Ggra6525.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6525.t1
Unique NameGgra6525.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:43249..44532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703748.1
Preferred nameNCBP1
PFAMsMIF4G,MIF4G_like,MIF4G_like_2
Max annot lvl2759|Eukaryota
KEGG koko:K12882,ko:K13288
KEGG Pathwayko03008,ko03013,ko03015,ko03040,map03008,map03013,map03015,map03040
KEGG ModuleM00399
GOsGO:0000184,GO:0000243,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001558,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009628,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030307,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032774,GO:0032991,GO:0033036,GO:0033120,GO:0034248,GO:0034470,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040008,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043484,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048026,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051098,GO:0051099,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Evalue2.91e-51
EggNOG OGsKOG1104@1|root,KOG1104@2759|Eukaryota
Descriptionprimary miRNA processing
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6525Ggra6525Gracilaria gracilis GNS1m malegenetig00000081_pilon 43249..44532 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6525.t1.start1Ggra6525.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 43249..43251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6525.t1.CDS1Ggra6525.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 43249..44532 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6525.t1.exon1Ggra6525.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 43249..44532 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6525.t1.stop1Ggra6525.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 44530..44532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6525.t1Ggra6525.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 43249..44532 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6525.t1 ID=Ggra6525.t1|Name=Ggra6525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MFQEAGDMDPESFDRLTEWFSFHLSNFGYKWNWSDWALYADAEMVDKFPY
RAMFCKDVLRRCIRLSYYERIIGIVPQEMSFFFPPKPGNGDRSRFNPEIN
DELMKIVTGKGKQDAPSVKRRLEELIPLREMEVDEGDKSSMEAEVNLARL
AALIRAILQAGCRTLSHFDIVSERYEGILREMSVKGGSLAKRLVTLEVVT
FWKDVHIRKMYVLDKLCARSVIDGQAIIDSCLAFERVSEKPGQTERISNK
DIEANLNDSGCWELIRLVMFRALSREEAARGELQLVSQKAASANEGETEN
VGVLLQGAKRKVEMAKKEVAELILVAQRRLFGIFSRLLMVNKTDTDDIVM
GQGGERELPGFSGKPIWYWRCSGMMRELARKHARHLSIIIDQLDNDTRDN
RDQHRVLWESFETIKEIEASDMLSRVF*
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spliced messenger RNA

