Ggra6535.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6535.t1
Unique Name	Ggra6535.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	742

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:194353..196578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6535	Ggra6535	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 194353..196578 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6535.t1.start1	Ggra6535.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 194353..194355 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6535.t1.CDS1	Ggra6535.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 194353..196578 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6535.t1.exon1	Ggra6535.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 194353..196578 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6535.t1.stop1	Ggra6535.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 196576..196578 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6535.t1	Ggra6535.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 194353..196578 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:194353..196578+
coding sequence from alignment at tig00000081_pilon:194353..196578+

mRNA sequence

>Ggra6535.t1 ID=Ggra6535.t1|Name=Ggra6535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=742bp
MRSKQKKQSSNDSVLPPDSELPFQLGDLVLCRYSTYPYWPATVDETHQKQ
RSGQHVCMHETRGRQKTLAFWCTFSDEDTGGWVRADRMVLFHPSLLDYVR
VRSNHDWYNSQNAAIIAALRAYKTIHRGSTLPPKPEPPTDMLRKRHPLDQ
LDLLSDDDEPEDNNNDQVHRDNDPMDLGTESSDDERRHRRKSSSSTRGRR
RPTTSAKSPRTPAQTKPMRKKRKSTATPKTATPPPRKRAKSAEHHLEDQL
LHQSESKQVAALKSRIEEMQASLEKLTASLRRKEKALSDLRTSGNVVTFA
PVKQDTVPIETMPQPFTGPLLSSDEFEHRVSAMRQLFEKLDDAAKDVHGK
RQELSAEQEKIRQHYGSLLDGVSDAQGKVVEHQKELAELLRGILVNRVAV
IDLRKHQAGNLIKTMSKRYKDMPNVSAYCNALYRGWKRQVVDYVHNNPGV
KDEERKKDKVPRSEGKENGAVHTPSGSQEDRPKGSDTPKRSKGSDGNGAA
EKDGDSAKDDSAKDGKGNGDVDSDVKSEPKAQDKMEVDSAAKKEGSWKEG
SAKDGSEDSAEKDAKEEQASDRKKMDLDTGPKKAVKKEKDAQAVKDASEE
KKTAPAGNGPDPGQTAAKQPVVAKKKSDEPRSSDKDAKMSEEKEEGSSGK
QDEGNCVEKPTPEAKDDKVEGKAAKAEDKKREGDKKGEHGGGAGAVKEAK
KVVEAKGEGGSKDGAKMDKKDGAAAGETKKAAAAKKEGAKV*

