Ggra6510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6510.t1
Unique NameGgra6510.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:576381..577397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6510Ggra6510Gracilaria gracilis GNS1m malegenetig00000074_pilon 576381..577397 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6510.t1.stop1Ggra6510.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 576381..576383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6510.t1.CDS1Ggra6510.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 576381..577397 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6510.t1.exon1Ggra6510.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 576381..577397 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6510.t1.start1Ggra6510.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 577395..577397 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6510.t1Ggra6510.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 576381..577397 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6510.t1 ID=Ggra6510.t1|Name=Ggra6510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp
MHFPQPLPPQKPPPSPPSPRTPCDTSPPTTPPTTPPTTPSSSGCSSPPSL
LLPLSVLLDQYAAELELHEASPVSAFSPSSSSLSSSLSPSLRKLASDAVR
VSADTLARQSELKRWEQLHQASSHETERLSKLYADQQQHAHILDAQLSRS
HRDMSRLQARHLLCMREVQQLRDCVATLHAAHTVDANINALLIGDQSCEI
DELKRKLREADRHRQLLNKLLQRATPKGMPKREFNSPDAAQGGSSAEQRR
RGQDRENVPINTASYSEGKIIAGLVRRVSSRDPIKRKELNRLQRSKQNLL
DAYQRRNSTTLDNVVRRTSQMSVASATEFSGSPVQSAD*
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spliced messenger RNA

>Ggra6510.t1 ID=Ggra6510.t1|Name=Ggra6510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:576381..577397- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTTCCCACAGCCGCTTCCTCCGCAGAAGCCTCCGCCATCACCGCC
GTCGCCACGAACGCCGTGCGACACGAGCCCGCCCACCACGCCGCCCACCA
CGCCGCCCACCACGCCGTCTTCGTCGGGCTGTTCGTCGCCGCCTTCGCTC
TTGTTGCCGCTTTCTGTTTTGCTCGATCAGTACGCGGCGGAGCTTGAGCT
GCATGAAGCTTCGCCTGTATCCGCTTTCTCTCCTTCGTCGTCTTCGTTGT
CATCGTCGCTGTCACCGTCGTTGAGGAAACTTGCTTCAGATGCGGTCCGC
GTCTCCGCGGATACGCTTGCTAGGCAAAGCGAGTTGAAGCGTTGGGAGCA
ACTTCATCAAGCCTCTTCTCACGAGACCGAGCGACTGTCGAAGCTGTACG
CCGACCAACAGCAACATGCACACATTCTCGACGCGCAACTCTCAAGATCG
CATCGCGATATGAGCAGATTACAAGCTCGACACCTTCTGTGTATGCGAGA
AGTGCAACAGTTGAGAGATTGCGTCGCAACCTTGCACGCCGCACATACAG
TCGATGCCAACATTAACGCATTGCTCATTGGAGATCAATCGTGCGAGATC
GACGAGTTGAAGCGAAAACTTAGAGAAGCAGATAGACATCGTCAACTGCT
CAACAAGTTGTTGCAACGCGCCACACCAAAGGGAATGCCCAAGCGAGAGT
TCAATTCCCCCGACGCCGCTCAAGGTGGCTCCAGTGCGGAACAACGCCGA
CGAGGCCAAGACCGCGAAAATGTCCCCATCAACACGGCGAGCTATTCTGA
GGGCAAGATCATCGCGGGGCTCGTCAGACGCGTTTCTTCTCGTGACCCTA
TCAAGAGAAAGGAACTCAATCGGCTTCAGAGATCCAAGCAAAATCTGCTT
GACGCTTACCAGAGACGAAATTCTACAACGTTGGACAATGTCGTTCGTAG
AACGTCACAGATGTCAGTAGCATCCGCCACTGAGTTTTCCGGGTCTCCTG
TGCAGAGCGCAGACTGA
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protein sequence of Ggra6510.t1

