Ggra6486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6486.t1
Unique NameGgra6486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:306709..308385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_1882
PFAMsCBS,DHH,DHHA1,PolyA_pol,PolyA_pol_RNAbd
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00078
KEGG koko:K00970,ko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,ko03018,map03013,map03018
Evalue2.25e-86
EggNOG OGsCOG0517@1|root,COG0617@1|root,COG0618@1|root,COG0517@2|Bacteria,COG0617@2|Bacteria,COG0618@2|Bacteria,1FZVS@1117|Cyanobacteria,1H9KM@1150|Oscillatoriales
EC2.7.7.19,2.7.7.72
DescriptionBelongs to the tRNA nucleotidyltransferase poly(A) polymerase family
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03016,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6486Ggra6486Gracilaria gracilis GNS1m malegenetig00000074_pilon 306709..308385 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6486.t1.stop1Ggra6486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 306709..306711 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6486.t1.CDS1Ggra6486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 306709..308385 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6486.t1.exon1Ggra6486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 306709..308385 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6486.t1.start1Ggra6486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 308383..308385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6486.t1Ggra6486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 306709..308385 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6486.t1 ID=Ggra6486.t1|Name=Ggra6486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=559bp
MKRLRVAFTAAPALAARLKRSFASRSPPPTPLLYVRACTTDHASRSAPPS
RSRRAKHSTPADGNGAPVKKDLDIVLTHSTADFDSLAAAVGLAKLRGPLT
LVVTPGGESPAVRRFLSLHRQLYKILTPQAVDPMRLRWVGIVDTMRSDRL
GVAADWPTYAEEVEVYDHHLGRQCDIENRNLRVVVEPVGAVATIICEKLR
DAAIELTPAEATLLALAIHSDTGSLTFEHTTSRDVEALAWLMSQGVIQRS
IAEFSHTMLTDEQQNALSTALANLERHSVNGLEVASLILSGGTFLKGMSA
VANDVLDIANVDVLILAYLNSRGRKAKRKALEQPHNASLSSPSPSPLSNS
NASAPDTVKQLSIIGRARARVDGIDFRSLFQPLGGGGHARAASASLKVTE
QRARQIVQQLVADASKQIPQPRPVSHFMSTDLVTVLPTSLISDVRALMAL
HGHQILPVVNNDLSLLGLISVQDVKLAERKRGYAAYSMPVAAWMHQNIIS