>Ggra6525.t1 ID=Ggra6525.t1|Name=Ggra6525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:43249..44532+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAGGAAGCTGGCGACATGGACCCGGAATCTTTCGATCGATTGAC
GGAATGGTTTTCATTCCATCTTAGCAACTTCGGGTATAAGTGGAACTGGT
CGGACTGGGCTCTGTATGCTGATGCGGAAATGGTGGATAAATTCCCGTAC
AGAGCGATGTTCTGCAAGGATGTTTTACGTCGATGTATTCGTCTATCGTA
TTACGAAAGAATCATTGGAATTGTACCACAAGAGATGAGCTTCTTCTTTC
CGCCTAAACCAGGAAATGGTGATAGATCGCGATTCAATCCAGAAATCAAT
GATGAGTTAATGAAAATTGTCACTGGTAAGGGGAAACAGGATGCTCCGTC
TGTGAAACGTAGATTAGAAGAGCTCATTCCATTGAGGGAGATGGAAGTTG
ACGAAGGAGACAAAAGCAGTATGGAAGCGGAAGTGAACCTTGCCCGCCTT
GCAGCCCTGATAAGAGCCATCCTTCAAGCTGGGTGTAGAACGCTCTCTCA
TTTCGACATCGTATCCGAGAGATATGAGGGCATTTTACGCGAAATGTCAG
TGAAGGGTGGTTCTCTTGCGAAGCGCCTAGTTACTCTGGAGGTAGTAACT
TTCTGGAAGGACGTTCACATCCGCAAAATGTATGTTCTGGACAAATTGTG
TGCCCGTTCTGTAATCGACGGGCAGGCTATAATAGACTCATGTCTCGCAT
TCGAGAGAGTAAGTGAGAAACCGGGGCAAACGGAGCGCATCAGTAACAAG
GATATTGAAGCGAACCTTAACGACTCTGGCTGTTGGGAGCTTATACGCCT
TGTAATGTTTAGAGCATTGTCAAGAGAGGAAGCAGCGCGAGGCGAACTTC
AACTTGTGTCGCAAAAAGCTGCATCTGCGAATGAGGGAGAAACGGAAAAT
GTGGGAGTACTTCTTCAAGGAGCTAAACGAAAAGTAGAAATGGCGAAGAA
GGAAGTCGCAGAGCTGATTTTAGTTGCCCAGAGACGGTTGTTTGGAATAT
TTTCCAGGCTCCTGATGGTCAACAAAACTGACACAGATGACATTGTGATG
GGCCAAGGAGGGGAAAGAGAACTTCCCGGTTTCAGTGGCAAACCAATCTG
GTACTGGAGGTGTTCTGGTATGATGCGAGAGTTGGCAAGGAAGCACGCCC
GGCATCTGTCAATCATCATTGACCAACTTGATAACGACACACGAGACAAT
CGGGATCAGCACCGGGTTCTGTGGGAGTCGTTTGAAACTATCAAGGAGAT
TGAAGCAAGCGATATGCTGAGTAGGGTATTTTAG
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protein sequence of Ggra6525.t1

>Ggra6525.t1 ID=Ggra6525.t1|Name=Ggra6525.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MFQEAGDMDPESFDRLTEWFSFHLSNFGYKWNWSDWALYADAEMVDKFPY
RAMFCKDVLRRCIRLSYYERIIGIVPQEMSFFFPPKPGNGDRSRFNPEIN
DELMKIVTGKGKQDAPSVKRRLEELIPLREMEVDEGDKSSMEAEVNLARL
AALIRAILQAGCRTLSHFDIVSERYEGILREMSVKGGSLAKRLVTLEVVT
FWKDVHIRKMYVLDKLCARSVIDGQAIIDSCLAFERVSEKPGQTERISNK
DIEANLNDSGCWELIRLVMFRALSREEAARGELQLVSQKAASANEGETEN
VGVLLQGAKRKVEMAKKEVAELILVAQRRLFGIFSRLLMVNKTDTDDIVM
GQGGERELPGFSGKPIWYWRCSGMMRELARKHARHLSIIIDQLDNDTRDN
RDQHRVLWESFETIKEIEASDMLSRVF*
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mRNA from alignment at tig00000081_pilon:43249..44532+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6525.t1 ID=Ggra6525.t1|Name=Ggra6525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:43249..44532+ (Gracilaria gracilis GNS1m male)
ATGTTTCAGGAAGCTGGCGACATGGACCCGGAATCTTTCGATCGATTGAC
GGAATGGTTTTCATTCCATCTTAGCAACTTCGGGTATAAGTGGAACTGGT
CGGACTGGGCTCTGTATGCTGATGCGGAAATGGTGGATAAATTCCCGTAC
AGAGCGATGTTCTGCAAGGATGTTTTACGTCGATGTATTCGTCTATCGTA
TTACGAAAGAATCATTGGAATTGTACCACAAGAGATGAGCTTCTTCTTTC
