCCCAGGTGCGCGAG
CTCTACCATGCCGCTTTGCACCCCGAGACGTCCGTGTTCGACCTACCGTC
CAACGCTCCCACCCTGGACGCCGTGGTCGACCACGTGCTCGAGAACGCGG
GCGTCTCGCGGTCGGCGCTGGTGCTGGCCTGCATCTACGTGGACCGACTC
GCCGCCGCCGCCCCGCACATGTTCATCACCGAGAGCAACGTGCAAAGGCT
CTTCGGGGTGGCCTTCATGCTGGCGGCGAAGTGGCTCGAGGACGCCTACT
ACTCGTCCGCCCGCTTCGCCGAGCTGTACTGCATGCCTGTGCAGCAGCTC
AACCAGCTGGAAGCTGCCTTTACCGCCGCCATCGGGTTCGAACTGTTCGT
CTCAACCGAGCAGTTCCGGGACGCCCAACTTGCCCTCATGACGGAGGCCC
TCGACACTCCGTCAAGCCTCAACATCTTCCAAGCCCTTGTGAACGCTAAA
GTCGCCGACGTTCACAAGGCGTTTGACGCAACGAGGACATGGGGCAAGTT
TCCTGATGGCGGCGGTTCGGCGGGCTTTTGGGCGGTGGCGGCGGGTCTGG
CGTGCGATGTCGAGGAGCACGACGAGGAGCATGAGATTGAGTCGCTCGAG
TTCTCCACTCTAGAGCACCATCCATGCGAGGCGAAGGGGAGGAAGGTGGT
CGCTCAGCTGGCACGCGCGCAGCTGCAACACGATTTCCCGCGCGTGCCGG
CTGAATCGTTTGCGACCGAGCTGCAGCGGCGGTTTGCGGAGAATGGCGTC
TTCCGCTACGCCAAGCTGCAGCTCTTGGCGGGAAGCCAGCAGCTGGACGA
CCTGGTCCTGCCCCCGCTGGAGCGCGTCATAAGCCCGCCGGAGCTGCCAC
CCCCGCGCGCCGCTTCTCCCACTCTGGCGGAGCGGGGGAACAGTCCCTGT
GCGCCCGGCGGGCTGAATTCGACGGTGTTGCCCGCACACACCACACGCGC
TCCGGCGGGCGGGTCGTCCATGCCCTGGCCGATGTGGCCGGGTCGCTGCC
TTTCTTCGCGGTATGCGAATATAAATGCGCGGCGGCCCGGCCGAACAACA
GCGGCGCCCGAGCCGCACAACCCGGCGGGCACATGGTCCACCTCACACTT
CACGGACTTTTGTCCTATAAGAAGTTGGTGA
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protein sequence of Ggra6547.t1

>Ggra6547.t1 ID=Ggra6547.t1|Name=Ggra6547.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=477bp
MAAVNQPGTNNNGVQTVNLTPQQPIVVPGASMARYPLVTRGGALVMVVKA
AMNSRAEKGQHWLDLASASATDVDSFDVATLVLAAPAPWLAKHTLAQVRE
LYHAALHPETSVFDLPSNAPTLDAVVDHVLENAGVSRSALVLACIYVDRL
AAAAPHMFITESNVQRLFGVAFMLAAKWLEDAYYSSARFAELYCMPVQQL
NQLEAAFTAAIGFELFVSTEQFRDAQLALMTEALDTPSSLNIFQALVNAK
VADVHKAFDATRTWGKFPDGGGSAGFWAVAAGLACDVEEHDEEHEIESLE
FSTLEHHPCEAKGRKVVAQLARAQLQHDFPRVPAESFATELQRRFAENGV
FRYAKLQLLAGSQQLDDLVLPPLERVISPPELPPPRAASPTLAERGNSPC
APGGLNSTVLPAHTTRAPAGGSSMPWPMWPGRCLSSRYANINARRPGRTT
AAPEPHNPAGTWSTSHFTDFCPIRSW*
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mRNA from alignment at tig00000081_pilon:234679..236109-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6547.t1 ID=Ggra6547.t1|Name=Ggra6547.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00000081_pilon:234679..236109- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTTAACCAGCCCGGGACCAACAACAACGGCGTGCAGACCGT
CAATCTCACGCCGCAGCAGCCAATTGTGGTCCCGGGCGCGTCCATGGCGC
GCTACCCGCTCGTCACCCGGGGTGGCGCGCTTGTAATGGTCGTCAAGGCG
GCCATGAACAGCCGAGCGGAGAAGGGTCAGCATTGGCTCGACCTAGCCTC
TGCTTCCGCCACCGACGTCGACTCCTTCGACGTGGCCACTCTGGTGCTGG
CCGCACCGGCGCCCTGGCTAGCCAAGCACACGCTGGCCCAGGTGCGCGAG
CTCTACCATGCCGCTTTGCACCCCGAGACGTCCGTGTTCGACCTACCGTC
CAACGCTCCCACCCTGGACGCCGTGGTCGACCACGTGCTCGAGAACGCGG
GCGTCTCGCGGTCGGCGCTGGTGCTGGCCTGCATCTACGTGGACCGACTC
GCCGCCGCCGCCCCGCACATGTTCATCACCGAGAGCAACGTGCAAAGGCT
