Ggra6532.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6532.t1
Unique NameGgra6532.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:178695..180026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4096.XP_009777763.1
Preferred nameCPK30
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,Pkinase
Max annot lvl35493|Streptophyta
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009931,GO:0009987,GO:0010033,GO:0010152,GO:0010857,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0021700,GO:0023052,GO:0032501,GO:0032502,GO:0032870,GO:0033993,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0071944,GO:0080134,GO:0097305,GO:0097306,GO:0140096,GO:1901564,GO:1901700,GO:1901701,GO:1902584,GO:2000070
Evalue7.34e-23
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,37MAH@33090|Viridiplantae,3GB1K@35493|Streptophyta,44B77@71274|asterids
EC2.7.11.1
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6532Ggra6532Gracilaria gracilis GNS1m malegenetig00000081_pilon 178695..180026 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6532.t1.stop1Ggra6532.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 178695..178697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6532.t1.CDS1Ggra6532.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 178695..180026 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6532.t1.exon1Ggra6532.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 178695..180026 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6532.t1.start1Ggra6532.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 180024..180026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6532.t1Ggra6532.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 178695..180026 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6532.t1 ID=Ggra6532.t1|Name=Ggra6532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MSERNPHNHHHHHHHHQDDNALPQVQVRVRADGDLFFRRAPVTLAVHAAH
AQLGAHTLPYAQLTLAPAPRVRHALLLLLTCARGGGAFCVRAAQPTRDAP
QWAAVLRQLRLRTLSPPGFRYATELGRGSFGVVYAALRERDNHVVAVKHI
RKRLLLARGVPLHVARRELHIASALPPHANIVRTHAAFETDAALFVVMER
VRGASLLAHARALGAAGAVRVTAALLSALAHVHACGLIHRDVKLDNVLMA
RAQPHAVPKLCDFGLAVRHASAAGTNVGTRYAQSPEMLLAPPPRAAPPQP
PYGAAVDVWACGIVLFALLYQRIPWLDRPAEQLRAVRRMAQLARQNKPSI
QLMQTVRERLATPPLLQSLLCALLQPLPHKRLTASAALQHALFAAPHLTN
ALEAPRQIMSARCAFRRVLSLVRAVECFRNSALPAFSQPLVQF*
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spliced messenger RNA

>Ggra6532.t1 ID=Ggra6532.t1|Name=Ggra6532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000081_pilon:178695..180026- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAACGCAACCCCCACAACCACCACCACCACCACCACCACCACCA
