Ggra6503.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6503.t1
Unique NameGgra6503.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:560083..561303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704770.1
Preferred nameDGK1
PFAMsDAGK_acc,DAGK_cat
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K00411,ko:K00901
KEGG ReactionR02240
KEGG Pathwayko00190,ko00561,ko00564,ko01100,ko01110,ko02020,ko04070,ko04072,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05231,map00190,map00561,map00564,map01100,map01110,map02020,map04070,map04072,map04260,map04714,map04932,map05010,map05012,map05016,map05231
KEGG ModuleM00151,M00152
GOsGO:0000166,GO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006629,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007205,GO:0007275,GO:0007596,GO:0007599,GO:0007610,GO:0007635,GO:0008144,GO:0008150,GO:0008152,GO:0008289,GO:0009266,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009611,GO:0009628,GO:0009653,GO:0009987,GO:0010646,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019538,GO:0019992,GO:0022622,GO:0023051,GO:0023052,GO:0030054,GO:0030168,GO:0030258,GO:0030425,GO:0030554,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0040011,GO:0040012,GO:0042048,GO:0042060,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043052,GO:0043167,GO:0043168,GO:0043170,GO:0043197,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044267,GO:0044309,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0046777,GO:0046834,GO:0048167,GO:0048168,GO:0048169,GO:0048364,GO:0048366,GO:0048367,GO:0048583,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050804,GO:0050817,GO:0050878,GO:0050896,GO:0050920,GO:0050926,GO:0051716,GO:0055044,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0098794,GO:0099177,GO:0099402,GO:0120025,GO:0120038,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Evalue1.26e-59
EggNOG OGsKOG1169@1|root,KOG1169@2759|Eukaryota
EC1.10.2.2,2.7.1.107
Descriptionprotein kinase C-activating G-protein coupled receptor signaling pathway
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6503Ggra6503Gracilaria gracilis GNS1m malegenetig00000074_pilon 560083..561303 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6503.t1.start1Ggra6503.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 560083..560085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6503.t1.CDS1Ggra6503.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 560083..561303 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6503.t1.exon1Ggra6503.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 560083..561303 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6503.t1.stop1Ggra6503.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 561301..561303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6503.t1Ggra6503.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 560083..561303 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6503.t1 ID=Ggra6503.t1|Name=Ggra6503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MDVMNMIALVNCSSGGNMGRAVLELLKNQIGDENVFDIKADNGPERALRL