VSPDTPFYEAAKMVAEDTMGVLPIVDDGRLVGVISRMDVLVARRLVPENM
THNHRKWT*
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spliced messenger RNA

>Ggra6486.t1 ID=Ggra6486.t1|Name=Ggra6486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000074_pilon:306709..308385- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCCTCCGCGTCGCCTTCACCGCAGCGCCCGCGCTGGCCGCCCG
TCTCAAACGCTCGTTTGCGTCCCGTTCGCCGCCGCCCACGCCTTTGCTGT
ACGTACGGGCCTGCACCACTGACCACGCGTCGCGTTCCGCGCCACCGTCT
CGCTCGCGCCGCGCGAAACACTCGACGCCCGCCGACGGAAATGGCGCGCC
TGTGAAGAAGGACCTTGATATTGTGCTCACGCATTCTACCGCCGACTTCG
ACTCGCTGGCGGCTGCCGTGGGGCTCGCCAAGCTGCGAGGGCCGCTTACG
CTGGTCGTCACGCCCGGCGGGGAGTCGCCGGCCGTTCGACGCTTCTTGTC
GCTTCACAGACAGCTGTACAAGATTCTCACCCCGCAAGCAGTGGACCCCA
TGCGCTTGAGATGGGTTGGCATCGTTGATACTATGCGCTCCGATCGACTG
GGTGTGGCGGCCGACTGGCCCACGTACGCTGAAGAGGTGGAGGTGTATGA
CCATCACCTCGGTCGTCAATGCGACATTGAAAACCGCAACTTGCGCGTGG
TCGTGGAGCCTGTCGGCGCCGTTGCTACTATAATCTGTGAGAAGCTTCGC
GACGCCGCCATTGAACTCACGCCGGCGGAGGCCACTTTGTTGGCGCTTGC
CATTCATTCTGACACGGGCTCGCTCACGTTTGAGCACACCACTTCGCGCG
ACGTTGAGGCGCTGGCTTGGCTCATGTCTCAGGGCGTCATTCAGCGTTCC
ATCGCCGAGTTCTCGCACACCATGCTGACGGACGAGCAGCAAAACGCGCT
CAGCACGGCGCTGGCCAACCTGGAGAGGCACAGCGTGAACGGCTTGGAGG
TTGCTTCGTTGATTCTGAGCGGCGGGACGTTTTTGAAAGGCATGAGCGCG
GTGGCGAATGACGTGCTGGACATCGCCAACGTGGACGTTCTAATTCTGGC
GTACCTCAACTCGAGAGGGAGGAAGGCGAAGAGAAAAGCGCTTGAGCAGC
CGCACAACGCATCGCTGTCGTCGCCATCGCCGTCGCCGTTGTCAAACTCC
AATGCGTCGGCGCCGGACACGGTCAAGCAGCTGTCTATAATCGGGAGGGC
GCGAGCGCGCGTGGATGGAATCGATTTTCGCAGTTTGTTCCAACCGCTGG
GAGGTGGTGGACACGCACGTGCCGCGTCGGCGTCGCTCAAGGTTACGGAA
CAGAGGGCGCGTCAAATCGTGCAGCAGCTGGTGGCAGACGCCTCAAAGCA
AATTCCACAGCCGCGCCCGGTTTCCCACTTCATGAGCACCGATTTGGTAA
CTGTTTTACCAACGTCGCTGATCAGTGATGTAAGAGCGCTTATGGCGTTG
CACGGCCATCAGATACTTCCTGTCGTTAATAACGACCTGTCACTTCTCGG
GCTCATCTCCGTGCAGGATGTTAAGCTGGCTGAGAGAAAGAGGGGCTACG
CCGCCTATTCAATGCCGGTTGCTGCTTGGATGCACCAAAATATTATTAGT
GTGAGCCCTGACACTCCCTTTTATGAGGCTGCCAAAATGGTTGCTGAGGA
TACGATGGGAGTGCTGCCTATTGTGGATGATGGCCGGCTTGTGGGTGTTA
TAAGTCGCATGGATGTGTTGGTTGCGAGACGGCTTGTACCTGAGAACATG
ACTCATAATCATCGCAAATGGACCTGA
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protein sequence of Ggra6486.t1

>Ggra6486.t1 ID=Ggra6486.t1|Name=Ggra6486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=559bp
MKRLRVAFTAAPALAARLKRSFASRSPPPTPLLYVRACTTDHASRSAPPS