AGACGACAACGCGCTGCCGCAGGTGCAGGTGCGCGTGCGCGCCGACGGCG
ACCTGTTCTTCCGCCGCGCGCCCGTGACGCTGGCCGTGCACGCGGCGCAC
GCGCAGTTGGGCGCGCACACGCTGCCGTACGCGCAGCTAACGCTGGCGCC
GGCGCCGCGAGTGCGCCACGCGCTGCTGCTGCTGCTCACATGTGCGCGCG
GCGGCGGCGCGTTCTGCGTGCGCGCCGCGCAGCCGACGCGCGACGCGCCG
CAGTGGGCGGCGGTGCTGCGCCAGCTGCGGCTGCGCACGCTGTCGCCGCC
GGGCTTCCGCTACGCAACCGAGCTGGGGCGCGGCTCGTTCGGCGTGGTGT
ACGCCGCGTTGCGCGAGCGCGACAACCACGTGGTGGCCGTCAAACACATC
CGCAAGCGGCTGCTGCTTGCGCGCGGCGTGCCGCTGCACGTGGCGCGCCG
CGAGCTGCACATTGCGTCGGCGCTGCCGCCGCACGCCAACATTGTGCGCA
CGCACGCCGCCTTCGAGACGGACGCGGCGCTGTTCGTGGTGATGGAGCGC
GTGCGCGGCGCCAGCCTGCTGGCGCACGCGCGCGCGCTGGGCGCGGCGGG
CGCGGTGCGCGTCACGGCGGCGCTGCTGAGCGCGCTGGCGCACGTGCATG
CGTGCGGGCTCATTCACCGCGACGTCAAGCTGGACAACGTGCTCATGGCG
CGCGCACAGCCGCACGCCGTGCCCAAGCTGTGCGACTTTGGGCTGGCCGT
GCGCCACGCCAGCGCCGCCGGCACCAACGTGGGCACCCGCTACGCGCAGT
CGCCCGAGATGCTGCTGGCGCCGCCGCCGCGTGCCGCGCCGCCGCAGCCG
CCGTACGGCGCCGCCGTGGACGTGTGGGCGTGCGGCATCGTGCTGTTCGC
GCTGCTCTACCAGCGCATCCCGTGGCTGGACCGGCCCGCCGAGCAGCTGC
GCGCCGTGCGGCGCATGGCGCAGCTGGCGCGCCAGAACAAGCCCTCCATC
CAGCTCATGCAGACGGTGCGCGAACGGCTGGCCACGCCGCCCTTGCTGCA
GAGCCTGCTGTGCGCGCTGCTGCAGCCGTTGCCGCACAAGAGACTCACCG
CTAGCGCCGCGTTGCAACACGCGCTCTTCGCCGCGCCCCACCTCACCAAC
GCGCTTGAGGCGCCCCGCCAAATCATGTCCGCGCGCTGCGCCTTTCGACG
AGTGTTGTCGCTCGTGCGTGCCGTCGAGTGCTTTCGCAACTCGGCGCTCC
CTGCCTTTTCGCAGCCGCTTGTCCAATTCTAA
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protein sequence of Ggra6532.t1

>Ggra6532.t1 ID=Ggra6532.t1|Name=Ggra6532.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MSERNPHNHHHHHHHHQDDNALPQVQVRVRADGDLFFRRAPVTLAVHAAH
AQLGAHTLPYAQLTLAPAPRVRHALLLLLTCARGGGAFCVRAAQPTRDAP
QWAAVLRQLRLRTLSPPGFRYATELGRGSFGVVYAALRERDNHVVAVKHI
RKRLLLARGVPLHVARRELHIASALPPHANIVRTHAAFETDAALFVVMER
VRGASLLAHARALGAAGAVRVTAALLSALAHVHACGLIHRDVKLDNVLMA
RAQPHAVPKLCDFGLAVRHASAAGTNVGTRYAQSPEMLLAPPPRAAPPQP
PYGAAVDVWACGIVLFALLYQRIPWLDRPAEQLRAVRRMAQLARQNKPSI
QLMQTVRERLATPPLLQSLLCALLQPLPHKRLTASAALQHALFAAPHLTN
ALEAPRQIMSARCAFRRVLSLVRAVECFRNSALPAFSQPLVQF*
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mRNA from alignment at tig00000081_pilon:178695..180026-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6532.t1 ID=Ggra6532.t1|Name=Ggra6532.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000081_pilon:178695..180026- (Gracilaria gracilis GNS1m male)
ATGAGCGAACGCAACCCCCACAACCACCACCACCACCACCACCACCACCA
AGACGACAACGCGCTGCCGCAGGTGCAGGTGCGCGTGCGCGCCGACGGCG
ACCTGTTCTTCCGCCGCGCGCCCGTGACGCTGGCCGTGCACGCGGCGCAC
GCGCAGTTGGGCGCGCACACGCTGCCGTACGCGCAGCTAACGCTGGCGCC
GGCGCCGCGAGTGCGCCACGCGCTGCTGCTGCTGCTCACATGTGCGCGCG
GCGGCGGCGCGTTCTGCGTGCGCGCCGCGCAGCCGACGCGCGACGCGCCG
CAGTGGGCGGCGGTGCTGCGCCAGCTGCGGCTGCGCACGCTGTCGCCGCC
