Ggra6512.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6512.t1
Unique Name	Ggra6512.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	528

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:658003..659666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo133047
Max annot lvl	4776\|Peronosporales
Evalue	1.33e-11
EggNOG OGs	2D136@1\|root,2SGIM@2759\|Eukaryota,3QGY8@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6512	Ggra6512	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 658003..659666 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1	Ggra6512.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 658003..659666 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1.start1	Ggra6512.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 658003..658005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1.CDS1	Ggra6512.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 658003..658855 +
Ggra6512.t1.CDS2	Ggra6512.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 658936..659666 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1.exon1	Ggra6512.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 658003..658855 +
Ggra6512.t1.exon2	Ggra6512.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 658936..659666 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1.intron1	Ggra6512.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000074_pilon 658856..658935 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6512.t1.stop1	Ggra6512.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 659664..659666 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:658003..659666+
coding sequence from alignment at tig00000074_pilon:658003..659666+

mRNA sequence

>Ggra6512.t1 ID=Ggra6512.t1|Name=Ggra6512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp
MSSASPTPSPKQVVYAIAKYKRTELKTVKNKASKVVQVAHLVFKCPNQHC
KEPNQEIIFQKGKGFFNPFRHLNACVAAGDETHLQELYRENEQRKRQHPE
DIFSNSFICKIPPNERAMYGYIKLIVMNNFPFTIVEDKNIKNSSKHNINF
SIHTIRRVLLKLTQLVEKRISLELLEAKKGAILHDGCTCGGVRYIGLYAS
YIPHIRSATLSNRDEGEVRVEFALLSCSPMAKVDSADEGEPRDTQEDAEA
FDFAADTHVQHIRDMFRFYDIETSLWVVCQIADNLNQMVRITLDLERTLE
TVHETMKQCQQRLKNAALLRNTIDIRPITYNQTRWFVKFHMLERFLRIRD
ELIEISQDPQSGLDINTSDTFKRKVGRYCIQMEQINYSTRELQTRKLLLL
YCRNVLCLLLEDVESGFHVSNSPFHLCFLKDNYIGTDANIMHDAFFESGV
SKIQENWVSDMSAGEKHACQKLLLPVEEPEDDQNGVVDSLSSYRNRLQHW
KRRKVATGASYMNCDFILVSVAEVERL*

spliced messenger RNA

>Ggra6512.t1 ID=Ggra6512.t1|Name=Ggra6512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1584bp|location=Sequence derived from alignment at tig00000074_pilon:658003..659666+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCGCCTCACCCACTCCCAGCCCAAAACAAGTCGTTTACGCTAT
TGCAAAGTACAAACGCACAGAGCTGAAAACAGTCAAAAACAAAGCATCAA
AGGTGGTTCAAGTGGCACATCTTGTGTTCAAATGCCCAAACCAACACTGC
AAAGAACCGAACCAAGAAATTATCTTTCAGAAAGGAAAGGGCTTCTTCAA
TCCATTCCGCCACTTGAATGCATGCGTGGCTGCAGGCGATGAAACGCATC
TCCAAGAACTCTACCGCGAAAATGAGCAACGAAAGCGACAACATCCAGAA
GACATCTTTTCGAACAGCTTTATCTGCAAAATACCGCCCAATGAAAGGGC
AATGTACGGCTATATAAAACTGATTGTGATGAACAATTTTCCTTTCACAA
TCGTAGAGGACAAGAATATAAAGAACTCTTCAAAGCACAACATTAATTTT
TCGATACACACGATACGACGCGTACTATTGAAACTAACGCAACTGGTGGA
AAAGCGCATAAGCCTTGAGCTTCTGGAAGCAAAGAAGGGAGCCATACTCC
ATGATGGCTGTACATGCGGTGGTGTGCGCTACATTGGCCTTTACGCATCT
TACATTCCCCACATACGAAGCGCGACTTTGAGTAACAGAGATGAAGGTGA
AGTACGTGTCGAGTTTGCGCTACTATCCTGCTCACCCATGGCGAAGGTTG
ACTCAGCCGATGAAGGGGAACCAAGAGATACACAGGAGGATGCGGAAGCC
TTCGATTTTGCAGCGGACACGCATGTACAGCATATCAGAGATATGTTTCG
ATTCTACGACATTGAAACATCGTTGTGGGTTGTGTGCCAAATTGCGGACA
ATTTGAATCAAATGGTGCGCATAACACTGGACTTGGAGCGCACGTTAGAA
ACTGTTCACGAGACAATGAAGCAATGCCAGCAACGATTGAAAAACGCCGC
CCTTCTTCGGAACACTATTGACATCCGGCCAATTACGTACAACCAAACGC
GCTGGTTTGTTAAGTTTCACATGCTAGAGCGCTTTCTACGCATTAGGGAT
GAGCTGATTGAGATCAGCCAGGATCCTCAGTCAGGGCTCGATATCAACAC
TAGTGACACGTTTAAGAGAAAGGTTGGGAGGTATTGTATTCAAATGGAGC
AAATTAACTATAGTACTCGGGAGCTGCAGACGCGCAAGCTTTTACTCCTG
TACTGCCGAAATGTTCTGTGCCTACTTTTGGAAGACGTTGAATCTGGGTT
TCATGTTTCAAATTCACCGTTCCATCTGTGCTTTCTGAAGGACAATTATA
TTGGGACAGACGCCAATATTATGCACGACGCATTTTTCGAGAGTGGCGTA
TCCAAGATACAGGAAAATTGGGTTTCTGATATGTCTGCTGGGGAGAAGCA
TGCTTGCCAGAAGTTATTGCTTCCTGTAGAAGAACCTGAAGATGATCAAA
ACGGTGTGGTTGATTCTCTTTCGTCGTATCGAAACCGTTTGCAGCATTGG
AAGCGACGTAAGGTTGCTACAGGAGCTTCTTATATGAATTGTGATTTTAT
CTTGGTTTCGGTAGCAGAAGTGGAGAGGTTATGA

