Ggra6538.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6538.t1
Unique NameGgra6538.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:211057..212160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121405.dsmv_2619
Preferred namecorA
PFAMsCorA
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K03284,ko:K16074
KEGG TC1.A.35.1,1.A.35.3,1.A.35.4
Evalue7.11e-22
EggNOG OGsCOG0598@1|root,COG0598@2|Bacteria,1MX09@1224|Proteobacteria,42NS9@68525|delta/epsilon subdivisions,2WJMJ@28221|Deltaproteobacteria,2MK0W@213118|Desulfobacterales
DescriptionCorA-like Mg2 transporter protein
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6538Ggra6538Gracilaria gracilis GNS1m malegenetig00000081_pilon 211057..212160 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6538.t1.stop1Ggra6538.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 211057..211059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6538.t1.CDS1Ggra6538.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 211057..212160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6538.t1.exon1Ggra6538.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 211057..212160 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6538.t1.start1Ggra6538.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 212158..212160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6538.t1Ggra6538.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 211057..212160 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6538.t1 ID=Ggra6538.t1|Name=Ggra6538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MDSTAATPLLLHSRSHSPRLSSSLAASSHCSSPSSSHRSSPPPPPPPPPP
PPAAAASPPGCRAAAASPPECRAAVAYHTAFSQRGVGTTTLVAVAELLAD
PPRPPLWLALDAHFQFALPALLARYQLPLPARAGVCGHVAQPPVLVRLRV
PTQPDAPDYELLAAASDDVLVTCCSSAHELLAAQRRVHAVADALPAVVEA
ACQRLVRAARRNLDQLDALEASAALMVTQPQAVAHSVWKIRRTGAALRRA
HHGVRALIEATERRSHTSPARVYSAQSAELLSSVREGAHSLLEVLLAVQN
NRMQETMQTLAVVTTVFVPLTFLAGIEGMNFRYMPELDGRWSYGAFWMIV
IVLVVLQLAFFRRKGWI*
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spliced messenger RNA

>Ggra6538.t1 ID=Ggra6538.t1|Name=Ggra6538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000081_pilon:211057..212160- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCTACCGCGGCCACCCCCCTGCTGTTGCATTCGCGCTCGCATTC
TCCGCGCCTGTCGTCGTCGCTCGCCGCGAGCTCGCACTGCTCGTCGCCCT
CCTCCTCGCACCGCTCGTCGCCGCCTCCGCCGCCTCCGCCGCCTCCGCCG
CCGCCCGCCGCCGCCGCGTCCCCGCCCGGATGCCGCGCCGCCGCCGCGTC
CCCGCCCGAATGCCGCGCCGCCGTCGCGTACCACACCGCCTTCTCGCAGC
GCGGCGTGGGCACCACCACGCTGGTGGCCGTGGCCGAGCTGCTGGCTGAC
CCGCCGCGCCCGCCGCTGTGGCTGGCGCTGGACGCGCACTTCCAGTTCGC
GCTGCCGGCGCTGCTGGCGCGCTACCAGCTGCCGCTGCCCGCGCGCGCCG
GCGTGTGCGGCCACGTCGCGCAGCCGCCCGTGCTGGTGCGGCTGCGCGTG
CCCACGCAGCCCGACGCACCCGACTACGAGCTGCTGGCCGCCGCCTCCGA
CGACGTGCTCGTCACGTGCTGCTCGTCCGCGCACGAGCTGCTGGCCGCGC
AGCGCCGCGTGCACGCCGTCGCCGACGCGCTGCCCGCCGTGGTGGAGGCC
GCGTGCCAGCGCTTGGTGCGCGCCGCGCGCCGTAACTTGGACCAGCTGGA
CGCGCTGGAGGCCAGCGCAGCGCTCATGGTCACGCAGCCGCAGGCGGTGG
CGCACTCGGTGTGGAAGATTCGGCGCACGGGCGCCGCGCTGCGTCGCGCG
CATCACGGCGTGCGCGCGCTCATCGAGGCGACGGAGCGCCGCTCGCATAC
GTCGCCCGCGCGCGTGTACAGCGCGCAGAGCGCAGAGCTGCTCTCGTCGG
TCAGGGAGGGCGCGCATTCGCTGTTGGAGGTGCTACTGGCCGTGCAGAAC
AACCGCATGCAAGAGACCATGCAGACGCTGGCGGTGGTGACCACCGTGTT
TGTGCCTCTCACCTTTCTGGCGGGCATCGAGGGCATGAACTTTAGGTACA
TGCCGGAGCTTGACGGGCGGTGGAGCTATGGCGCCTTTTGGATGATCGTT
ATTGTGTTGGTTGTTCTGCAGCTGGCGTTCTTCAGGAGGAAGGGCTGGAT
TTAG
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protein sequence of Ggra6538.t1