RALHSQHHLICIVAGGDGTFSWVANAVEKHNLSHVHLLVIPLGSGNDMAR
ALGWGKKYPGERFIKDAIKRINDTPVEQMVLRRLDVWRLAAHSDKPHVDN
DGVEHGARPLVCNYLSLGADAYVELRFNQMRWQNPEKHCSRLGNFKAHAI
VGLKYMCLPKSRKIYVSDHIETLLVDHQPVHIPPYLQAIIFLNIPSYGAG
SQPWGTIKSEHKKDDVDRSRKVTDMFVDDHRFEVIGLRSLKHFGTIRLFG
AHGVRMAQGSSMSLTLKSDATPFQVDGEPWEQHGGTVTLEPGNKVGVLRG
PIWTSSPKKRAKFNTKSNDINTSADEQDQQQSVAELDSDVPQPPPLPETN
DQVTQA*
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spliced messenger RNA

>Ggra6503.t1 ID=Ggra6503.t1|Name=Ggra6503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000074_pilon:560083..561303+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGTGATGAACATGATCGCGCTCGTGAACTGCTCCTCCGGCGGCAA
CATGGGCCGCGCCGTGCTGGAGCTGCTCAAGAACCAGATAGGCGACGAGA
ACGTCTTCGACATCAAGGCCGACAACGGCCCGGAGCGCGCGCTGCGTCTG
CGCGCGCTGCACTCGCAGCACCACCTCATCTGCATCGTGGCTGGCGGCGA
CGGTACCTTCTCGTGGGTGGCCAACGCCGTCGAGAAGCACAACTTGTCGC
ACGTGCATTTGCTCGTCATTCCGCTGGGCTCCGGCAACGACATGGCGCGC
GCGTTGGGCTGGGGGAAAAAGTATCCCGGCGAGCGCTTTATCAAGGATGC
TATCAAGAGAATTAATGACACCCCTGTGGAGCAGATGGTGTTGAGGCGAC
TGGATGTGTGGAGGCTTGCCGCGCACTCTGATAAACCGCACGTTGATAAC
GATGGCGTTGAGCATGGTGCCAGGCCTTTGGTGTGCAACTACCTCAGTCT
GGGCGCCGATGCGTACGTCGAGCTGCGCTTCAATCAGATGCGCTGGCAGA
ACCCAGAAAAGCATTGCAGCCGTCTGGGCAACTTTAAGGCGCACGCTATC
GTTGGGCTCAAGTACATGTGTTTGCCGAAGAGCCGCAAGATTTACGTATC
GGACCATATCGAAACGCTCCTAGTGGATCACCAACCGGTTCACATCCCCC
CCTATTTGCAGGCCATTATCTTCCTCAACATTCCCAGTTACGGTGCCGGC
AGTCAGCCGTGGGGTACTATCAAATCCGAGCACAAGAAAGACGATGTGGA
TCGCAGCCGTAAAGTCACGGACATGTTTGTCGATGACCACCGTTTCGAGG
TCATTGGTCTCAGAAGCCTCAAGCACTTTGGCACCATTCGTTTGTTTGGC
GCTCACGGTGTGCGAATGGCCCAAGGTTCAAGCATGTCCCTCACTCTCAA
GTCCGACGCCACACCGTTTCAGGTTGACGGCGAGCCTTGGGAACAACATG
GTGGCACCGTCACACTCGAACCGGGCAACAAGGTCGGTGTTCTTCGAGGT
CCTATCTGGACATCTTCCCCGAAGAAACGTGCCAAGTTCAACACAAAAAG
CAACGATATTAACACATCCGCTGACGAACAGGATCAACAACAGTCCGTTG
CGGAGCTCGACAGTGACGTCCCACAACCGCCACCGCTCCCCGAAACTAAC
GATCAGGTAACTCAGGCTTAA
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protein sequence of Ggra6503.t1

>Ggra6503.t1 ID=Ggra6503.t1|Name=Ggra6503.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MDVMNMIALVNCSSGGNMGRAVLELLKNQIGDENVFDIKADNGPERALRL
RALHSQHHLICIVAGGDGTFSWVANAVEKHNLSHVHLLVIPLGSGNDMAR
ALGWGKKYPGERFIKDAIKRINDTPVEQMVLRRLDVWRLAAHSDKPHVDN
DGVEHGARPLVCNYLSLGADAYVELRFNQMRWQNPEKHCSRLGNFKAHAI
VGLKYMCLPKSRKIYVSDHIETLLVDHQPVHIPPYLQAIIFLNIPSYGAG
SQPWGTIKSEHKKDDVDRSRKVTDMFVDDHRFEVIGLRSLKHFGTIRLFG
AHGVRMAQGSSMSLTLKSDATPFQVDGEPWEQHGGTVTLEPGNKVGVLRG
PIWTSSPKKRAKFNTKSNDINTSADEQDQQQSVAELDSDVPQPPPLPETN
DQVTQA*
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mRNA from alignment at tig00000074_pilon:560083..561303+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6503.t1 ID=Ggra6503.t1|Name=Ggra6503.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000074_pilon:560083..561303+ (Gracilaria gracilis GNS1m male)
