Ggra6526.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6526.t2
Unique Name	Ggra6526.t2
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	734

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:48081..50282 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704626.1
PFAMs	HECT,RCC1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10587,ko:K10614,ko:K10615
KEGG Pathway	ko04120,ko05165,ko05203,map04120,map05165,map05203
Evalue	8.34e-126
EggNOG OGs	COG5021@1\|root,KOG0941@2759\|Eukaryota
EC	2.3.2.26
Description	ubiquitin-protein transferase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6526	Ggra6526	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 48081..51506 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6526.t2.stop1	Ggra6526.t2.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 48081..48083 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6526.t2.CDS1	Ggra6526.t2.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 48081..50282 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6526.t2.exon1	Ggra6526.t2.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 48081..50282 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6526.t2.start1	Ggra6526.t2.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 50280..50282 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6526.t2	Ggra6526.t2	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 48081..50282 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:48081..50282-
coding sequence from alignment at tig00000081_pilon:48081..50282-

mRNA sequence

>Ggra6526.t2 ID=Ggra6526.t2|Name=Ggra6526.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp
MLQARAGLSRFGTASVLLHTFVKRPIKPLANGKVDYLAAESAHLRFAKMF
GEEGRGVLVQAAARLRHDAQIGFGIVEETERGSVLAGDLRFEQPHITPKA
LFYKDDDYFRQSVANSYECGYLFFLAFMNPIYADKSRVPDLSELAAILLR
CEEDGREAFLEMVSYCDEQVLLTRIVRPLQGVLTSELTGYRRITRNAIFA
TKALALCYHAVYRASRRKNMRGLFIPRREFYNETVSELVDLGEDYERWCA
NQNHLDNIGQNGLLGNGEHAFNEDSSAKFFDLPPLPIAGQDDGPFSFCSY
SFLLTEAAKFRILELESQMTMNKESMRSVLSFGVLPMPIGPWGRISHMRV
PEGEMGHLRYLVLYVKRDNIVSDAFVQIADLVKRHPRELHKPLRVKFEGE
EGVDEGGLRKEFYQVLVEHILSPKYGMFEFVEEANCHWFRKDFLESEHSW
TLIGIIFGLAAFNSILLSVQFAPVFYRKLAVGFRNNLLRMRLKDDSHFEQ
LEYRTDLNDVIETFPAVGRSLKHLREYEGDDVEDVFALRFEISYENLFGN
EVAVELKDNGASIPVTNKNREEFIGLYVDYLINKSIKTAFNNFAAGFSLM
MNGPCLPMFTAEEIETLVCGEEKLDFAALRNSARYEGYDEKSTTVINLWQ
VLDEYDLALKKLFLLFVTGSDRAPIGGLGNLMIVVQRAGSDTNRLPTSYT
CFNTMLLPDYSSRAKLRDRLSTAIRNSKGFGLM*