RSRRAKHSTPADGNGAPVKKDLDIVLTHSTADFDSLAAAVGLAKLRGPLT
LVVTPGGESPAVRRFLSLHRQLYKILTPQAVDPMRLRWVGIVDTMRSDRL
GVAADWPTYAEEVEVYDHHLGRQCDIENRNLRVVVEPVGAVATIICEKLR
DAAIELTPAEATLLALAIHSDTGSLTFEHTTSRDVEALAWLMSQGVIQRS
IAEFSHTMLTDEQQNALSTALANLERHSVNGLEVASLILSGGTFLKGMSA
VANDVLDIANVDVLILAYLNSRGRKAKRKALEQPHNASLSSPSPSPLSNS
NASAPDTVKQLSIIGRARARVDGIDFRSLFQPLGGGGHARAASASLKVTE
QRARQIVQQLVADASKQIPQPRPVSHFMSTDLVTVLPTSLISDVRALMAL
HGHQILPVVNNDLSLLGLISVQDVKLAERKRGYAAYSMPVAAWMHQNIIS
VSPDTPFYEAAKMVAEDTMGVLPIVDDGRLVGVISRMDVLVARRLVPENM
THNHRKWT*
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mRNA from alignment at tig00000074_pilon:306709..308385-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6486.t1 ID=Ggra6486.t1|Name=Ggra6486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00000074_pilon:306709..308385- (Gracilaria gracilis GNS1m male)
ATGAAGCGCCTCCGCGTCGCCTTCACCGCAGCGCCCGCGCTGGCCGCCCG
TCTCAAACGCTCGTTTGCGTCCCGTTCGCCGCCGCCCACGCCTTTGCTGT
ACGTACGGGCCTGCACCACTGACCACGCGTCGCGTTCCGCGCCACCGTCT
CGCTCGCGCCGCGCGAAACACTCGACGCCCGCCGACGGAAATGGCGCGCC
TGTGAAGAAGGACCTTGATATTGTGCTCACGCATTCTACCGCCGACTTCG
ACTCGCTGGCGGCTGCCGTGGGGCTCGCCAAGCTGCGAGGGCCGCTTACG
CTGGTCGTCACGCCCGGCGGGGAGTCGCCGGCCGTTCGACGCTTCTTGTC
GCTTCACAGACAGCTGTACAAGATTCTCACCCCGCAAGCAGTGGACCCCA
TGCGCTTGAGATGGGTTGGCATCGTTGATACTATGCGCTCCGATCGACTG
GGTGTGGCGGCCGACTGGCCCACGTACGCTGAAGAGGTGGAGGTGTATGA
CCATCACCTCGGTCGTCAATGCGACATTGAAAACCGCAACTTGCGCGTGG
TCGTGGAGCCTGTCGGCGCCGTTGCTACTATAATCTGTGAGAAGCTTCGC
GACGCCGCCATTGAACTCACGCCGGCGGAGGCCACTTTGTTGGCGCTTGC
CATTCATTCTGACACGGGCTCGCTCACGTTTGAGCACACCACTTCGCGCG
ACGTTGAGGCGCTGGCTTGGCTCATGTCTCAGGGCGTCATTCAGCGTTCC
ATCGCCGAGTTCTCGCACACCATGCTGACGGACGAGCAGCAAAACGCGCT
CAGCACGGCGCTGGCCAACCTGGAGAGGCACAGCGTGAACGGCTTGGAGG
TTGCTTCGTTGATTCTGAGCGGCGGGACGTTTTTGAAAGGCATGAGCGCG
GTGGCGAATGACGTGCTGGACATCGCCAACGTGGACGTTCTAATTCTGGC
GTACCTCAACTCGAGAGGGAGGAAGGCGAAGAGAAAAGCGCTTGAGCAGC
CGCACAACGCATCGCTGTCGTCGCCATCGCCGTCGCCGTTGTCAAACTCC
AATGCGTCGGCGCCGGACACGGTCAAGCAGCTGTCTATAATCGGGAGGGC
GCGAGCGCGCGTGGATGGAATCGATTTTCGCAGTTTGTTCCAACCGCTGG
GAGGTGGTGGACACGCACGTGCCGCGTCGGCGTCGCTCAAGGTTACGGAA
CAGAGGGCGCGTCAAATCGTGCAGCAGCTGGTGGCAGACGCCTCAAAGCA
AATTCCACAGCCGCGCCCGGTTTCCCACTTCATGAGCACCGATTTGGTAA
CTGTTTTACCAACGTCGCTGATCAGTGATGTAAGAGCGCTTATGGCGTTG
CACGGCCATCAGATACTTCCTGTCGTTAATAACGACCTGTCACTTCTCGG
