Ggra6534.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6534.t1
Unique NameGgra6534.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length365
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:181240..182334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1469607.KK073768_gene2075
Preferred namectpB
PFAMsPDZ,PDZ_2,Peptidase_S41
Max annot lvl1117|Cyanobacteria
KEGG koko:K03797
Evalue4.23e-31
EggNOG OGsCOG0793@1|root,COG0793@2|Bacteria,1G031@1117|Cyanobacteria,1HKDU@1161|Nostocales
EC3.4.21.102
DescriptionBelongs to the peptidase S41A family
COG categoryM
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6534Ggra6534Gracilaria gracilis GNS1m malegenetig00000081_pilon 181240..182334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6534.t1.stop1Ggra6534.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 181240..181242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6534.t1.CDS1Ggra6534.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 181240..182334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6534.t1.exon1Ggra6534.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 181240..182334 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6534.t1.start1Ggra6534.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 182332..182334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6534.t1Ggra6534.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 181240..182334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6534.t1 ID=Ggra6534.t1|Name=Ggra6534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=365bp
MKQELDGRACGVGLVLSAERSGWPRARRRLVVKQVVRGSPAARGGVRAGD
AITAIDALDARRLSAAQASARLGGRRGAAVLLRVARGGTELSVLLTRRRV
RQPSVWWRRLEAQRVRAHHGGGGGGSGADVGYVRVREFGAHTADEVRDAL
RALRRDARLALLVLDVRGNCGGLVDKAVETAALFLARRQVVAQFEGGRDA
ARSTELSHGGGGGGGGGGGGGWWWWQRQVGWGEEAAASAAAAAAALVVVL
VDHETASAAELVAGALRDNCRAVIVGRGTFGKRSVQAIVALQNGGGAALT
VGRYRTPRELLRQQCAPVDAAVVRPDVRRRALPDGEGAVAALLQRRTMDA
LRRAQARCVAASGY*
back to top

spliced messenger RNA

>Ggra6534.t1 ID=Ggra6534.t1|Name=Ggra6534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000081_pilon:181240..182334- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGGAGCTGGACGGGCGCGCGTGCGGCGTGGGGCTGGTGCTGAG
CGCGGAGCGCAGCGGGTGGCCGCGCGCGCGGCGGCGGCTGGTGGTGAAGC
AGGTGGTACGCGGCTCGCCCGCTGCGCGCGGCGGCGTGCGCGCCGGCGAC
GCCATCACGGCCATCGACGCGCTGGACGCGCGGCGGCTGAGCGCGGCGCA
GGCCAGCGCGCGGCTGGGCGGGCGGCGCGGCGCCGCCGTGCTGCTGCGCG
TGGCGCGCGGCGGCACGGAGCTGAGCGTGCTGCTGACGCGGCGGCGCGTG
CGGCAGCCGTCCGTATGGTGGCGGCGGCTCGAGGCGCAGCGCGTGCGCGC
ACACCACGGCGGCGGCGGCGGCGGCAGCGGCGCTGACGTGGGGTACGTGC
GCGTGCGCGAGTTTGGCGCGCATACGGCGGATGAGGTGCGCGACGCGCTG
CGCGCGCTGCGGAGAGACGCACGGCTGGCGCTGCTGGTGCTGGACGTGCG
CGGCAACTGCGGCGGGCTGGTGGACAAGGCGGTGGAGACGGCGGCGCTGT
TCCTGGCGCGGCGGCAGGTGGTGGCGCAGTTTGAGGGCGGGCGCGACGCG
GCGCGCAGCACGGAGCTCAGCCACGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGTGGTGGTGGTGGCAGCGGCAGGTGGGGTGGGGCGAGG
AGGCGGCGGCATCGGCGGCGGCAGCGGCGGCGGCGTTGGTGGTGGTGCTG
GTGGACCACGAGACGGCGAGCGCAGCCGAGCTGGTGGCGGGCGCGCTGCG
CGACAACTGCCGCGCGGTCATCGTCGGGCGCGGCACGTTCGGCAAACGCT
CCGTGCAGGCGATCGTGGCGCTGCAAAACGGCGGCGGCGCGGCGCTGACG
GTGGGACGCTACCGCACGCCGCGCGAGCTGCTGCGGCAGCAGTGCGCGCC
GGTTGACGCGGCGGTGGTGCGGCCGGACGTGCGGCGACGCGCGCTGCCGG
ACGGCGAAGGCGCCGTGGCGGCGCTGCTGCAGCGGCGCACGATGGACGCG
CTGCGGCGCGCGCAGGCGCGCTGCGTGGCGGCGAGTGGCTACTAG
back to top

protein sequence of Ggra6534.t1

>Ggra6534.t1 ID=Ggra6534.t1|Name=Ggra6534.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=365bp
MKQELDGRACGVGLVLSAERSGWPRARRRLVVKQVVRGSPAARGGVRAGD
AITAIDALDARRLSAAQASARLGGRRGAAVLLRVARGGTELSVLLTRRRV
RQPSVWWRRLEAQRVRAHHGGGGGGSGADVGYVRVREFGAHTADEVRDAL
RALRRDARLALLVLDVRGNCGGLVDKAVETAALFLARRQVVAQFEGGRDA
ARSTELSHGGGGGGGGGGGGGWWWWQRQVGWGEEAAASAAAAAAALVVVL
VDHETASAAELVAGALRDNCRAVIVGRGTFGKRSVQAIVALQNGGGAALT
VGRYRTPRELLRQQCAPVDAAVVRPDVRRRALPDGEGAVAALLQRRTMDA
LRRAQARCVAASGY*
back to top