ATGGACGTGATGAACATGATCGCGCTCGTGAACTGCTCCTCCGGCGGCAA
CATGGGCCGCGCCGTGCTGGAGCTGCTCAAGAACCAGATAGGCGACGAGA
ACGTCTTCGACATCAAGGCCGACAACGGCCCGGAGCGCGCGCTGCGTCTG
CGCGCGCTGCACTCGCAGCACCACCTCATCTGCATCGTGGCTGGCGGCGA
CGGTACCTTCTCGTGGGTGGCCAACGCCGTCGAGAAGCACAACTTGTCGC
ACGTGCATTTGCTCGTCATTCCGCTGGGCTCCGGCAACGACATGGCGCGC
GCGTTGGGCTGGGGGAAAAAGTATCCCGGCGAGCGCTTTATCAAGGATGC
TATCAAGAGAATTAATGACACCCCTGTGGAGCAGATGGTGTTGAGGCGAC
TGGATGTGTGGAGGCTTGCCGCGCACTCTGATAAACCGCACGTTGATAAC
GATGGCGTTGAGCATGGTGCCAGGCCTTTGGTGTGCAACTACCTCAGTCT
GGGCGCCGATGCGTACGTCGAGCTGCGCTTCAATCAGATGCGCTGGCAGA
ACCCAGAAAAGCATTGCAGCCGTCTGGGCAACTTTAAGGCGCACGCTATC
GTTGGGCTCAAGTACATGTGTTTGCCGAAGAGCCGCAAGATTTACGTATC
GGACCATATCGAAACGCTCCTAGTGGATCACCAACCGGTTCACATCCCCC
CCTATTTGCAGGCCATTATCTTCCTCAACATTCCCAGTTACGGTGCCGGC
AGTCAGCCGTGGGGTACTATCAAATCCGAGCACAAGAAAGACGATGTGGA
TCGCAGCCGTAAAGTCACGGACATGTTTGTCGATGACCACCGTTTCGAGG
TCATTGGTCTCAGAAGCCTCAAGCACTTTGGCACCATTCGTTTGTTTGGC
GCTCACGGTGTGCGAATGGCCCAAGGTTCAAGCATGTCCCTCACTCTCAA
GTCCGACGCCACACCGTTTCAGGTTGACGGCGAGCCTTGGGAACAACATG
GTGGCACCGTCACACTCGAACCGGGCAACAAGGTCGGTGTTCTTCGAGGT
CCTATCTGGACATCTTCCCCGAAGAAACGTGCCAAGTTCAACACAAAAAG
CAACGATATTAACACATCCGCTGACGAACAGGATCAACAACAGTCCGTTG
CGGAGCTCGACAGTGACGTCCCACAACCGCCACCGCTCCCCGAAACTAAC
GATCAGGTAACTCAGGCTTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:560083..561303+

>Ggra6503.t1 ID=Ggra6503.t1|Name=Ggra6503.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000074_pilon:560083..561303+ (Gracilaria gracilis GNS1m male)
ATGGACGTGATGAACATGATCGCGCTCGTGAACTGCTCCTCCGGCGGCAA
CATGGGCCGCGCCGTGCTGGAGCTGCTCAAGAACCAGATAGGCGACGAGA
ACGTCTTCGACATCAAGGCCGACAACGGCCCGGAGCGCGCGCTGCGTCTG
CGCGCGCTGCACTCGCAGCACCACCTCATCTGCATCGTGGCTGGCGGCGA
CGGTACCTTCTCGTGGGTGGCCAACGCCGTCGAGAAGCACAACTTGTCGC
ACGTGCATTTGCTCGTCATTCCGCTGGGCTCCGGCAACGACATGGCGCGC
GCGTTGGGCTGGGGGAAAAAGTATCCCGGCGAGCGCTTTATCAAGGATGC
TATCAAGAGAATTAATGACACCCCTGTGGAGCAGATGGTGTTGAGGCGAC
TGGATGTGTGGAGGCTTGCCGCGCACTCTGATAAACCGCACGTTGATAAC
GATGGCGTTGAGCATGGTGCCAGGCCTTTGGTGTGCAACTACCTCAGTCT
GGGCGCCGATGCGTACGTCGAGCTGCGCTTCAATCAGATGCGCTGGCAGA
ACCCAGAAAAGCATTGCAGCCGTCTGGGCAACTTTAAGGCGCACGCTATC
GTTGGGCTCAAGTACATGTGTTTGCCGAAGAGCCGCAAGATTTACGTATC
GGACCATATCGAAACGCTCCTAGTGGATCACCAACCGGTTCACATCCCCC
CCTATTTGCAGGCCATTATCTTCCTCAACATTCCCAGTTACGGTGCCGGC
AGTCAGCCGTGGGGTACTATCAAATCCGAGCACAAGAAAGACGATGTGGA
TCGCAGCCGTAAAGTCACGGACATGTTTGTCGATGACCACCGTTTCGAGG
TCATTGGTCTCAGAAGCCTCAAGCACTTTGGCACCATTCGTTTGTTTGGC
GCTCACGGTGTGCGAATGGCCCAAGGTTCAAGCATGTCCCTCACTCTCAA
GTCCGACGCCACACCGTTTCAGGTTGACGGCGAGCCTTGGGAACAACATG
GTGGCACCGTCACACTCGAACCGGGCAACAAGGTCGGTGTTCTTCGAGGT
CCTATCTGGACATCTTCCCCGAAGAAACGTGCCAAGTTCAACACAAAAAG
CAACGATATTAACACATCCGCTGACGAACAGGATCAACAACAGTCCGTTG
CGGAGCTCGACAGTGACGTCCCACAACCGCCACCGCTCCCCGAAACTAAC
GATCAGGTAACTCAGGCTTAA
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