protein sequence of Ggra6512.t1

>Ggra6512.t1 ID=Ggra6512.t1|Name=Ggra6512.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=528bp
MSSASPTPSPKQVVYAIAKYKRTELKTVKNKASKVVQVAHLVFKCPNQHC
KEPNQEIIFQKGKGFFNPFRHLNACVAAGDETHLQELYRENEQRKRQHPE
DIFSNSFICKIPPNERAMYGYIKLIVMNNFPFTIVEDKNIKNSSKHNINF
SIHTIRRVLLKLTQLVEKRISLELLEAKKGAILHDGCTCGGVRYIGLYAS
YIPHIRSATLSNRDEGEVRVEFALLSCSPMAKVDSADEGEPRDTQEDAEA
FDFAADTHVQHIRDMFRFYDIETSLWVVCQIADNLNQMVRITLDLERTLE
TVHETMKQCQQRLKNAALLRNTIDIRPITYNQTRWFVKFHMLERFLRIRD
ELIEISQDPQSGLDINTSDTFKRKVGRYCIQMEQINYSTRELQTRKLLLL
YCRNVLCLLLEDVESGFHVSNSPFHLCFLKDNYIGTDANIMHDAFFESGV
SKIQENWVSDMSAGEKHACQKLLLPVEEPEDDQNGVVDSLSSYRNRLQHW
KRRKVATGASYMNCDFILVSVAEVERL*

mRNA from alignment at tig00000074_pilon:658003..659666+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6512.t1 ID=Ggra6512.t1|Name=Ggra6512.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1664bp|location=Sequence derived from alignment at tig00000074_pilon:658003..659666+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCGCCTCACCCACTCCCAGCCCAAAACAAGTCGTTTACGCTAT
TGCAAAGTACAAACGCACAGAGCTGAAAACAGTCAAAAACAAAGCATCAA
AGGTGGTTCAAGTGGCACATCTTGTGTTCAAATGCCCAAACCAACACTGC
AAAGAACCGAACCAAGAAATTATCTTTCAGAAAGGAAAGGGCTTCTTCAA
TCCATTCCGCCACTTGAATGCATGCGTGGCTGCAGGCGATGAAACGCATC
TCCAAGAACTCTACCGCGAAAATGAGCAACGAAAGCGACAACATCCAGAA
GACATCTTTTCGAACAGCTTTATCTGCAAAATACCGCCCAATGAAAGGGC
AATGTACGGCTATATAAAACTGATTGTGATGAACAATTTTCCTTTCACAA
TCGTAGAGGACAAGAATATAAAGAACTCTTCAAAGCACAACATTAATTTT
TCGATACACACGATACGACGCGTACTATTGAAACTAACGCAACTGGTGGA
AAAGCGCATAAGCCTTGAGCTTCTGGAAGCAAAGAAGGGAGCCATACTCC
ATGATGGCTGTACATGCGGTGGTGTGCGCTACATTGGCCTTTACGCATCT
TACATTCCCCACATACGAAGCGCGACTTTGAGTAACAGAGATGAAGGTGA
AGTACGTGTCGAGTTTGCGCTACTATCCTGCTCACCCATGGCGAAGGTTG
ACTCAGCCGATGAAGGGGAACCAAGAGATACACAGGAGGATGCGGAAGCC
TTCGATTTTGCAGCGGACACGCATGTACAGCATATCAGAGATATGTTTCG
ATTCTACGACATTGAAACATCGTTGTGGGTTGTGTGCCAAATTGCGGACA
ATTGTAATGTCAACACAATTGAGTTGCAAGATTGTTGGACATCCCTCATC
GGGCATGCAAGAGCCACCTACTTAACTTCGAAGTGAATCAAATGGTGCGC
ATAACACTGGACTTGGAGCGCACGTTAGAAACTGTTCACGAGACAATGAA
GCAATGCCAGCAACGATTGAAAAACGCCGCCCTTCTTCGGAACACTATTG
ACATCCGGCCAATTACGTACAACCAAACGCGCTGGTTTGTTAAGTTTCAC
ATGCTAGAGCGCTTTCTACGCATTAGGGATGAGCTGATTGAGATCAGCCA
GGATCCTCAGTCAGGGCTCGATATCAACACTAGTGACACGTTTAAGAGAA
AGGTTGGGAGGTATTGTATTCAAATGGAGCAAATTAACTATAGTACTCGG
GAGCTGCAGACGCGCAAGCTTTTACTCCTGTACTGCCGAAATGTTCTGTG
CCTACTTTTGGAAGACGTTGAATCTGGGTTTCATGTTTCAAATTCACCGT
TCCATCTGTGCTTTCTGAAGGACAATTATATTGGGACAGACGCCAATATT
ATGCACGACGCATTTTTCGAGAGTGGCGTATCCAAGATACAGGAAAATTG
GGTTTCTGATATGTCTGCTGGGGAGAAGCATGCTTGCCAGAAGTTATTGC
TTCCTGTAGAAGAACCTGAAGATGATCAAAACGGTGTGGTTGATTCTCTT
TCGTCGTATCGAAACCGTTTGCAGCATTGGAAGCGACGTAAGGTTGCTAC
AGGAGCTTCTTATATGAATTGTGATTTTATCTTGGTTTCGGTAGCAGAAG
TGGAGAGGTTATGA