spliced messenger RNA

>Ggra6526.t2 ID=Ggra6526.t2|Name=Ggra6526.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000081_pilon:48081..50282- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGGCTCGTGCGGGTCTATCTCGGTTTGGAACAGCGTCCGTTTT
GCTACATACTTTTGTCAAGCGCCCAATTAAACCTTTGGCTAACGGAAAGG
TTGACTACTTGGCCGCGGAAAGTGCACATTTGCGATTCGCGAAGATGTTT
GGCGAGGAAGGTAGAGGAGTTCTGGTTCAGGCAGCTGCACGCCTCCGACA
TGATGCGCAGATAGGGTTTGGAATCGTGGAAGAGACTGAGCGTGGCTCCG
TTCTGGCTGGTGATTTGCGTTTTGAACAACCTCATATAACGCCGAAGGCT
CTATTCTACAAGGATGATGACTATTTTCGGCAATCGGTAGCTAACAGCTA
CGAATGCGGTTATCTCTTCTTCTTAGCCTTTATGAACCCAATTTATGCTG
ACAAGAGTCGTGTACCAGATCTGTCGGAGCTAGCCGCTATTTTGCTAAGG
TGCGAAGAAGATGGGAGAGAGGCCTTTCTGGAAATGGTATCCTACTGTGA
TGAACAAGTCCTGCTGACTCGGATCGTTCGACCCTTGCAAGGCGTTTTAA
CGTCGGAACTGACAGGGTATAGGCGCATCACAAGAAACGCAATCTTTGCT
ACAAAGGCGCTTGCTCTTTGTTACCACGCCGTTTACCGAGCTTCAAGGCG
AAAGAATATGAGGGGATTGTTCATCCCTCGACGAGAATTCTACAACGAAA
CAGTCAGCGAGCTTGTGGATCTTGGTGAGGATTACGAGCGATGGTGTGCC
AACCAGAACCATTTGGACAACATAGGTCAAAACGGTCTACTAGGTAACGG
TGAGCATGCATTTAATGAAGACTCATCAGCCAAGTTCTTTGATCTCCCTC
CACTGCCCATCGCTGGACAAGATGATGGTCCGTTCTCCTTTTGTTCCTAC
AGCTTCCTCCTCACAGAGGCCGCGAAGTTTAGAATTCTTGAGCTAGAGTC
GCAGATGACTATGAACAAAGAAAGTATGCGTTCTGTACTATCATTTGGTG
TGTTACCAATGCCTATCGGCCCATGGGGTCGCATCTCTCATATGCGAGTA
CCAGAAGGGGAGATGGGTCATTTGCGGTACTTGGTGTTATATGTGAAAAG
AGATAACATCGTATCAGATGCGTTTGTGCAAATCGCAGATCTTGTGAAAA
GGCACCCACGGGAGCTCCACAAGCCACTGCGAGTGAAGTTTGAAGGGGAA
GAAGGAGTGGATGAAGGAGGTTTGCGGAAAGAGTTCTACCAAGTATTGGT
GGAACATATCTTATCACCAAAGTACGGAATGTTTGAGTTTGTAGAGGAGG
CTAACTGTCACTGGTTCCGAAAAGACTTTCTTGAGAGCGAGCATTCATGG
ACCCTGATTGGGATCATCTTCGGACTAGCCGCGTTTAACTCTATCTTACT
TAGTGTTCAGTTTGCTCCTGTGTTTTATCGGAAGCTAGCTGTGGGCTTCA
GAAACAACTTACTGCGTATGCGACTGAAAGATGACTCGCATTTTGAACAA
TTGGAGTACAGAACAGACTTGAATGACGTGATCGAAACGTTCCCGGCAGT
TGGGAGGAGCCTGAAGCATCTGAGGGAGTATGAAGGAGATGACGTAGAAG
ATGTATTTGCACTGAGATTTGAAATTTCGTACGAGAACCTTTTCGGCAAC
GAAGTGGCTGTGGAACTGAAGGATAACGGGGCCAGTATTCCAGTAACTAA
CAAAAACAGAGAGGAGTTTATTGGGTTGTACGTGGACTACTTGATCAATA
AGTCCATCAAGACGGCGTTTAACAACTTTGCGGCGGGATTTTCATTGATG
ATGAACGGTCCTTGCCTGCCAATGTTCACAGCGGAAGAAATAGAAACGCT
AGTATGCGGGGAAGAGAAGCTGGATTTCGCAGCATTACGAAACTCGGCGC
GGTACGAAGGGTACGATGAGAAGTCGACAACCGTGATCAACCTGTGGCAG
GTATTGGACGAGTACGACTTGGCATTGAAGAAACTGTTTCTGCTATTTGT
TACGGGGAGTGATCGTGCACCAATTGGGGGTCTGGGGAATTTGATGATCG
TTGTGCAACGAGCTGGGTCCGATACGAACCGTTTGCCGACGAGCTACACT
TGCTTTAATACAATGCTGCTGCCGGACTATAGCAGCCGGGCAAAACTTAG
AGATCGACTTTCGACGGCGATTCGGAATTCAAAGGGTTTCGGATTGATGT
AG