CTTCGGGGTGGCCTTCATGCTGGCGGCGAAGTGGCTCGAGGACGCCTACT
ACTCGTCCGCCCGCTTCGCCGAGCTGTACTGCATGCCTGTGCAGCAGCTC
AACCAGCTGGAAGCTGCCTTTACCGCCGCCATCGGGTTCGAACTGTTCGT
CTCAACCGAGCAGTTCCGGGACGCCCAACTTGCCCTCATGACGGAGGCCC
TCGACACTCCGTCAAGCCTCAACATCTTCCAAGCCCTTGTGAACGCTAAA
GTCGCCGACGTTCACAAGGCGTTTGACGCAACGAGGACATGGGGCAAGTT
TCCTGATGGCGGCGGTTCGGCGGGCTTTTGGGCGGTGGCGGCGGGTCTGG
CGTGCGATGTCGAGGAGCACGACGAGGAGCATGAGATTGAGTCGCTCGAG
TTCTCCACTCTAGAGCACCATCCATGCGAGGCGAAGGGGAGGAAGGTGGT
CGCTCAGCTGGCACGCGCGCAGCTGCAACACGATTTCCCGCGCGTGCCGG
CTGAATCGTTTGCGACCGAGCTGCAGCGGCGGTTTGCGGAGAATGGCGTC
TTCCGCTACGCCAAGCTGCAGCTCTTGGCGGGAAGCCAGCAGCTGGACGA
CCTGGTCCTGCCCCCGCTGGAGCGCGTCATAAGCCCGCCGGAGCTGCCAC
CCCCGCGCGCCGCTTCTCCCACTCTGGCGGAGCGGGGGAACAGTCCCTGT
GCGCCCGGCGGGCTGAATTCGACGGTGTTGCCCGCACACACCACACGCGC
TCCGGCGGGCGGGTCGTCCATGCCCTGGCCGATGTGGCCGGGTCGCTGCC
TTTCTTCGCGGTATGCGAATATAAATGCGCGGCGGCCCGGCCGAACAACA
GCGGCGCCCGAGCCGCACAACCCGGCGGGCACATGGTCCACCTCACACTT
CACGGACTTTTGTCCTATAAGAAGTTGGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:234679..236109-

>Ggra6547.t1 ID=Ggra6547.t1|Name=Ggra6547.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00000081_pilon:234679..236109- (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTTAACCAGCCCGGGACCAACAACAACGGCGTGCAGACCGT
CAATCTCACGCCGCAGCAGCCAATTGTGGTCCCGGGCGCGTCCATGGCGC
GCTACCCGCTCGTCACCCGGGGTGGCGCGCTTGTAATGGTCGTCAAGGCG
GCCATGAACAGCCGAGCGGAGAAGGGTCAGCATTGGCTCGACCTAGCCTC
TGCTTCCGCCACCGACGTCGACTCCTTCGACGTGGCCACTCTGGTGCTGG
CCGCACCGGCGCCCTGGCTAGCCAAGCACACGCTGGCCCAGGTGCGCGAG
CTCTACCATGCCGCTTTGCACCCCGAGACGTCCGTGTTCGACCTACCGTC
CAACGCTCCCACCCTGGACGCCGTGGTCGACCACGTGCTCGAGAACGCGG
GCGTCTCGCGGTCGGCGCTGGTGCTGGCCTGCATCTACGTGGACCGACTC
GCCGCCGCCGCCCCGCACATGTTCATCACCGAGAGCAACGTGCAAAGGCT
CTTCGGGGTGGCCTTCATGCTGGCGGCGAAGTGGCTCGAGGACGCCTACT
ACTCGTCCGCCCGCTTCGCCGAGCTGTACTGCATGCCTGTGCAGCAGCTC
AACCAGCTGGAAGCTGCCTTTACCGCCGCCATCGGGTTCGAACTGTTCGT
CTCAACCGAGCAGTTCCGGGACGCCCAACTTGCCCTCATGACGGAGGCCC
TCGACACTCCGTCAAGCCTCAACATCTTCCAAGCCCTTGTGAACGCTAAA
GTCGCCGACGTTCACAAGGCGTTTGACGCAACGAGGACATGGGGCAAGTT
TCCTGATGGCGGCGGTTCGGCGGGCTTTTGGGCGGTGGCGGCGGGTCTGG
CGTGCGATGTCGAGGAGCACGACGAGGAGCATGAGATTGAGTCGCTCGAG
TTCTCCACTCTAGAGCACCATCCATGCGAGGCGAAGGGGAGGAAGGTGGT
CGCTCAGCTGGCACGCGCGCAGCTGCAACACGATTTCCCGCGCGTGCCGG
CTGAATCGTTTGCGACCGAGCTGCAGCGGCGGTTTGCGGAGAATGGCGTC
TTCCGCTACGCCAAGCTGCAGCTCTTGGCGGGAAGCCAGCAGCTGGACGA
CCTGGTCCTGCCCCCGCTGGAGCGCGTCATAAGCCCGCCGGAGCTGCCAC
CCCCGCGCGCCGCTTCTCCCACTCTGGCGGAGCGGGGGAACAGTCCCTGT
GCGCCCGGCGGGCTGAATTCGACGGTGTTGCCCGCACACACCACACGCGC
TCCGGCGGGCGGGTCGTCCATGCCCTGGCCGATGTGGCCGGGTCGCTGCC
TTTCTTCGCGGTATGCGAATATAAATGCGCGGCGGCCCGGCCGAACAACA
GCGGCGCCCGAGCCGCACAACCCGGCGGGCACATGGTCCACCTCACACTT
CACGGACTTTTGTCCTATAAGAAGTTGGTGA
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