GGGCTTCCGCTACGCAACCGAGCTGGGGCGCGGCTCGTTCGGCGTGGTGT
ACGCCGCGTTGCGCGAGCGCGACAACCACGTGGTGGCCGTCAAACACATC
CGCAAGCGGCTGCTGCTTGCGCGCGGCGTGCCGCTGCACGTGGCGCGCCG
CGAGCTGCACATTGCGTCGGCGCTGCCGCCGCACGCCAACATTGTGCGCA
CGCACGCCGCCTTCGAGACGGACGCGGCGCTGTTCGTGGTGATGGAGCGC
GTGCGCGGCGCCAGCCTGCTGGCGCACGCGCGCGCGCTGGGCGCGGCGGG
CGCGGTGCGCGTCACGGCGGCGCTGCTGAGCGCGCTGGCGCACGTGCATG
CGTGCGGGCTCATTCACCGCGACGTCAAGCTGGACAACGTGCTCATGGCG
CGCGCACAGCCGCACGCCGTGCCCAAGCTGTGCGACTTTGGGCTGGCCGT
GCGCCACGCCAGCGCCGCCGGCACCAACGTGGGCACCCGCTACGCGCAGT
CGCCCGAGATGCTGCTGGCGCCGCCGCCGCGTGCCGCGCCGCCGCAGCCG
CCGTACGGCGCCGCCGTGGACGTGTGGGCGTGCGGCATCGTGCTGTTCGC
GCTGCTCTACCAGCGCATCCCGTGGCTGGACCGGCCCGCCGAGCAGCTGC
GCGCCGTGCGGCGCATGGCGCAGCTGGCGCGCCAGAACAAGCCCTCCATC
CAGCTCATGCAGACGGTGCGCGAACGGCTGGCCACGCCGCCCTTGCTGCA
GAGCCTGCTGTGCGCGCTGCTGCAGCCGTTGCCGCACAAGAGACTCACCG
CTAGCGCCGCGTTGCAACACGCGCTCTTCGCCGCGCCCCACCTCACCAAC
GCGCTTGAGGCGCCCCGCCAAATCATGTCCGCGCGCTGCGCCTTTCGACG
AGTGTTGTCGCTCGTGCGTGCCGTCGAGTGCTTTCGCAACTCGGCGCTCC
CTGCCTTTTCGCAGCCGCTTGTCCAATTCTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:178695..180026-

>Ggra6532.t1 ID=Ggra6532.t1|Name=Ggra6532.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000081_pilon:178695..180026- (Gracilaria gracilis GNS1m male)
ATGAGCGAACGCAACCCCCACAACCACCACCACCACCACCACCACCACCA
AGACGACAACGCGCTGCCGCAGGTGCAGGTGCGCGTGCGCGCCGACGGCG
ACCTGTTCTTCCGCCGCGCGCCCGTGACGCTGGCCGTGCACGCGGCGCAC
GCGCAGTTGGGCGCGCACACGCTGCCGTACGCGCAGCTAACGCTGGCGCC
GGCGCCGCGAGTGCGCCACGCGCTGCTGCTGCTGCTCACATGTGCGCGCG
GCGGCGGCGCGTTCTGCGTGCGCGCCGCGCAGCCGACGCGCGACGCGCCG
CAGTGGGCGGCGGTGCTGCGCCAGCTGCGGCTGCGCACGCTGTCGCCGCC
GGGCTTCCGCTACGCAACCGAGCTGGGGCGCGGCTCGTTCGGCGTGGTGT
ACGCCGCGTTGCGCGAGCGCGACAACCACGTGGTGGCCGTCAAACACATC
CGCAAGCGGCTGCTGCTTGCGCGCGGCGTGCCGCTGCACGTGGCGCGCCG
CGAGCTGCACATTGCGTCGGCGCTGCCGCCGCACGCCAACATTGTGCGCA
CGCACGCCGCCTTCGAGACGGACGCGGCGCTGTTCGTGGTGATGGAGCGC
GTGCGCGGCGCCAGCCTGCTGGCGCACGCGCGCGCGCTGGGCGCGGCGGG
CGCGGTGCGCGTCACGGCGGCGCTGCTGAGCGCGCTGGCGCACGTGCATG
CGTGCGGGCTCATTCACCGCGACGTCAAGCTGGACAACGTGCTCATGGCG
CGCGCACAGCCGCACGCCGTGCCCAAGCTGTGCGACTTTGGGCTGGCCGT
GCGCCACGCCAGCGCCGCCGGCACCAACGTGGGCACCCGCTACGCGCAGT
CGCCCGAGATGCTGCTGGCGCCGCCGCCGCGTGCCGCGCCGCCGCAGCCG
CCGTACGGCGCCGCCGTGGACGTGTGGGCGTGCGGCATCGTGCTGTTCGC
GCTGCTCTACCAGCGCATCCCGTGGCTGGACCGGCCCGCCGAGCAGCTGC
GCGCCGTGCGGCGCATGGCGCAGCTGGCGCGCCAGAACAAGCCCTCCATC
CAGCTCATGCAGACGGTGCGCGAACGGCTGGCCACGCCGCCCTTGCTGCA
GAGCCTGCTGTGCGCGCTGCTGCAGCCGTTGCCGCACAAGAGACTCACCG
CTAGCGCCGCGTTGCAACACGCGCTCTTCGCCGCGCCCCACCTCACCAAC
GCGCTTGAGGCGCCCCGCCAAATCATGTCCGCGCGCTGCGCCTTTCGACG
AGTGTTGTCGCTCGTGCGTGCCGTCGAGTGCTTTCGCAACTCGGCGCTCC
CTGCCTTTTCGCAGCCGCTTGTCCAATTCTAA
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