protein sequence of Ggra6526.t2

>Ggra6526.t2 ID=Ggra6526.t2|Name=Ggra6526.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=734bp
MLQARAGLSRFGTASVLLHTFVKRPIKPLANGKVDYLAAESAHLRFAKMF
GEEGRGVLVQAAARLRHDAQIGFGIVEETERGSVLAGDLRFEQPHITPKA
LFYKDDDYFRQSVANSYECGYLFFLAFMNPIYADKSRVPDLSELAAILLR
CEEDGREAFLEMVSYCDEQVLLTRIVRPLQGVLTSELTGYRRITRNAIFA
TKALALCYHAVYRASRRKNMRGLFIPRREFYNETVSELVDLGEDYERWCA
NQNHLDNIGQNGLLGNGEHAFNEDSSAKFFDLPPLPIAGQDDGPFSFCSY
SFLLTEAAKFRILELESQMTMNKESMRSVLSFGVLPMPIGPWGRISHMRV
PEGEMGHLRYLVLYVKRDNIVSDAFVQIADLVKRHPRELHKPLRVKFEGE
EGVDEGGLRKEFYQVLVEHILSPKYGMFEFVEEANCHWFRKDFLESEHSW
TLIGIIFGLAAFNSILLSVQFAPVFYRKLAVGFRNNLLRMRLKDDSHFEQ
LEYRTDLNDVIETFPAVGRSLKHLREYEGDDVEDVFALRFEISYENLFGN
EVAVELKDNGASIPVTNKNREEFIGLYVDYLINKSIKTAFNNFAAGFSLM
MNGPCLPMFTAEEIETLVCGEEKLDFAALRNSARYEGYDEKSTTVINLWQ
VLDEYDLALKKLFLLFVTGSDRAPIGGLGNLMIVVQRAGSDTNRLPTSYT
CFNTMLLPDYSSRAKLRDRLSTAIRNSKGFGLM*