Coding sequence (CDS) from alignment at tig00000074_pilon:658003..659666+

>Ggra6512.t1 ID=Ggra6512.t1|Name=Ggra6512.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1584bp|location=Sequence derived from alignment at tig00000074_pilon:658003..659666+ (Gracilaria gracilis GNS1m male)
ATGTCCAGCGCCTCACCCACTCCCAGCCCAAAACAAGTCGTTTACGCTAT
TGCAAAGTACAAACGCACAGAGCTGAAAACAGTCAAAAACAAAGCATCAA
AGGTGGTTCAAGTGGCACATCTTGTGTTCAAATGCCCAAACCAACACTGC
AAAGAACCGAACCAAGAAATTATCTTTCAGAAAGGAAAGGGCTTCTTCAA
TCCATTCCGCCACTTGAATGCATGCGTGGCTGCAGGCGATGAAACGCATC
TCCAAGAACTCTACCGCGAAAATGAGCAACGAAAGCGACAACATCCAGAA
GACATCTTTTCGAACAGCTTTATCTGCAAAATACCGCCCAATGAAAGGGC
AATGTACGGCTATATAAAACTGATTGTGATGAACAATTTTCCTTTCACAA
TCGTAGAGGACAAGAATATAAAGAACTCTTCAAAGCACAACATTAATTTT
TCGATACACACGATACGACGCGTACTATTGAAACTAACGCAACTGGTGGA
AAAGCGCATAAGCCTTGAGCTTCTGGAAGCAAAGAAGGGAGCCATACTCC
ATGATGGCTGTACATGCGGTGGTGTGCGCTACATTGGCCTTTACGCATCT
TACATTCCCCACATACGAAGCGCGACTTTGAGTAACAGAGATGAAGGTGA
AGTACGTGTCGAGTTTGCGCTACTATCCTGCTCACCCATGGCGAAGGTTG
ACTCAGCCGATGAAGGGGAACCAAGAGATACACAGGAGGATGCGGAAGCC
TTCGATTTTGCAGCGGACACGCATGTACAGCATATCAGAGATATGTTTCG
ATTCTACGACATTGAAACATCGTTGTGGGTTGTGTGCCAAATTGCGGACA
ATTTGAATCAAATGGTGCGCATAACACTGGACTTGGAGCGCACGTTAGAA
ACTGTTCACGAGACAATGAAGCAATGCCAGCAACGATTGAAAAACGCCGC
CCTTCTTCGGAACACTATTGACATCCGGCCAATTACGTACAACCAAACGC
GCTGGTTTGTTAAGTTTCACATGCTAGAGCGCTTTCTACGCATTAGGGAT
GAGCTGATTGAGATCAGCCAGGATCCTCAGTCAGGGCTCGATATCAACAC
TAGTGACACGTTTAAGAGAAAGGTTGGGAGGTATTGTATTCAAATGGAGC
AAATTAACTATAGTACTCGGGAGCTGCAGACGCGCAAGCTTTTACTCCTG
TACTGCCGAAATGTTCTGTGCCTACTTTTGGAAGACGTTGAATCTGGGTT
TCATGTTTCAAATTCACCGTTCCATCTGTGCTTTCTGAAGGACAATTATA
TTGGGACAGACGCCAATATTATGCACGACGCATTTTTCGAGAGTGGCGTA
TCCAAGATACAGGAAAATTGGGTTTCTGATATGTCTGCTGGGGAGAAGCA
TGCTTGCCAGAAGTTATTGCTTCCTGTAGAAGAACCTGAAGATGATCAAA
ACGGTGTGGTTGATTCTCTTTCGTCGTATCGAAACCGTTTGCAGCATTGG
AAGCGACGTAAGGTTGCTACAGGAGCTTCTTATATGAATTGTGATTTTAT
CTTGGTTTCGGTAGCAGAAGTGGAGAGGTTATGA