mRNA from alignment at tig00000081_pilon:181240..182334-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6534.t1 ID=Ggra6534.t1|Name=Ggra6534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1095bp|location=Sequence derived from alignment at tig00000081_pilon:181240..182334- (Gracilaria gracilis GNS1m male)
ATGAAGCAGGAGCTGGACGGGCGCGCGTGCGGCGTGGGGCTGGTGCTGAG
CGCGGAGCGCAGCGGGTGGCCGCGCGCGCGGCGGCGGCTGGTGGTGAAGC
AGGTGGTACGCGGCTCGCCCGCTGCGCGCGGCGGCGTGCGCGCCGGCGAC
GCCATCACGGCCATCGACGCGCTGGACGCGCGGCGGCTGAGCGCGGCGCA
GGCCAGCGCGCGGCTGGGCGGGCGGCGCGGCGCCGCCGTGCTGCTGCGCG
TGGCGCGCGGCGGCACGGAGCTGAGCGTGCTGCTGACGCGGCGGCGCGTG
CGGCAGCCGTCCGTATGGTGGCGGCGGCTCGAGGCGCAGCGCGTGCGCGC
ACACCACGGCGGCGGCGGCGGCGGCAGCGGCGCTGACGTGGGGTACGTGC
GCGTGCGCGAGTTTGGCGCGCATACGGCGGATGAGGTGCGCGACGCGCTG
CGCGCGCTGCGGAGAGACGCACGGCTGGCGCTGCTGGTGCTGGACGTGCG
CGGCAACTGCGGCGGGCTGGTGGACAAGGCGGTGGAGACGGCGGCGCTGT
TCCTGGCGCGGCGGCAGGTGGTGGCGCAGTTTGAGGGCGGGCGCGACGCG
GCGCGCAGCACGGAGCTCAGCCACGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGTGGTGGTGGTGGCAGCGGCAGGTGGGGTGGGGCGAGG
AGGCGGCGGCATCGGCGGCGGCAGCGGCGGCGGCGTTGGTGGTGGTGCTG
GTGGACCACGAGACGGCGAGCGCAGCCGAGCTGGTGGCGGGCGCGCTGCG
CGACAACTGCCGCGCGGTCATCGTCGGGCGCGGCACGTTCGGCAAACGCT
CCGTGCAGGCGATCGTGGCGCTGCAAAACGGCGGCGGCGCGGCGCTGACG
GTGGGACGCTACCGCACGCCGCGCGAGCTGCTGCGGCAGCAGTGCGCGCC
GGTTGACGCGGCGGTGGTGCGGCCGGACGTGCGGCGACGCGCGCTGCCGG
ACGGCGAAGGCGCCGTGGCGGCGCTGCTGCAGCGGCGCACGATGGACGCG
CTGCGGCGCGCGCAGGCGCGCTGCGTGGCGGCGAGTGGCTACTAG
back to top

Coding sequence (CDS) from alignment at tig00000081_pilon:181240..182334-

>Ggra6534.t1 ID=Ggra6534.t1|Name=Ggra6534.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1095bp|location=Sequence derived from alignment at tig00000081_pilon:181240..182334- (Gracilaria gracilis GNS1m male)
ATGAAGCAGGAGCTGGACGGGCGCGCGTGCGGCGTGGGGCTGGTGCTGAG
CGCGGAGCGCAGCGGGTGGCCGCGCGCGCGGCGGCGGCTGGTGGTGAAGC
AGGTGGTACGCGGCTCGCCCGCTGCGCGCGGCGGCGTGCGCGCCGGCGAC
GCCATCACGGCCATCGACGCGCTGGACGCGCGGCGGCTGAGCGCGGCGCA
GGCCAGCGCGCGGCTGGGCGGGCGGCGCGGCGCCGCCGTGCTGCTGCGCG
TGGCGCGCGGCGGCACGGAGCTGAGCGTGCTGCTGACGCGGCGGCGCGTG
CGGCAGCCGTCCGTATGGTGGCGGCGGCTCGAGGCGCAGCGCGTGCGCGC
ACACCACGGCGGCGGCGGCGGCGGCAGCGGCGCTGACGTGGGGTACGTGC
GCGTGCGCGAGTTTGGCGCGCATACGGCGGATGAGGTGCGCGACGCGCTG
CGCGCGCTGCGGAGAGACGCACGGCTGGCGCTGCTGGTGCTGGACGTGCG
CGGCAACTGCGGCGGGCTGGTGGACAAGGCGGTGGAGACGGCGGCGCTGT
TCCTGGCGCGGCGGCAGGTGGTGGCGCAGTTTGAGGGCGGGCGCGACGCG
GCGCGCAGCACGGAGCTCAGCCACGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGTGGTGGTGGTGGCAGCGGCAGGTGGGGTGGGGCGAGG
AGGCGGCGGCATCGGCGGCGGCAGCGGCGGCGGCGTTGGTGGTGGTGCTG
GTGGACCACGAGACGGCGAGCGCAGCCGAGCTGGTGGCGGGCGCGCTGCG
CGACAACTGCCGCGCGGTCATCGTCGGGCGCGGCACGTTCGGCAAACGCT
CCGTGCAGGCGATCGTGGCGCTGCAAAACGGCGGCGGCGCGGCGCTGACG
GTGGGACGCTACCGCACGCCGCGCGAGCTGCTGCGGCAGCAGTGCGCGCC
GGTTGACGCGGCGGTGGTGCGGCCGGACGTGCGGCGACGCGCGCTGCCGG
ACGGCGAAGGCGCCGTGGCGGCGCTGCTGCAGCGGCGCACGATGGACGCG
CTGCGGCGCGCGCAGGCGCGCTGCGTGGCGGCGAGTGGCTACTAG
back to top