spliced messenger RNA

>Ggra6535.t1 ID=Ggra6535.t1|Name=Ggra6535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2226bp|location=Sequence derived from alignment at tig00000081_pilon:194353..196578+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCAAGCAGAAGAAACAGTCGTCCAACGACTCTGTTCTCCCGCC
CGACTCCGAGCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGTCGCTACT
CCACCTACCCCTACTGGCCCGCCACCGTCGACGAGACCCACCAAAAGCAG
CGCTCCGGCCAGCACGTCTGCATGCACGAGACGCGCGGTCGTCAAAAAAC
CCTCGCCTTTTGGTGTACCTTCTCCGACGAGGACACTGGCGGCTGGGTTC
GTGCCGATCGCATGGTTCTCTTCCACCCCTCGCTACTCGACTATGTGCGT
GTGCGTTCCAATCATGATTGGTATAACAGTCAGAACGCCGCCATCATCGC
TGCTCTTAGGGCGTATAAAACCATCCACCGTGGGTCCACGCTGCCGCCAA
AGCCCGAACCGCCCACCGATATGCTCCGCAAGCGTCACCCGCTTGATCAA
CTCGATCTACTAAGCGATGATGATGAGCCTGAAGATAACAACAATGACCA
GGTTCATCGCGACAACGATCCCATGGACCTTGGCACCGAAAGTTCGGATG
ATGAACGTCGTCATCGCCGCAAGTCTTCCTCCTCAACTCGAGGCCGTCGT
CGCCCCACTACCAGTGCGAAGAGTCCACGCACCCCCGCCCAAACTAAGCC
CATGCGCAAGAAGCGCAAATCTACTGCCACCCCGAAAACTGCCACCCCGC
CCCCCCGCAAACGCGCAAAGTCCGCCGAGCACCATCTAGAGGACCAACTG
CTCCATCAATCAGAGTCCAAACAGGTCGCCGCGCTCAAGAGCAGGATTGA
AGAAATGCAAGCAAGTCTTGAGAAGCTTACTGCAAGCTTGCGTCGTAAGG
AAAAAGCGCTCTCTGATTTACGCACCAGCGGAAACGTCGTCACGTTTGCC
CCCGTCAAGCAGGACACTGTACCCATCGAGACTATGCCGCAGCCATTCAC
TGGCCCGCTGCTTTCGTCAGATGAGTTTGAACACCGAGTTTCTGCCATGA
GGCAGTTGTTCGAAAAGCTGGATGATGCCGCCAAGGACGTGCACGGCAAG
CGCCAAGAGTTGTCTGCAGAGCAGGAGAAAATCCGCCAGCACTACGGCTC
CCTGCTGGACGGCGTGTCTGATGCGCAAGGTAAAGTGGTAGAGCATCAGA
AGGAACTAGCCGAATTACTGCGTGGCATTCTTGTGAATCGAGTGGCCGTC
ATCGACTTGCGCAAACATCAAGCTGGAAACCTCATCAAGACAATGAGCAA
GAGGTACAAGGATATGCCTAACGTATCAGCTTACTGCAACGCGTTGTACC
GTGGGTGGAAGAGGCAAGTTGTGGACTACGTGCACAACAACCCTGGCGTC
AAGGACGAAGAGAGGAAGAAGGACAAAGTACCACGCTCTGAGGGCAAGGA
GAATGGAGCCGTGCATACGCCTTCGGGTTCTCAAGAAGACAGGCCAAAAG
GAAGTGACACCCCTAAGCGCTCCAAGGGCTCAGATGGCAATGGCGCTGCG
GAGAAGGACGGTGACAGTGCCAAGGATGACAGTGCCAAGGATGGGAAGGG
TAACGGTGACGTAGACAGCGATGTCAAGAGCGAACCGAAAGCGCAGGATA
AGATGGAGGTGGACAGCGCTGCCAAGAAGGAAGGTAGCTGGAAGGAAGGT
AGCGCGAAGGACGGCTCTGAAGACTCGGCCGAGAAGGACGCTAAGGAAGA
ACAGGCGTCTGACAGGAAGAAAATGGACCTGGATACGGGGCCGAAGAAAG
CGGTGAAGAAGGAAAAGGACGCTCAAGCTGTGAAGGACGCGAGCGAGGAG
AAGAAGACAGCGCCGGCAGGGAACGGTCCGGACCCGGGGCAGACGGCAGC
AAAGCAACCCGTGGTGGCCAAGAAGAAGAGCGATGAGCCGCGGTCCTCAG
ACAAGGATGCGAAAATGTCTGAGGAGAAGGAGGAGGGATCGTCCGGGAAA
CAAGATGAAGGCAACTGCGTGGAaaagccaacgccagaggccaaggacga
caaggtagaaggaaaagcggccaaggccgaggacaagAAAAGGGAAGGGG
ACAAGAAAGGTGAACACGGAGGCGGCGCTGGCGCTGTCAAGGAGGCAAAG
AAGGTTGTGGAAGCCAAGGGCGAGGGTGGCAGTAAAGACGGCGCCAAGAT
GGATAAGAAGGATGGCGCCGCGGCCGGTGAGACTAAGAAGGCTGCCGCGG
CGAAGAAGGAAGGTGCCAAGGTGTGA