>Ggra6538.t1 ID=Ggra6538.t1|Name=Ggra6538.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MDSTAATPLLLHSRSHSPRLSSSLAASSHCSSPSSSHRSSPPPPPPPPPP
PPAAAASPPGCRAAAASPPECRAAVAYHTAFSQRGVGTTTLVAVAELLAD
PPRPPLWLALDAHFQFALPALLARYQLPLPARAGVCGHVAQPPVLVRLRV
PTQPDAPDYELLAAASDDVLVTCCSSAHELLAAQRRVHAVADALPAVVEA
ACQRLVRAARRNLDQLDALEASAALMVTQPQAVAHSVWKIRRTGAALRRA
HHGVRALIEATERRSHTSPARVYSAQSAELLSSVREGAHSLLEVLLAVQN
NRMQETMQTLAVVTTVFVPLTFLAGIEGMNFRYMPELDGRWSYGAFWMIV
IVLVVLQLAFFRRKGWI*
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mRNA from alignment at tig00000081_pilon:211057..212160-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6538.t1 ID=Ggra6538.t1|Name=Ggra6538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000081_pilon:211057..212160- (Gracilaria gracilis GNS1m male)
ATGGACTCTACCGCGGCCACCCCCCTGCTGTTGCATTCGCGCTCGCATTC
TCCGCGCCTGTCGTCGTCGCTCGCCGCGAGCTCGCACTGCTCGTCGCCCT
CCTCCTCGCACCGCTCGTCGCCGCCTCCGCCGCCTCCGCCGCCTCCGCCG
CCGCCCGCCGCCGCCGCGTCCCCGCCCGGATGCCGCGCCGCCGCCGCGTC
CCCGCCCGAATGCCGCGCCGCCGTCGCGTACCACACCGCCTTCTCGCAGC
GCGGCGTGGGCACCACCACGCTGGTGGCCGTGGCCGAGCTGCTGGCTGAC
CCGCCGCGCCCGCCGCTGTGGCTGGCGCTGGACGCGCACTTCCAGTTCGC
GCTGCCGGCGCTGCTGGCGCGCTACCAGCTGCCGCTGCCCGCGCGCGCCG
GCGTGTGCGGCCACGTCGCGCAGCCGCCCGTGCTGGTGCGGCTGCGCGTG
CCCACGCAGCCCGACGCACCCGACTACGAGCTGCTGGCCGCCGCCTCCGA
CGACGTGCTCGTCACGTGCTGCTCGTCCGCGCACGAGCTGCTGGCCGCGC
AGCGCCGCGTGCACGCCGTCGCCGACGCGCTGCCCGCCGTGGTGGAGGCC
GCGTGCCAGCGCTTGGTGCGCGCCGCGCGCCGTAACTTGGACCAGCTGGA
CGCGCTGGAGGCCAGCGCAGCGCTCATGGTCACGCAGCCGCAGGCGGTGG
CGCACTCGGTGTGGAAGATTCGGCGCACGGGCGCCGCGCTGCGTCGCGCG
CATCACGGCGTGCGCGCGCTCATCGAGGCGACGGAGCGCCGCTCGCATAC
GTCGCCCGCGCGCGTGTACAGCGCGCAGAGCGCAGAGCTGCTCTCGTCGG
TCAGGGAGGGCGCGCATTCGCTGTTGGAGGTGCTACTGGCCGTGCAGAAC
AACCGCATGCAAGAGACCATGCAGACGCTGGCGGTGGTGACCACCGTGTT
TGTGCCTCTCACCTTTCTGGCGGGCATCGAGGGCATGAACTTTAGGTACA
TGCCGGAGCTTGACGGGCGGTGGAGCTATGGCGCCTTTTGGATGATCGTT
ATTGTGTTGGTTGTTCTGCAGCTGGCGTTCTTCAGGAGGAAGGGCTGGAT
TTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:211057..212160-

>Ggra6538.t1 ID=Ggra6538.t1|Name=Ggra6538.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000081_pilon:211057..212160- (Gracilaria gracilis GNS1m male)
ATGGACTCTACCGCGGCCACCCCCCTGCTGTTGCATTCGCGCTCGCATTC
TCCGCGCCTGTCGTCGTCGCTCGCCGCGAGCTCGCACTGCTCGTCGCCCT
CCTCCTCGCACCGCTCGTCGCCGCCTCCGCCGCCTCCGCCGCCTCCGCCG
CCGCCCGCCGCCGCCGCGTCCCCGCCCGGATGCCGCGCCGCCGCCGCGTC
CCCGCCCGAATGCCGCGCCGCCGTCGCGTACCACACCGCCTTCTCGCAGC
GCGGCGTGGGCACCACCACGCTGGTGGCCGTGGCCGAGCTGCTGGCTGAC
CCGCCGCGCCCGCCGCTGTGGCTGGCGCTGGACGCGCACTTCCAGTTCGC
GCTGCCGGCGCTGCTGGCGCGCTACCAGCTGCCGCTGCCCGCGCGCGCCG
GCGTGTGCGGCCACGTCGCGCAGCCGCCCGTGCTGGTGCGGCTGCGCGTG
CCCACGCAGCCCGACGCACCCGACTACGAGCTGCTGGCCGCCGCCTCCGA
CGACGTGCTCGTCACGTGCTGCTCGTCCGCGCACGAGCTGCTGGCCGCGC
AGCGCCGCGTGCACGCCGTCGCCGACGCGCTGCCCGCCGTGGTGGAGGCC
GCGTGCCAGCGCTTGGTGCGCGCCGCGCGCCGTAACTTGGACCAGCTGGA
CGCGCTGGAGGCCAGCGCAGCGCTCATGGTCACGCAGCCGCAGGCGGTGG
CGCACTCGGTGTGGAAGATTCGGCGCACGGGCGCCGCGCTGCGTCGCGCG
CATCACGGCGTGCGCGCGCTCATCGAGGCGACGGAGCGCCGCTCGCATAC
GTCGCCCGCGCGCGTGTACAGCGCGCAGAGCGCAGAGCTGCTCTCGTCGG
TCAGGGAGGGCGCGCATTCGCTGTTGGAGGTGCTACTGGCCGTGCAGAAC
AACCGCATGCAAGAGACCATGCAGACGCTGGCGGTGGTGACCACCGTGTT
TGTGCCTCTCACCTTTCTGGCGGGCATCGAGGGCATGAACTTTAGGTACA
TGCCGGAGCTTGACGGGCGGTGGAGCTATGGCGCCTTTTGGATGATCGTT
ATTGTGTTGGTTGTTCTGCAGCTGGCGTTCTTCAGGAGGAAGGGCTGGAT
TTAG
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