Ggra6546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6546.t1
Unique NameGgra6546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:232070..232891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6546Ggra6546Gracilaria gracilis GNS1m malegenetig00000081_pilon 232070..232891 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6546.t1.start1Ggra6546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 232070..232072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6546.t1.CDS1Ggra6546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 232070..232891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6546.t1.exon1Ggra6546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 232070..232891 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6546.t1.stop1Ggra6546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 232889..232891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6546.t1Ggra6546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 232070..232891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6546.t1 ID=Ggra6546.t1|Name=Ggra6546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MFVSQPPPSTKLHGAAPPVVTPEGTAPTSMASTMSVTSLIPLKRRIPQAP
VFITRNAPPTTSFISDASTPPHNTYFFDDDYPSIGASESTAPPEPLRAHQ
STHQPYPTRPSVTGAIRRRISQARRHDERMLPLPHTLSQKFRRASIERDS
VIDDWNRSRKRSSAATSTRFRHPHPRTCSPFVFRSLFTRQNRPTTPQPSV
PFRQPSVQPVQPPLSSTTSRQQQRRQPRAVVQGSPRQPHEEINFMSTLAY
DDFMCGRNRPTKPLRMFARLRRS*
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spliced messenger RNA

>Ggra6546.t1 ID=Ggra6546.t1|Name=Ggra6546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000081_pilon:232070..232891+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTCTCGCAACCGCCGCCATCCACCAAGCTGCATGGCGCCGCCCC
GCCCGTCGTCACTCCCGAGGGTACCGCCCCCACCTCCATGGCGAGCACCA
TGTCCGTCACAAGTTTGATTCCGCTCAAGCGAAGGATTCCGCAGGCTCCC
GTCTTCATCACGCGCAATGCGCCCCCAACCACCTCCTTCATCTCCGATGC
TTCCACGCCGCCGCACAACACCTATTTTTTTGACGATGATTACCCTTCCA
TAGGCGCATCGGAGAGCACTGCCCCGCCGGAGCCGCTCCGAGCCCATCAG
TCTACCCATCAACCCTATCCAACGCGCCCGTCCGTCACTGGCGCCATTCG
TCGCCGAATCTCACAGGCGCGCCGTCACGATGAGCGCATGCTACCACTTC
CACACACGCTGTCACAAAAGTTCAGGCGCGCTTCCATCGAGCGAGATAGC
GTCATTGATGATTGGAATCGTTCGAGAAAACGCTCCTCTGCCGCCACATC
CACCCGCTTTCGACACCCCCACCCGCGTACGTGCAGCCCATTCGTCTTTC
GTTCCTTGTTTACCCGACAAAATCGCCCAACAACACCACAACCGTCTGTT
CCGTTTCGACAACCTTCTGTTCAACCTGTTCAACCGCCTCTCAGTTCTAC
CACATCTCGTCAGCAACAGCGTCGTCAACCGCGGGCTGTTGTGCAGGGTT
CCCCCCGTCAACCACATGAAGAGATTAACTTTATGAGCACGCTTGCATAC
GATGATTTCATGTGTGGCCGCAACCGACCCACAAAACCGCTTCGTATGTT
TGCTCGTCTTCGACGCTCATAA
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protein sequence of Ggra6546.t1