protein sequence of Ggra6535.t1

>Ggra6535.t1 ID=Ggra6535.t1|Name=Ggra6535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=742bp
MRSKQKKQSSNDSVLPPDSELPFQLGDLVLCRYSTYPYWPATVDETHQKQ
RSGQHVCMHETRGRQKTLAFWCTFSDEDTGGWVRADRMVLFHPSLLDYVR
VRSNHDWYNSQNAAIIAALRAYKTIHRGSTLPPKPEPPTDMLRKRHPLDQ
LDLLSDDDEPEDNNNDQVHRDNDPMDLGTESSDDERRHRRKSSSSTRGRR
RPTTSAKSPRTPAQTKPMRKKRKSTATPKTATPPPRKRAKSAEHHLEDQL
LHQSESKQVAALKSRIEEMQASLEKLTASLRRKEKALSDLRTSGNVVTFA
PVKQDTVPIETMPQPFTGPLLSSDEFEHRVSAMRQLFEKLDDAAKDVHGK
RQELSAEQEKIRQHYGSLLDGVSDAQGKVVEHQKELAELLRGILVNRVAV
IDLRKHQAGNLIKTMSKRYKDMPNVSAYCNALYRGWKRQVVDYVHNNPGV
KDEERKKDKVPRSEGKENGAVHTPSGSQEDRPKGSDTPKRSKGSDGNGAA
EKDGDSAKDDSAKDGKGNGDVDSDVKSEPKAQDKMEVDSAAKKEGSWKEG
SAKDGSEDSAEKDAKEEQASDRKKMDLDTGPKKAVKKEKDAQAVKDASEE
KKTAPAGNGPDPGQTAAKQPVVAKKKSDEPRSSDKDAKMSEEKEEGSSGK
QDEGNCVEKPTPEAKDDKVEGKAAKAEDKKREGDKKGEHGGGAGAVKEAK
KVVEAKGEGGSKDGAKMDKKDGAAAGETKKAAAAKKEGAKV*