mRNA from alignment at tig00000081_pilon:48081..50282-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6526.t2 ID=Ggra6526.t2|Name=Ggra6526.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000081_pilon:48081..50282- (Gracilaria gracilis GNS1m male)
ATGCTGCAGGCTCGTGCGGGTCTATCTCGGTTTGGAACAGCGTCCGTTTT
GCTACATACTTTTGTCAAGCGCCCAATTAAACCTTTGGCTAACGGAAAGG
TTGACTACTTGGCCGCGGAAAGTGCACATTTGCGATTCGCGAAGATGTTT
GGCGAGGAAGGTAGAGGAGTTCTGGTTCAGGCAGCTGCACGCCTCCGACA
TGATGCGCAGATAGGGTTTGGAATCGTGGAAGAGACTGAGCGTGGCTCCG
TTCTGGCTGGTGATTTGCGTTTTGAACAACCTCATATAACGCCGAAGGCT
CTATTCTACAAGGATGATGACTATTTTCGGCAATCGGTAGCTAACAGCTA
CGAATGCGGTTATCTCTTCTTCTTAGCCTTTATGAACCCAATTTATGCTG
ACAAGAGTCGTGTACCAGATCTGTCGGAGCTAGCCGCTATTTTGCTAAGG
TGCGAAGAAGATGGGAGAGAGGCCTTTCTGGAAATGGTATCCTACTGTGA
TGAACAAGTCCTGCTGACTCGGATCGTTCGACCCTTGCAAGGCGTTTTAA
CGTCGGAACTGACAGGGTATAGGCGCATCACAAGAAACGCAATCTTTGCT
ACAAAGGCGCTTGCTCTTTGTTACCACGCCGTTTACCGAGCTTCAAGGCG
AAAGAATATGAGGGGATTGTTCATCCCTCGACGAGAATTCTACAACGAAA
CAGTCAGCGAGCTTGTGGATCTTGGTGAGGATTACGAGCGATGGTGTGCC
AACCAGAACCATTTGGACAACATAGGTCAAAACGGTCTACTAGGTAACGG
TGAGCATGCATTTAATGAAGACTCATCAGCCAAGTTCTTTGATCTCCCTC
CACTGCCCATCGCTGGACAAGATGATGGTCCGTTCTCCTTTTGTTCCTAC
AGCTTCCTCCTCACAGAGGCCGCGAAGTTTAGAATTCTTGAGCTAGAGTC
GCAGATGACTATGAACAAAGAAAGTATGCGTTCTGTACTATCATTTGGTG
TGTTACCAATGCCTATCGGCCCATGGGGTCGCATCTCTCATATGCGAGTA
CCAGAAGGGGAGATGGGTCATTTGCGGTACTTGGTGTTATATGTGAAAAG
AGATAACATCGTATCAGATGCGTTTGTGCAAATCGCAGATCTTGTGAAAA
GGCACCCACGGGAGCTCCACAAGCCACTGCGAGTGAAGTTTGAAGGGGAA
GAAGGAGTGGATGAAGGAGGTTTGCGGAAAGAGTTCTACCAAGTATTGGT
GGAACATATCTTATCACCAAAGTACGGAATGTTTGAGTTTGTAGAGGAGG
CTAACTGTCACTGGTTCCGAAAAGACTTTCTTGAGAGCGAGCATTCATGG
ACCCTGATTGGGATCATCTTCGGACTAGCCGCGTTTAACTCTATCTTACT
TAGTGTTCAGTTTGCTCCTGTGTTTTATCGGAAGCTAGCTGTGGGCTTCA
GAAACAACTTACTGCGTATGCGACTGAAAGATGACTCGCATTTTGAACAA
TTGGAGTACAGAACAGACTTGAATGACGTGATCGAAACGTTCCCGGCAGT
TGGGAGGAGCCTGAAGCATCTGAGGGAGTATGAAGGAGATGACGTAGAAG
ATGTATTTGCACTGAGATTTGAAATTTCGTACGAGAACCTTTTCGGCAAC
GAAGTGGCTGTGGAACTGAAGGATAACGGGGCCAGTATTCCAGTAACTAA
CAAAAACAGAGAGGAGTTTATTGGGTTGTACGTGGACTACTTGATCAATA
AGTCCATCAAGACGGCGTTTAACAACTTTGCGGCGGGATTTTCATTGATG
ATGAACGGTCCTTGCCTGCCAATGTTCACAGCGGAAGAAATAGAAACGCT
AGTATGCGGGGAAGAGAAGCTGGATTTCGCAGCATTACGAAACTCGGCGC
GGTACGAAGGGTACGATGAGAAGTCGACAACCGTGATCAACCTGTGGCAG
GTATTGGACGAGTACGACTTGGCATTGAAGAAACTGTTTCTGCTATTTGT
TACGGGGAGTGATCGTGCACCAATTGGGGGTCTGGGGAATTTGATGATCG
TTGTGCAACGAGCTGGGTCCGATACGAACCGTTTGCCGACGAGCTACACT
TGCTTTAATACAATGCTGCTGCCGGACTATAGCAGCCGGGCAAAACTTAG
AGATCGACTTTCGACGGCGATTCGGAATTCAAAGGGTTTCGGATTGATGT
AG