GCTCATCTCCGTGCAGGATGTTAAGCTGGCTGAGAGAAAGAGGGGCTACG
CCGCCTATTCAATGCCGGTTGCTGCTTGGATGCACCAAAATATTATTAGT
GTGAGCCCTGACACTCCCTTTTATGAGGCTGCCAAAATGGTTGCTGAGGA
TACGATGGGAGTGCTGCCTATTGTGGATGATGGCCGGCTTGTGGGTGTTA
TAAGTCGCATGGATGTGTTGGTTGCGAGACGGCTTGTACCTGAGAACATG
ACTCATAATCATCGCAAATGGACCTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:306709..308385-

>Ggra6486.t1 ID=Ggra6486.t1|Name=Ggra6486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00000074_pilon:306709..308385- (Gracilaria gracilis GNS1m male)
ATGAAGCGCCTCCGCGTCGCCTTCACCGCAGCGCCCGCGCTGGCCGCCCG
TCTCAAACGCTCGTTTGCGTCCCGTTCGCCGCCGCCCACGCCTTTGCTGT
ACGTACGGGCCTGCACCACTGACCACGCGTCGCGTTCCGCGCCACCGTCT
CGCTCGCGCCGCGCGAAACACTCGACGCCCGCCGACGGAAATGGCGCGCC
TGTGAAGAAGGACCTTGATATTGTGCTCACGCATTCTACCGCCGACTTCG
ACTCGCTGGCGGCTGCCGTGGGGCTCGCCAAGCTGCGAGGGCCGCTTACG
CTGGTCGTCACGCCCGGCGGGGAGTCGCCGGCCGTTCGACGCTTCTTGTC
GCTTCACAGACAGCTGTACAAGATTCTCACCCCGCAAGCAGTGGACCCCA
TGCGCTTGAGATGGGTTGGCATCGTTGATACTATGCGCTCCGATCGACTG
GGTGTGGCGGCCGACTGGCCCACGTACGCTGAAGAGGTGGAGGTGTATGA
CCATCACCTCGGTCGTCAATGCGACATTGAAAACCGCAACTTGCGCGTGG
TCGTGGAGCCTGTCGGCGCCGTTGCTACTATAATCTGTGAGAAGCTTCGC
GACGCCGCCATTGAACTCACGCCGGCGGAGGCCACTTTGTTGGCGCTTGC
CATTCATTCTGACACGGGCTCGCTCACGTTTGAGCACACCACTTCGCGCG
ACGTTGAGGCGCTGGCTTGGCTCATGTCTCAGGGCGTCATTCAGCGTTCC
ATCGCCGAGTTCTCGCACACCATGCTGACGGACGAGCAGCAAAACGCGCT
CAGCACGGCGCTGGCCAACCTGGAGAGGCACAGCGTGAACGGCTTGGAGG
TTGCTTCGTTGATTCTGAGCGGCGGGACGTTTTTGAAAGGCATGAGCGCG
GTGGCGAATGACGTGCTGGACATCGCCAACGTGGACGTTCTAATTCTGGC
GTACCTCAACTCGAGAGGGAGGAAGGCGAAGAGAAAAGCGCTTGAGCAGC
CGCACAACGCATCGCTGTCGTCGCCATCGCCGTCGCCGTTGTCAAACTCC
AATGCGTCGGCGCCGGACACGGTCAAGCAGCTGTCTATAATCGGGAGGGC
GCGAGCGCGCGTGGATGGAATCGATTTTCGCAGTTTGTTCCAACCGCTGG
GAGGTGGTGGACACGCACGTGCCGCGTCGGCGTCGCTCAAGGTTACGGAA
CAGAGGGCGCGTCAAATCGTGCAGCAGCTGGTGGCAGACGCCTCAAAGCA
AATTCCACAGCCGCGCCCGGTTTCCCACTTCATGAGCACCGATTTGGTAA
CTGTTTTACCAACGTCGCTGATCAGTGATGTAAGAGCGCTTATGGCGTTG
CACGGCCATCAGATACTTCCTGTCGTTAATAACGACCTGTCACTTCTCGG
GCTCATCTCCGTGCAGGATGTTAAGCTGGCTGAGAGAAAGAGGGGCTACG
CCGCCTATTCAATGCCGGTTGCTGCTTGGATGCACCAAAATATTATTAGT
GTGAGCCCTGACACTCCCTTTTATGAGGCTGCCAAAATGGTTGCTGAGGA
TACGATGGGAGTGCTGCCTATTGTGGATGATGGCCGGCTTGTGGGTGTTA
TAAGTCGCATGGATGTGTTGGTTGCGAGACGGCTTGTACCTGAGAACATG
ACTCATAATCATCGCAAATGGACCTGA
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