mRNA from alignment at tig00000081_pilon:194353..196578+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6535.t1 ID=Ggra6535.t1|Name=Ggra6535.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2226bp|location=Sequence derived from alignment at tig00000081_pilon:194353..196578+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCAAGCAGAAGAAACAGTCGTCCAACGACTCTGTTCTCCCGCC
CGACTCCGAGCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGTCGCTACT
CCACCTACCCCTACTGGCCCGCCACCGTCGACGAGACCCACCAAAAGCAG
CGCTCCGGCCAGCACGTCTGCATGCACGAGACGCGCGGTCGTCAAAAAAC
CCTCGCCTTTTGGTGTACCTTCTCCGACGAGGACACTGGCGGCTGGGTTC
GTGCCGATCGCATGGTTCTCTTCCACCCCTCGCTACTCGACTATGTGCGT
GTGCGTTCCAATCATGATTGGTATAACAGTCAGAACGCCGCCATCATCGC
TGCTCTTAGGGCGTATAAAACCATCCACCGTGGGTCCACGCTGCCGCCAA
AGCCCGAACCGCCCACCGATATGCTCCGCAAGCGTCACCCGCTTGATCAA
CTCGATCTACTAAGCGATGATGATGAGCCTGAAGATAACAACAATGACCA
GGTTCATCGCGACAACGATCCCATGGACCTTGGCACCGAAAGTTCGGATG
ATGAACGTCGTCATCGCCGCAAGTCTTCCTCCTCAACTCGAGGCCGTCGT
CGCCCCACTACCAGTGCGAAGAGTCCACGCACCCCCGCCCAAACTAAGCC
CATGCGCAAGAAGCGCAAATCTACTGCCACCCCGAAAACTGCCACCCCGC
CCCCCCGCAAACGCGCAAAGTCCGCCGAGCACCATCTAGAGGACCAACTG
CTCCATCAATCAGAGTCCAAACAGGTCGCCGCGCTCAAGAGCAGGATTGA
AGAAATGCAAGCAAGTCTTGAGAAGCTTACTGCAAGCTTGCGTCGTAAGG
AAAAAGCGCTCTCTGATTTACGCACCAGCGGAAACGTCGTCACGTTTGCC
CCCGTCAAGCAGGACACTGTACCCATCGAGACTATGCCGCAGCCATTCAC
TGGCCCGCTGCTTTCGTCAGATGAGTTTGAACACCGAGTTTCTGCCATGA
GGCAGTTGTTCGAAAAGCTGGATGATGCCGCCAAGGACGTGCACGGCAAG
CGCCAAGAGTTGTCTGCAGAGCAGGAGAAAATCCGCCAGCACTACGGCTC
CCTGCTGGACGGCGTGTCTGATGCGCAAGGTAAAGTGGTAGAGCATCAGA
AGGAACTAGCCGAATTACTGCGTGGCATTCTTGTGAATCGAGTGGCCGTC
ATCGACTTGCGCAAACATCAAGCTGGAAACCTCATCAAGACAATGAGCAA
GAGGTACAAGGATATGCCTAACGTATCAGCTTACTGCAACGCGTTGTACC
GTGGGTGGAAGAGGCAAGTTGTGGACTACGTGCACAACAACCCTGGCGTC
AAGGACGAAGAGAGGAAGAAGGACAAAGTACCACGCTCTGAGGGCAAGGA
GAATGGAGCCGTGCATACGCCTTCGGGTTCTCAAGAAGACAGGCCAAAAG
GAAGTGACACCCCTAAGCGCTCCAAGGGCTCAGATGGCAATGGCGCTGCG
GAGAAGGACGGTGACAGTGCCAAGGATGACAGTGCCAAGGATGGGAAGGG
TAACGGTGACGTAGACAGCGATGTCAAGAGCGAACCGAAAGCGCAGGATA
AGATGGAGGTGGACAGCGCTGCCAAGAAGGAAGGTAGCTGGAAGGAAGGT
AGCGCGAAGGACGGCTCTGAAGACTCGGCCGAGAAGGACGCTAAGGAAGA
ACAGGCGTCTGACAGGAAGAAAATGGACCTGGATACGGGGCCGAAGAAAG
CGGTGAAGAAGGAAAAGGACGCTCAAGCTGTGAAGGACGCGAGCGAGGAG
AAGAAGACAGCGCCGGCAGGGAACGGTCCGGACCCGGGGCAGACGGCAGC
AAAGCAACCCGTGGTGGCCAAGAAGAAGAGCGATGAGCCGCGGTCCTCAG
ACAAGGATGCGAAAATGTCTGAGGAGAAGGAGGAGGGATCGTCCGGGAAA
CAAGATGAAGGCAACTGCGTGGAaaagccaacgccagaggccaaggacga
caaggtagaaggaaaagcggccaaggccgaggacaagAAAAGGGAAGGGG
ACAAGAAAGGTGAACACGGAGGCGGCGCTGGCGCTGTCAAGGAGGCAAAG
AAGGTTGTGGAAGCCAAGGGCGAGGGTGGCAGTAAAGACGGCGCCAAGAT
GGATAAGAAGGATGGCGCCGCGGCCGGTGAGACTAAGAAGGCTGCCGCGG
CGAAGAAGGAAGGTGCCAAGGTGTGA

