Ggra6505.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6505.t1
Unique NameGgra6505.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:564633..565298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010241237.1
PFAMsRibosomal_S5,Ribosomal_S5_C
Max annot lvl35493|Streptophyta
KEGG koko:K02981
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.23e-110
EggNOG OGsCOG0098@1|root,KOG0877@2759|Eukaryota,37QF0@33090|Viridiplantae,3GC84@35493|Streptophyta
DescriptionBelongs to the universal ribosomal protein uS5 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6505Ggra6505Gracilaria gracilis GNS1m malegenetig00000074_pilon 564633..565298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6505.t1.start1Ggra6505.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 564633..564635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6505.t1.CDS1Ggra6505.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 564633..565298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6505.t1.exon1Ggra6505.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 564633..565298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6505.t1.stop1Ggra6505.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 565296..565298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6505.t1Ggra6505.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 564633..565298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6505.t1 ID=Ggra6505.t1|Name=Ggra6505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MTKLGRLVKEGHIRSLEEIFLFSIPVKEFQIIEALLSGLQDEVLKIMAVQ
KQTRAGQRTRFKAFVVVGDSKGHVGLGVKSAKEVATAIRGAIVNSKLNII
PVRRGYWGAAIDQPHTVPCKVTGKCGSVSVRLVPAPRGTGLVAARVPKKL
LQMAGLEDCFSSSTGHTRTLGNFAKATFYAISHTYAYLSPEFWRETRFAK
NPFQVYSELLAKAQPVPTIGA*
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spliced messenger RNA

>Ggra6505.t1 ID=Ggra6505.t1|Name=Ggra6505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000074_pilon:564633..565298+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAGCTTGGACGACTAGTAAAGGAGGGTCACATCCGATCACTCGA
GGAGATCTTCTTGTTCTCCATCCCAGTCAAGGAGTTTCAGATCATTGAAG
CCTTGCTCTCCGGTCTGCAGGACGAAGTGCTCAAGATCATGGCCGTGCAG
AAGCAGACCCGTGCTGGACAACGTACCCGCTTTAAGGCTTTCGTCGTCGT
GGGTGATTCCAAGGGCCATGTCGGTCTTGGCGTCAAGTCAGCTAAGGAAG
TTGCCACTGCGATTCGCGGGGCTATCGTTAATTCTAAACTGAACATTATT
CCCGTGCGTCGTGGATACTGGGGAGCTGCAATCGATCAACCGCATACTGT
GCCATGCAAGGTAACTGGAAAGTGTGGTTCTGTCAGCGTGAGACTTGTTC
CGGCTCCGCGTGGTACGGGTCTTGTCGCCGCTCGCGTGCCGAAGAAACTT
TTGCAAATGGCGGGGCTTGAAGATTGTTTCTCTTCATCTACTGGTCATAC
ACGCACGCTTGGAAACTTTGCGAAGGCTACCTTTTACGCGATTTCGCACA
CGTACGCGTATCTGTCTCCAGAGTTCTGGAGAGAGACTCGATTCGCTAAG
AATCCGTTCCAAGTATACTCTGAACTACTGGCTAAAGCCCAGCCAGTTCC
TACGATTGGTGCCTAA
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protein sequence of Ggra6505.t1

>Ggra6505.t1 ID=Ggra6505.t1|Name=Ggra6505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MTKLGRLVKEGHIRSLEEIFLFSIPVKEFQIIEALLSGLQDEVLKIMAVQ
KQTRAGQRTRFKAFVVVGDSKGHVGLGVKSAKEVATAIRGAIVNSKLNII
PVRRGYWGAAIDQPHTVPCKVTGKCGSVSVRLVPAPRGTGLVAARVPKKL
LQMAGLEDCFSSSTGHTRTLGNFAKATFYAISHTYAYLSPEFWRETRFAK
NPFQVYSELLAKAQPVPTIGA*
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mRNA from alignment at tig00000074_pilon:564633..565298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6505.t1 ID=Ggra6505.t1|Name=Ggra6505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000074_pilon:564633..565298+ (Gracilaria gracilis GNS1m male)
ATGACAAAGCTTGGACGACTAGTAAAGGAGGGTCACATCCGATCACTCGA
GGAGATCTTCTTGTTCTCCATCCCAGTCAAGGAGTTTCAGATCATTGAAG
CCTTGCTCTCCGGTCTGCAGGACGAAGTGCTCAAGATCATGGCCGTGCAG
AAGCAGACCCGTGCTGGACAACGTACCCGCTTTAAGGCTTTCGTCGTCGT
GGGTGATTCCAAGGGCCATGTCGGTCTTGGCGTCAAGTCAGCTAAGGAAG
TTGCCACTGCGATTCGCGGGGCTATCGTTAATTCTAAACTGAACATTATT
CCCGTGCGTCGTGGATACTGGGGAGCTGCAATCGATCAACCGCATACTGT
GCCATGCAAGGTAACTGGAAAGTGTGGTTCTGTCAGCGTGAGACTTGTTC
CGGCTCCGCGTGGTACGGGTCTTGTCGCCGCTCGCGTGCCGAAGAAACTT
TTGCAAATGGCGGGGCTTGAAGATTGTTTCTCTTCATCTACTGGTCATAC
ACGCACGCTTGGAAACTTTGCGAAGGCTACCTTTTACGCGATTTCGCACA
CGTACGCGTATCTGTCTCCAGAGTTCTGGAGAGAGACTCGATTCGCTAAG
AATCCGTTCCAAGTATACTCTGAACTACTGGCTAAAGCCCAGCCAGTTCC
TACGATTGGTGCCTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:564633..565298+

>Ggra6505.t1 ID=Ggra6505.t1|Name=Ggra6505.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000074_pilon:564633..565298+ (Gracilaria gracilis GNS1m male)
ATGACAAAGCTTGGACGACTAGTAAAGGAGGGTCACATCCGATCACTCGA
GGAGATCTTCTTGTTCTCCATCCCAGTCAAGGAGTTTCAGATCATTGAAG
CCTTGCTCTCCGGTCTGCAGGACGAAGTGCTCAAGATCATGGCCGTGCAG
AAGCAGACCCGTGCTGGACAACGTACCCGCTTTAAGGCTTTCGTCGTCGT
GGGTGATTCCAAGGGCCATGTCGGTCTTGGCGTCAAGTCAGCTAAGGAAG
TTGCCACTGCGATTCGCGGGGCTATCGTTAATTCTAAACTGAACATTATT
CCCGTGCGTCGTGGATACTGGGGAGCTGCAATCGATCAACCGCATACTGT
GCCATGCAAGGTAACTGGAAAGTGTGGTTCTGTCAGCGTGAGACTTGTTC
CGGCTCCGCGTGGTACGGGTCTTGTCGCCGCTCGCGTGCCGAAGAAACTT
TTGCAAATGGCGGGGCTTGAAGATTGTTTCTCTTCATCTACTGGTCATAC
ACGCACGCTTGGAAACTTTGCGAAGGCTACCTTTTACGCGATTTCGCACA
CGTACGCGTATCTGTCTCCAGAGTTCTGGAGAGAGACTCGATTCGCTAAG
AATCCGTTCCAAGTATACTCTGAACTACTGGCTAAAGCCCAGCCAGTTCC
TACGATTGGTGCCTAA
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