>Ggra6546.t1 ID=Ggra6546.t1|Name=Ggra6546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MFVSQPPPSTKLHGAAPPVVTPEGTAPTSMASTMSVTSLIPLKRRIPQAP
VFITRNAPPTTSFISDASTPPHNTYFFDDDYPSIGASESTAPPEPLRAHQ
STHQPYPTRPSVTGAIRRRISQARRHDERMLPLPHTLSQKFRRASIERDS
VIDDWNRSRKRSSAATSTRFRHPHPRTCSPFVFRSLFTRQNRPTTPQPSV
PFRQPSVQPVQPPLSSTTSRQQQRRQPRAVVQGSPRQPHEEINFMSTLAY
DDFMCGRNRPTKPLRMFARLRRS*
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mRNA from alignment at tig00000081_pilon:232070..232891+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6546.t1 ID=Ggra6546.t1|Name=Ggra6546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000081_pilon:232070..232891+ (Gracilaria gracilis GNS1m male)
ATGTTCGTCTCGCAACCGCCGCCATCCACCAAGCTGCATGGCGCCGCCCC
GCCCGTCGTCACTCCCGAGGGTACCGCCCCCACCTCCATGGCGAGCACCA
TGTCCGTCACAAGTTTGATTCCGCTCAAGCGAAGGATTCCGCAGGCTCCC
GTCTTCATCACGCGCAATGCGCCCCCAACCACCTCCTTCATCTCCGATGC
TTCCACGCCGCCGCACAACACCTATTTTTTTGACGATGATTACCCTTCCA
TAGGCGCATCGGAGAGCACTGCCCCGCCGGAGCCGCTCCGAGCCCATCAG
TCTACCCATCAACCCTATCCAACGCGCCCGTCCGTCACTGGCGCCATTCG
TCGCCGAATCTCACAGGCGCGCCGTCACGATGAGCGCATGCTACCACTTC
CACACACGCTGTCACAAAAGTTCAGGCGCGCTTCCATCGAGCGAGATAGC
GTCATTGATGATTGGAATCGTTCGAGAAAACGCTCCTCTGCCGCCACATC
CACCCGCTTTCGACACCCCCACCCGCGTACGTGCAGCCCATTCGTCTTTC
GTTCCTTGTTTACCCGACAAAATCGCCCAACAACACCACAACCGTCTGTT
CCGTTTCGACAACCTTCTGTTCAACCTGTTCAACCGCCTCTCAGTTCTAC
CACATCTCGTCAGCAACAGCGTCGTCAACCGCGGGCTGTTGTGCAGGGTT
CCCCCCGTCAACCACATGAAGAGATTAACTTTATGAGCACGCTTGCATAC
GATGATTTCATGTGTGGCCGCAACCGACCCACAAAACCGCTTCGTATGTT
TGCTCGTCTTCGACGCTCATAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:232070..232891+

>Ggra6546.t1 ID=Ggra6546.t1|Name=Ggra6546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000081_pilon:232070..232891+ (Gracilaria gracilis GNS1m male)
ATGTTCGTCTCGCAACCGCCGCCATCCACCAAGCTGCATGGCGCCGCCCC
GCCCGTCGTCACTCCCGAGGGTACCGCCCCCACCTCCATGGCGAGCACCA
TGTCCGTCACAAGTTTGATTCCGCTCAAGCGAAGGATTCCGCAGGCTCCC
GTCTTCATCACGCGCAATGCGCCCCCAACCACCTCCTTCATCTCCGATGC
TTCCACGCCGCCGCACAACACCTATTTTTTTGACGATGATTACCCTTCCA
TAGGCGCATCGGAGAGCACTGCCCCGCCGGAGCCGCTCCGAGCCCATCAG
TCTACCCATCAACCCTATCCAACGCGCCCGTCCGTCACTGGCGCCATTCG
TCGCCGAATCTCACAGGCGCGCCGTCACGATGAGCGCATGCTACCACTTC
CACACACGCTGTCACAAAAGTTCAGGCGCGCTTCCATCGAGCGAGATAGC
GTCATTGATGATTGGAATCGTTCGAGAAAACGCTCCTCTGCCGCCACATC
CACCCGCTTTCGACACCCCCACCCGCGTACGTGCAGCCCATTCGTCTTTC
GTTCCTTGTTTACCCGACAAAATCGCCCAACAACACCACAACCGTCTGTT
CCGTTTCGACAACCTTCTGTTCAACCTGTTCAACCGCCTCTCAGTTCTAC
CACATCTCGTCAGCAACAGCGTCGTCAACCGCGGGCTGTTGTGCAGGGTT
CCCCCCGTCAACCACATGAAGAGATTAACTTTATGAGCACGCTTGCATAC
GATGATTTCATGTGTGGCCGCAACCGACCCACAAAACCGCTTCGTATGTT
TGCTCGTCTTCGACGCTCATAA
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