Coding sequence (CDS) from alignment at tig00000081_pilon:194353..196578+

>Ggra6535.t1 ID=Ggra6535.t1|Name=Ggra6535.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2226bp|location=Sequence derived from alignment at tig00000081_pilon:194353..196578+ (Gracilaria gracilis GNS1m male)
ATGCGTTCCAAGCAGAAGAAACAGTCGTCCAACGACTCTGTTCTCCCGCC
CGACTCCGAGCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGTCGCTACT
CCACCTACCCCTACTGGCCCGCCACCGTCGACGAGACCCACCAAAAGCAG
CGCTCCGGCCAGCACGTCTGCATGCACGAGACGCGCGGTCGTCAAAAAAC
CCTCGCCTTTTGGTGTACCTTCTCCGACGAGGACACTGGCGGCTGGGTTC
GTGCCGATCGCATGGTTCTCTTCCACCCCTCGCTACTCGACTATGTGCGT
GTGCGTTCCAATCATGATTGGTATAACAGTCAGAACGCCGCCATCATCGC
TGCTCTTAGGGCGTATAAAACCATCCACCGTGGGTCCACGCTGCCGCCAA
AGCCCGAACCGCCCACCGATATGCTCCGCAAGCGTCACCCGCTTGATCAA
CTCGATCTACTAAGCGATGATGATGAGCCTGAAGATAACAACAATGACCA
GGTTCATCGCGACAACGATCCCATGGACCTTGGCACCGAAAGTTCGGATG
ATGAACGTCGTCATCGCCGCAAGTCTTCCTCCTCAACTCGAGGCCGTCGT
CGCCCCACTACCAGTGCGAAGAGTCCACGCACCCCCGCCCAAACTAAGCC
CATGCGCAAGAAGCGCAAATCTACTGCCACCCCGAAAACTGCCACCCCGC
CCCCCCGCAAACGCGCAAAGTCCGCCGAGCACCATCTAGAGGACCAACTG
CTCCATCAATCAGAGTCCAAACAGGTCGCCGCGCTCAAGAGCAGGATTGA
AGAAATGCAAGCAAGTCTTGAGAAGCTTACTGCAAGCTTGCGTCGTAAGG
AAAAAGCGCTCTCTGATTTACGCACCAGCGGAAACGTCGTCACGTTTGCC
CCCGTCAAGCAGGACACTGTACCCATCGAGACTATGCCGCAGCCATTCAC
TGGCCCGCTGCTTTCGTCAGATGAGTTTGAACACCGAGTTTCTGCCATGA
GGCAGTTGTTCGAAAAGCTGGATGATGCCGCCAAGGACGTGCACGGCAAG
CGCCAAGAGTTGTCTGCAGAGCAGGAGAAAATCCGCCAGCACTACGGCTC
CCTGCTGGACGGCGTGTCTGATGCGCAAGGTAAAGTGGTAGAGCATCAGA
AGGAACTAGCCGAATTACTGCGTGGCATTCTTGTGAATCGAGTGGCCGTC
ATCGACTTGCGCAAACATCAAGCTGGAAACCTCATCAAGACAATGAGCAA
GAGGTACAAGGATATGCCTAACGTATCAGCTTACTGCAACGCGTTGTACC
GTGGGTGGAAGAGGCAAGTTGTGGACTACGTGCACAACAACCCTGGCGTC
AAGGACGAAGAGAGGAAGAAGGACAAAGTACCACGCTCTGAGGGCAAGGA
GAATGGAGCCGTGCATACGCCTTCGGGTTCTCAAGAAGACAGGCCAAAAG
GAAGTGACACCCCTAAGCGCTCCAAGGGCTCAGATGGCAATGGCGCTGCG
GAGAAGGACGGTGACAGTGCCAAGGATGACAGTGCCAAGGATGGGAAGGG
TAACGGTGACGTAGACAGCGATGTCAAGAGCGAACCGAAAGCGCAGGATA
AGATGGAGGTGGACAGCGCTGCCAAGAAGGAAGGTAGCTGGAAGGAAGGT
AGCGCGAAGGACGGCTCTGAAGACTCGGCCGAGAAGGACGCTAAGGAAGA
ACAGGCGTCTGACAGGAAGAAAATGGACCTGGATACGGGGCCGAAGAAAG
CGGTGAAGAAGGAAAAGGACGCTCAAGCTGTGAAGGACGCGAGCGAGGAG
AAGAAGACAGCGCCGGCAGGGAACGGTCCGGACCCGGGGCAGACGGCAGC
AAAGCAACCCGTGGTGGCCAAGAAGAAGAGCGATGAGCCGCGGTCCTCAG
ACAAGGATGCGAAAATGTCTGAGGAGAAGGAGGAGGGATCGTCCGGGAAA
CAAGATGAAGGCAACTGCGTGGAaaagccaacgccagaggccaaggacga
caaggtagaaggaaaagcggccaaggccgaggacaagAAAAGGGAAGGGG
ACAAGAAAGGTGAACACGGAGGCGGCGCTGGCGCTGTCAAGGAGGCAAAG
AAGGTTGTGGAAGCCAAGGGCGAGGGTGGCAGTAAAGACGGCGCCAAGAT
GGATAAGAAGGATGGCGCCGCGGCCGGTGAGACTAAGAAGGCTGCCGCGG
CGAAGAAGGAAGGTGCCAAGGTGTGA