CGCCTAAACCAGGAAATGGTGATAGATCGCGATTCAATCCAGAAATCAAT
GATGAGTTAATGAAAATTGTCACTGGTAAGGGGAAACAGGATGCTCCGTC
TGTGAAACGTAGATTAGAAGAGCTCATTCCATTGAGGGAGATGGAAGTTG
ACGAAGGAGACAAAAGCAGTATGGAAGCGGAAGTGAACCTTGCCCGCCTT
GCAGCCCTGATAAGAGCCATCCTTCAAGCTGGGTGTAGAACGCTCTCTCA
TTTCGACATCGTATCCGAGAGATATGAGGGCATTTTACGCGAAATGTCAG
TGAAGGGTGGTTCTCTTGCGAAGCGCCTAGTTACTCTGGAGGTAGTAACT
TTCTGGAAGGACGTTCACATCCGCAAAATGTATGTTCTGGACAAATTGTG
TGCCCGTTCTGTAATCGACGGGCAGGCTATAATAGACTCATGTCTCGCAT
TCGAGAGAGTAAGTGAGAAACCGGGGCAAACGGAGCGCATCAGTAACAAG
GATATTGAAGCGAACCTTAACGACTCTGGCTGTTGGGAGCTTATACGCCT
TGTAATGTTTAGAGCATTGTCAAGAGAGGAAGCAGCGCGAGGCGAACTTC
AACTTGTGTCGCAAAAAGCTGCATCTGCGAATGAGGGAGAAACGGAAAAT
GTGGGAGTACTTCTTCAAGGAGCTAAACGAAAAGTAGAAATGGCGAAGAA
GGAAGTCGCAGAGCTGATTTTAGTTGCCCAGAGACGGTTGTTTGGAATAT
TTTCCAGGCTCCTGATGGTCAACAAAACTGACACAGATGACATTGTGATG
GGCCAAGGAGGGGAAAGAGAACTTCCCGGTTTCAGTGGCAAACCAATCTG
GTACTGGAGGTGTTCTGGTATGATGCGAGAGTTGGCAAGGAAGCACGCCC
GGCATCTGTCAATCATCATTGACCAACTTGATAACGACACACGAGACAAT
CGGGATCAGCACCGGGTTCTGTGGGAGTCGTTTGAAACTATCAAGGAGAT
TGAAGCAAGCGATATGCTGAGTAGGGTATTTTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:43249..44532+

>Ggra6525.t1 ID=Ggra6525.t1|Name=Ggra6525.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000081_pilon:43249..44532+ (Gracilaria gracilis GNS1m male)
ATGTTTCAGGAAGCTGGCGACATGGACCCGGAATCTTTCGATCGATTGAC
GGAATGGTTTTCATTCCATCTTAGCAACTTCGGGTATAAGTGGAACTGGT
CGGACTGGGCTCTGTATGCTGATGCGGAAATGGTGGATAAATTCCCGTAC
AGAGCGATGTTCTGCAAGGATGTTTTACGTCGATGTATTCGTCTATCGTA
TTACGAAAGAATCATTGGAATTGTACCACAAGAGATGAGCTTCTTCTTTC
CGCCTAAACCAGGAAATGGTGATAGATCGCGATTCAATCCAGAAATCAAT
GATGAGTTAATGAAAATTGTCACTGGTAAGGGGAAACAGGATGCTCCGTC
TGTGAAACGTAGATTAGAAGAGCTCATTCCATTGAGGGAGATGGAAGTTG
ACGAAGGAGACAAAAGCAGTATGGAAGCGGAAGTGAACCTTGCCCGCCTT
GCAGCCCTGATAAGAGCCATCCTTCAAGCTGGGTGTAGAACGCTCTCTCA
TTTCGACATCGTATCCGAGAGATATGAGGGCATTTTACGCGAAATGTCAG
TGAAGGGTGGTTCTCTTGCGAAGCGCCTAGTTACTCTGGAGGTAGTAACT
TTCTGGAAGGACGTTCACATCCGCAAAATGTATGTTCTGGACAAATTGTG
TGCCCGTTCTGTAATCGACGGGCAGGCTATAATAGACTCATGTCTCGCAT
TCGAGAGAGTAAGTGAGAAACCGGGGCAAACGGAGCGCATCAGTAACAAG
GATATTGAAGCGAACCTTAACGACTCTGGCTGTTGGGAGCTTATACGCCT
TGTAATGTTTAGAGCATTGTCAAGAGAGGAAGCAGCGCGAGGCGAACTTC
AACTTGTGTCGCAAAAAGCTGCATCTGCGAATGAGGGAGAAACGGAAAAT
GTGGGAGTACTTCTTCAAGGAGCTAAACGAAAAGTAGAAATGGCGAAGAA
GGAAGTCGCAGAGCTGATTTTAGTTGCCCAGAGACGGTTGTTTGGAATAT
TTTCCAGGCTCCTGATGGTCAACAAAACTGACACAGATGACATTGTGATG
GGCCAAGGAGGGGAAAGAGAACTTCCCGGTTTCAGTGGCAAACCAATCTG
GTACTGGAGGTGTTCTGGTATGATGCGAGAGTTGGCAAGGAAGCACGCCC
GGCATCTGTCAATCATCATTGACCAACTTGATAACGACACACGAGACAAT
CGGGATCAGCACCGGGTTCTGTGGGAGTCGTTTGAAACTATCAAGGAGAT
TGAAGCAAGCGATATGCTGAGTAGGGTATTTTAG
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