Coding sequence (CDS) from alignment at tig00000081_pilon:48081..50282-

>Ggra6526.t2 ID=Ggra6526.t2|Name=Ggra6526.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00000081_pilon:48081..50282- (Gracilaria gracilis GNS1m male)
ATGCTGCAGGCTCGTGCGGGTCTATCTCGGTTTGGAACAGCGTCCGTTTT
GCTACATACTTTTGTCAAGCGCCCAATTAAACCTTTGGCTAACGGAAAGG
TTGACTACTTGGCCGCGGAAAGTGCACATTTGCGATTCGCGAAGATGTTT
GGCGAGGAAGGTAGAGGAGTTCTGGTTCAGGCAGCTGCACGCCTCCGACA
TGATGCGCAGATAGGGTTTGGAATCGTGGAAGAGACTGAGCGTGGCTCCG
TTCTGGCTGGTGATTTGCGTTTTGAACAACCTCATATAACGCCGAAGGCT
CTATTCTACAAGGATGATGACTATTTTCGGCAATCGGTAGCTAACAGCTA
CGAATGCGGTTATCTCTTCTTCTTAGCCTTTATGAACCCAATTTATGCTG
ACAAGAGTCGTGTACCAGATCTGTCGGAGCTAGCCGCTATTTTGCTAAGG
TGCGAAGAAGATGGGAGAGAGGCCTTTCTGGAAATGGTATCCTACTGTGA
TGAACAAGTCCTGCTGACTCGGATCGTTCGACCCTTGCAAGGCGTTTTAA
CGTCGGAACTGACAGGGTATAGGCGCATCACAAGAAACGCAATCTTTGCT
ACAAAGGCGCTTGCTCTTTGTTACCACGCCGTTTACCGAGCTTCAAGGCG
AAAGAATATGAGGGGATTGTTCATCCCTCGACGAGAATTCTACAACGAAA
CAGTCAGCGAGCTTGTGGATCTTGGTGAGGATTACGAGCGATGGTGTGCC
AACCAGAACCATTTGGACAACATAGGTCAAAACGGTCTACTAGGTAACGG
TGAGCATGCATTTAATGAAGACTCATCAGCCAAGTTCTTTGATCTCCCTC
CACTGCCCATCGCTGGACAAGATGATGGTCCGTTCTCCTTTTGTTCCTAC
AGCTTCCTCCTCACAGAGGCCGCGAAGTTTAGAATTCTTGAGCTAGAGTC
GCAGATGACTATGAACAAAGAAAGTATGCGTTCTGTACTATCATTTGGTG
TGTTACCAATGCCTATCGGCCCATGGGGTCGCATCTCTCATATGCGAGTA
CCAGAAGGGGAGATGGGTCATTTGCGGTACTTGGTGTTATATGTGAAAAG
AGATAACATCGTATCAGATGCGTTTGTGCAAATCGCAGATCTTGTGAAAA
GGCACCCACGGGAGCTCCACAAGCCACTGCGAGTGAAGTTTGAAGGGGAA
GAAGGAGTGGATGAAGGAGGTTTGCGGAAAGAGTTCTACCAAGTATTGGT
GGAACATATCTTATCACCAAAGTACGGAATGTTTGAGTTTGTAGAGGAGG
CTAACTGTCACTGGTTCCGAAAAGACTTTCTTGAGAGCGAGCATTCATGG
ACCCTGATTGGGATCATCTTCGGACTAGCCGCGTTTAACTCTATCTTACT
TAGTGTTCAGTTTGCTCCTGTGTTTTATCGGAAGCTAGCTGTGGGCTTCA
GAAACAACTTACTGCGTATGCGACTGAAAGATGACTCGCATTTTGAACAA
TTGGAGTACAGAACAGACTTGAATGACGTGATCGAAACGTTCCCGGCAGT
TGGGAGGAGCCTGAAGCATCTGAGGGAGTATGAAGGAGATGACGTAGAAG
ATGTATTTGCACTGAGATTTGAAATTTCGTACGAGAACCTTTTCGGCAAC
GAAGTGGCTGTGGAACTGAAGGATAACGGGGCCAGTATTCCAGTAACTAA
CAAAAACAGAGAGGAGTTTATTGGGTTGTACGTGGACTACTTGATCAATA
AGTCCATCAAGACGGCGTTTAACAACTTTGCGGCGGGATTTTCATTGATG
ATGAACGGTCCTTGCCTGCCAATGTTCACAGCGGAAGAAATAGAAACGCT
AGTATGCGGGGAAGAGAAGCTGGATTTCGCAGCATTACGAAACTCGGCGC
GGTACGAAGGGTACGATGAGAAGTCGACAACCGTGATCAACCTGTGGCAG
GTATTGGACGAGTACGACTTGGCATTGAAGAAACTGTTTCTGCTATTTGT
TACGGGGAGTGATCGTGCACCAATTGGGGGTCTGGGGAATTTGATGATCG
TTGTGCAACGAGCTGGGTCCGATACGAACCGTTTGCCGACGAGCTACACT
TGCTTTAATACAATGCTGCTGCCGGACTATAGCAGCCGGGCAAAACTTAG
AGATCGACTTTCGACGGCGATTCGGAATTCAAAGGGTTTCGGATTGATGT
AG