Ggra6524.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6524.t1
Unique NameGgra6524.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:37128..39533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706962.1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08959
KEGG Pathwayko04340,ko04390,ko04540,ko04710,map04340,map04390,map04540,map04710
Evalue1.78e-60
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6524Ggra6524Gracilaria gracilis GNS1m malegenetig00000081_pilon 37128..39533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1Ggra6524.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 37128..39533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1.start1Ggra6524.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 37128..37130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1.CDS1Ggra6524.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 37128..37569 +
Ggra6524.t1.CDS2Ggra6524.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 39412..39533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1.exon1Ggra6524.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 37128..37569 +
Ggra6524.t1.exon2Ggra6524.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 39412..39533 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1.intron1Ggra6524.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 37570..39411 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6524.t1.stop1Ggra6524.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 39531..39533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6524.t1 ID=Ggra6524.t1|Name=Ggra6524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MDDDSRKDPVPFQVGEGSRRYIVFKHAHLGSGHFGDVYMGEHIHSAQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSRETVSVIGYKCVQLLRKLHSKGYVHGDVKPENFLLTR
PGFRMMRPSVQSCVDEASKPLFGKMFVKAEPLIPVQE*
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spliced messenger RNA

>Ggra6524.t1 ID=Ggra6524.t1|Name=Ggra6524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000081_pilon:37128..39533+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGACGACTCGCGAAAGGACCCCGTCCCGTTCCAGGTCGGCGAGGG
CTCTCGTCGCTACATTGTCTTCAAGCACGCCCACCTTGGATCCGGCCACT
TTGGCGATGTGTACATGGGTGAGCACATCCACAGCGCTCAGAAGGTCGCC
ATCAAGCTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTATATGAATGGAGACGGCGCCCCCAGAGTCCACTACACTGGCC
ATCACGGTCGCTATTATGTCATGGTAATGGATCTGCTCGGACCCACACTG
CAGAGACTGCTAGAAAGTCGCCCACCGCGCGGTCTGTCCCGGGAGACCGT
GTCTGTTATTGGTTACAAGTGCGTCCAGCTCTTGCGCAAGTTGCATTCGA
AGGGCTATGTGCATGGAGACGTCAAACCTGAAAACTTCCTCTTAACAAGA
CCCGGCTTCAGGATGATGAGACCTTCGGTACAGTCCTGCGTCGACGAAGC
TTCCAAACCCCTTTTCGGGAAAATGTTTGTGAAAGCCGAACCTTTGATAC
CGGTTCAAGAGTAG
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protein sequence of Ggra6524.t1