>Ggra6510.t1 ID=Ggra6510.t1|Name=Ggra6510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=339bp
MHFPQPLPPQKPPPSPPSPRTPCDTSPPTTPPTTPPTTPSSSGCSSPPSL
LLPLSVLLDQYAAELELHEASPVSAFSPSSSSLSSSLSPSLRKLASDAVR
VSADTLARQSELKRWEQLHQASSHETERLSKLYADQQQHAHILDAQLSRS
HRDMSRLQARHLLCMREVQQLRDCVATLHAAHTVDANINALLIGDQSCEI
DELKRKLREADRHRQLLNKLLQRATPKGMPKREFNSPDAAQGGSSAEQRR
RGQDRENVPINTASYSEGKIIAGLVRRVSSRDPIKRKELNRLQRSKQNLL
DAYQRRNSTTLDNVVRRTSQMSVASATEFSGSPVQSAD*
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mRNA from alignment at tig00000074_pilon:576381..577397-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6510.t1 ID=Ggra6510.t1|Name=Ggra6510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:576381..577397- (Gracilaria gracilis GNS1m male)
ATGCATTTCCCACAGCCGCTTCCTCCGCAGAAGCCTCCGCCATCACCGCC
GTCGCCACGAACGCCGTGCGACACGAGCCCGCCCACCACGCCGCCCACCA
CGCCGCCCACCACGCCGTCTTCGTCGGGCTGTTCGTCGCCGCCTTCGCTC
TTGTTGCCGCTTTCTGTTTTGCTCGATCAGTACGCGGCGGAGCTTGAGCT
GCATGAAGCTTCGCCTGTATCCGCTTTCTCTCCTTCGTCGTCTTCGTTGT
CATCGTCGCTGTCACCGTCGTTGAGGAAACTTGCTTCAGATGCGGTCCGC
GTCTCCGCGGATACGCTTGCTAGGCAAAGCGAGTTGAAGCGTTGGGAGCA
ACTTCATCAAGCCTCTTCTCACGAGACCGAGCGACTGTCGAAGCTGTACG
CCGACCAACAGCAACATGCACACATTCTCGACGCGCAACTCTCAAGATCG
CATCGCGATATGAGCAGATTACAAGCTCGACACCTTCTGTGTATGCGAGA
AGTGCAACAGTTGAGAGATTGCGTCGCAACCTTGCACGCCGCACATACAG
TCGATGCCAACATTAACGCATTGCTCATTGGAGATCAATCGTGCGAGATC
GACGAGTTGAAGCGAAAACTTAGAGAAGCAGATAGACATCGTCAACTGCT
CAACAAGTTGTTGCAACGCGCCACACCAAAGGGAATGCCCAAGCGAGAGT
TCAATTCCCCCGACGCCGCTCAAGGTGGCTCCAGTGCGGAACAACGCCGA
CGAGGCCAAGACCGCGAAAATGTCCCCATCAACACGGCGAGCTATTCTGA
GGGCAAGATCATCGCGGGGCTCGTCAGACGCGTTTCTTCTCGTGACCCTA
TCAAGAGAAAGGAACTCAATCGGCTTCAGAGATCCAAGCAAAATCTGCTT
GACGCTTACCAGAGACGAAATTCTACAACGTTGGACAATGTCGTTCGTAG
AACGTCACAGATGTCAGTAGCATCCGCCACTGAGTTTTCCGGGTCTCCTG
TGCAGAGCGCAGACTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:576381..577397-

>Ggra6510.t1 ID=Ggra6510.t1|Name=Ggra6510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000074_pilon:576381..577397- (Gracilaria gracilis GNS1m male)
ATGCATTTCCCACAGCCGCTTCCTCCGCAGAAGCCTCCGCCATCACCGCC
GTCGCCACGAACGCCGTGCGACACGAGCCCGCCCACCACGCCGCCCACCA
CGCCGCCCACCACGCCGTCTTCGTCGGGCTGTTCGTCGCCGCCTTCGCTC
TTGTTGCCGCTTTCTGTTTTGCTCGATCAGTACGCGGCGGAGCTTGAGCT
GCATGAAGCTTCGCCTGTATCCGCTTTCTCTCCTTCGTCGTCTTCGTTGT
CATCGTCGCTGTCACCGTCGTTGAGGAAACTTGCTTCAGATGCGGTCCGC
GTCTCCGCGGATACGCTTGCTAGGCAAAGCGAGTTGAAGCGTTGGGAGCA
ACTTCATCAAGCCTCTTCTCACGAGACCGAGCGACTGTCGAAGCTGTACG
CCGACCAACAGCAACATGCACACATTCTCGACGCGCAACTCTCAAGATCG
CATCGCGATATGAGCAGATTACAAGCTCGACACCTTCTGTGTATGCGAGA
AGTGCAACAGTTGAGAGATTGCGTCGCAACCTTGCACGCCGCACATACAG
TCGATGCCAACATTAACGCATTGCTCATTGGAGATCAATCGTGCGAGATC
GACGAGTTGAAGCGAAAACTTAGAGAAGCAGATAGACATCGTCAACTGCT
CAACAAGTTGTTGCAACGCGCCACACCAAAGGGAATGCCCAAGCGAGAGT
TCAATTCCCCCGACGCCGCTCAAGGTGGCTCCAGTGCGGAACAACGCCGA
CGAGGCCAAGACCGCGAAAATGTCCCCATCAACACGGCGAGCTATTCTGA
GGGCAAGATCATCGCGGGGCTCGTCAGACGCGTTTCTTCTCGTGACCCTA
TCAAGAGAAAGGAACTCAATCGGCTTCAGAGATCCAAGCAAAATCTGCTT
GACGCTTACCAGAGACGAAATTCTACAACGTTGGACAATGTCGTTCGTAG
AACGTCACAGATGTCAGTAGCATCCGCCACTGAGTTTTCCGGGTCTCCTG
TGCAGAGCGCAGACTGA
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