>Ggra6524.t1 ID=Ggra6524.t1|Name=Ggra6524.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MDDDSRKDPVPFQVGEGSRRYIVFKHAHLGSGHFGDVYMGEHIHSAQKVA
IKLEHRSGSIARREWEVMRYMNGDGAPRVHYTGHHGRYYVMVMDLLGPTL
QRLLESRPPRGLSRETVSVIGYKCVQLLRKLHSKGYVHGDVKPENFLLTR
PGFRMMRPSVQSCVDEASKPLFGKMFVKAEPLIPVQE*
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mRNA from alignment at tig00000081_pilon:37128..39533+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6524.t1 ID=Ggra6524.t1|Name=Ggra6524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2406bp|location=Sequence derived from alignment at tig00000081_pilon:37128..39533+ (Gracilaria gracilis GNS1m male)
ATGGACGACGACTCGCGAAAGGACCCCGTCCCGTTCCAGGTCGGCGAGGG
CTCTCGTCGCTACATTGTCTTCAAGCACGCCCACCTTGGATCCGGCCACT
TTGGCGATGTGTACATGGGTGAGCACATCCACAGCGCTCAGAAGGTCGCC
ATCAAGCTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTATATGAATGGAGACGGCGCCCCCAGAGTCCACTACACTGGCC
ATCACGGTCGCTATTATGTCATGGTAATGGATCTGCTCGGACCCACACTG
CAGAGACTGCTAGAAAGTCGCCCACCGCGCGGTCTGTCCCGGGAGACCGT
GTCTGTTATTGGTTACAAGTGCGTCCAGCTCTTGCGCAAGTTGCATTCGA
AGGGCTATGTGCATGGAGACGTCAAACCTGAAAACTTCCTCTGTGCCTAC
TCGGAGGAGAATGTTatcgaccccagtcgtggccttttcatggtcgactt
gggtctagcctcacgctggagagacctgtctaaaccaggaggccacattg
catatggccagcgagtggatcacttttcgggcaccgtgcgctacgcctct
gttaatgctcatctcggccgctggttgtcgagacgtgatgatttggagag
tctgggttatatgttgttatacttgttcaatggctcactaccgtggcagg
gttactcgggcgaggacaagaacatgcaggtttgtgagacaaaaggtcgc
atgaccgtggaggctatgtgccgcggtgcaccagaagtgctccaatactt
cttggcctatgtgcgccagatgaaattcgaggagtcccctgattatgact
atctaatgttgctatgtgacagtaatcggggactcaaggaggtcaaaaag
cttttgttagctcaggagaaggaacagcttggttcacctgaaatttatca
acctattgttggttcgaagagaaagcagcgcgatcttgatgacgttggcg
cacctttggtcaagaagcacaaagttgtgctaccgaagcgaatcaagact
catcagtggattattgtatccacaagcgcgcgaacgaacctttcaccgca
gactcaatgctacacctctcatacctcctaccccaatttagtcaaggaag
ttgagagaaagtggggactgttcatgcggataacgagtctcaactttgct
ggaggtatgtggactgcagtgcttaactcgcgcaattctggctatatgga
acaagcattgcactactgcaatgacccggactttccgcgagagtgggttc
gtcaaaagtgggaacagtcgtacttcattacctctgtggctggcaatgaa
agttgttggggagttgtgtgctctacaatgcaacggggacgtaagtacaa
acagcaatcttatattgtgtcggcgacgttcccttccaagtggatcgcag
acaaatggaacgccgactttcatattacctctattgcaacgcagggtcgc
ttgcagatgcagtggtgtgtcgtcatgtcgagaggcgcaccatacaagga
tcaatgtgttgaacttgactttcaatacccctcgcactctatccatgctc
gatgggacgagaactatatgattaccgctgttgcctgcacccaagagcaa
tgtgcgtttgttatgtcaagaggagcaagttacggtgaagaacagcggtg
cacccgtacctcacacggacctctacacaaaatacgggaagattggaacg
attctctctacgtaacttgtctgtcatacggtcgagtaagctaggcactt
cgagagccgcgttgtgtgattgtcaggccactctacgcttctcgctttcc
tgcgaccagtcgtatgaatcctcgagctgcacatttcttgtgcatatgac
gttttgatgctgaggtggccttcttcggggtatctagcatgttggttaca
ggggttttctacactgaacactggccgcatgcatcaagcccaagctaggt
ggccctgtggagattaggcagattagcgaAGTTGTAGTCAGTACAAAGAC
CCAAaacaaaaacattaaaccttcggcaaaaccatgtatattcattcgat
atctactacaatcggaaAGTGTCTTGCTTCCCTCTCACGATACGGCACTA
TTAAAAACCAATGCCGCCATGGAACGGTTCACGTGTTCCACTATTAGATA
TTGATACCCTTATACCATGTCAACACCTAACACTACTGTCCCTGGCATAT
TGGATCGTTTGATTCCACTGTCCACCTTGCTCAGTAACAAGACCCGGCTT
CAGGATGATGAGACCTTCGGTACAGTCCTGCGTCGACGAAGCTTCCAAAC
CCCTTTTCGGGAAAATGTTTGTGAAAGCCGAACCTTTGATACCGGTTCAA
GAGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:37128..39533+

>Ggra6524.t1 ID=Ggra6524.t1|Name=Ggra6524.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000081_pilon:37128..39533+ (Gracilaria gracilis GNS1m male)
ATGGACGACGACTCGCGAAAGGACCCCGTCCCGTTCCAGGTCGGCGAGGG
CTCTCGTCGCTACATTGTCTTCAAGCACGCCCACCTTGGATCCGGCCACT
TTGGCGATGTGTACATGGGTGAGCACATCCACAGCGCTCAGAAGGTCGCC
ATCAAGCTCGAGCATCGATCCGGCTCCATTGCGCGCCGCGAATGGGAGGT
CATGCGCTATATGAATGGAGACGGCGCCCCCAGAGTCCACTACACTGGCC
ATCACGGTCGCTATTATGTCATGGTAATGGATCTGCTCGGACCCACACTG
CAGAGACTGCTAGAAAGTCGCCCACCGCGCGGTCTGTCCCGGGAGACCGT
GTCTGTTATTGGTTACAAGTGCGTCCAGCTCTTGCGCAAGTTGCATTCGA
AGGGCTATGTGCATGGAGACGTCAAACCTGAAAACTTCCTCTTAACAAGA
CCCGGCTTCAGGATGATGAGACCTTCGGTACAGTCCTGCGTCGACGAAGC
TTCCAAACCCCTTTTCGGGAAAATGTTTGTGAAAGCCGAACCTTTGATAC
CGGTTCAAGAGTAG
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