Ggra6481.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6481.t1
Unique NameGgra6481.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:257389..258277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6481Ggra6481Gracilaria gracilis GNS1m malegenetig00000074_pilon 257389..258277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1Ggra6481.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 257389..258277 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1.stop1Ggra6481.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 257389..257391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1.CDS1Ggra6481.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 257389..258008 -
Ggra6481.t1.CDS2Ggra6481.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 258088..258277 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1.exon1Ggra6481.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 257389..258008 -
Ggra6481.t1.exon2Ggra6481.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 258088..258277 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1.intron1Ggra6481.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 258009..258087 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6481.t1.start1Ggra6481.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 258275..258277 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6481.t1 ID=Ggra6481.t1|Name=Ggra6481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MKQYTQNKNQANVIVEIDYYCDGTILSNSESQSASTLRVRFSNMKGRSTE
LHEVGIAPCVDSQDLIEASKVVIVMDEFINLPRISMIVANQPQERAFFCL
KHAESFMDCSLCEMLSRTRSDDMELVHQTVTQIPSSKFETGDVSKTISHQ
ITATKRRLPGTVATRLLAEDEKRALGDARHYLSSRSAHGYPPALAAFRGL
GSAPFLLYDVIAFDTLHVMDLGVYRILSDIAGEALGSDRNCLYSTTKAVP
MLDIAQPCRKPKIELFIVN*
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spliced messenger RNA

>Ggra6481.t1 ID=Ggra6481.t1|Name=Ggra6481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000074_pilon:257389..258277- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAATACACGCAGAACAAGAACCAAGCCAATGTCATCGTTGAAAT
TGACTACTATTGCGACGGTACGATTCTGTCAAATTCGGAGTCTCAGAGCG
CAAGTACACTTCGTGTGAGATTTAGCAATATGAAGGGCAGGTCTACTGAA
TTGCATGAGGTAGGGATTGCTCCCTGTGTTGATTCCCAAGACCTCATCGA
AGCCTCCAAAGTTGTGATAGTCATGGATGAGTTCATTAATCTTCCCCGAA
TTAGCATGATCGTCGCCAACCAGCCACAAGAAAGGGCATTCTTTTGCCTT
AAACATGCAGAAAGCTTTATGGACTGCTCACTCTGTGAGATGCTTTCCAG
AACTCGTTCTGATGATATGGAGCTGGTTCACCAAACTGTTACACAAATCC
CTTCATCGAAGTTTGAAACTGGTGATGTCAGCAAGACCATTAGCCATCAG
ATCACAGCTACGAAGCGAAGGCTCCCAGGTACAGTAGCAACTAGACTTCT
GGCTGAAGACGAAAAACGTGCCCTCGGAGATGCACGACATTATCTGAGTA
GTAGAAGTGCCCATGGATATCCCCCCGCATTGGCCGCGTTTAGAGGACTA
GGATCTGCCCCATTCCTGCTCTACGATGTGATTGCATTTGATACCTTGCA
TGTCATGGATCTGGGAGTGTATCGGATACTCTCGGACATTGCAGGTGAGG
CGCTAGGGAGTGACCGAAATTGCTTATACAGCACAACCAAGGCCGTTCCA
ATGCTTGATATTGCTCAACCCTGTCGAAAGCCAAAGATAGAGCTGTTTAT
CGTCAACTAA
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protein sequence of Ggra6481.t1

>Ggra6481.t1 ID=Ggra6481.t1|Name=Ggra6481.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MKQYTQNKNQANVIVEIDYYCDGTILSNSESQSASTLRVRFSNMKGRSTE
LHEVGIAPCVDSQDLIEASKVVIVMDEFINLPRISMIVANQPQERAFFCL
KHAESFMDCSLCEMLSRTRSDDMELVHQTVTQIPSSKFETGDVSKTISHQ
ITATKRRLPGTVATRLLAEDEKRALGDARHYLSSRSAHGYPPALAAFRGL
GSAPFLLYDVIAFDTLHVMDLGVYRILSDIAGEALGSDRNCLYSTTKAVP
MLDIAQPCRKPKIELFIVN*
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mRNA from alignment at tig00000074_pilon:257389..258277-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6481.t1 ID=Ggra6481.t1|Name=Ggra6481.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=889bp|location=Sequence derived from alignment at tig00000074_pilon:257389..258277- (Gracilaria gracilis GNS1m male)
ATGAAGCAATACACGCAGAACAAGAACCAAGCCAATGTCATCGTTGAAAT
TGACTACTATTGCGACGGTACGATTCTGTCAAATTCGGAGTCTCAGAGCG
CAAGTACACTTCGTGTGAGATTTAGCAATATGAAGGGCAGGTCTACTGAA
TTGCATGAGGTAGGGATTGCTCCCTGTGTTGATTCCCAAGGTATGGAACG
CTCACTGTTGGAGCTGCGGATAGAAAGGTTTCAGCTATTTCAAAACGTTC
CTGTTTCTGGCTCTAAAAGACCTCATCGAAGCCTCCAAAGTTGTGATAGT
CATGGATGAGTTCATTAATCTTCCCCGAATTAGCATGATCGTCGCCAACC
AGCCACAAGAAAGGGCATTCTTTTGCCTTAAACATGCAGAAAGCTTTATG
GACTGCTCACTCTGTGAGATGCTTTCCAGAACTCGTTCTGATGATATGGA
GCTGGTTCACCAAACTGTTACACAAATCCCTTCATCGAAGTTTGAAACTG
GTGATGTCAGCAAGACCATTAGCCATCAGATCACAGCTACGAAGCGAAGG
CTCCCAGGTACAGTAGCAACTAGACTTCTGGCTGAAGACGAAAAACGTGC
CCTCGGAGATGCACGACATTATCTGAGTAGTAGAAGTGCCCATGGATATC
CCCCCGCATTGGCCGCGTTTAGAGGACTAGGATCTGCCCCATTCCTGCTC
TACGATGTGATTGCATTTGATACCTTGCATGTCATGGATCTGGGAGTGTA
TCGGATACTCTCGGACATTGCAGGTGAGGCGCTAGGGAGTGACCGAAATT
GCTTATACAGCACAACCAAGGCCGTTCCAATGCTTGATATTGCTCAACCC
TGTCGAAAGCCAAAGATAGAGCTGTTTATCGTCAACTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:257389..258277-

>Ggra6481.t1 ID=Ggra6481.t1|Name=Ggra6481.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000074_pilon:257389..258277- (Gracilaria gracilis GNS1m male)
ATGAAGCAATACACGCAGAACAAGAACCAAGCCAATGTCATCGTTGAAAT
TGACTACTATTGCGACGGTACGATTCTGTCAAATTCGGAGTCTCAGAGCG
CAAGTACACTTCGTGTGAGATTTAGCAATATGAAGGGCAGGTCTACTGAA
TTGCATGAGGTAGGGATTGCTCCCTGTGTTGATTCCCAAGACCTCATCGA
AGCCTCCAAAGTTGTGATAGTCATGGATGAGTTCATTAATCTTCCCCGAA
TTAGCATGATCGTCGCCAACCAGCCACAAGAAAGGGCATTCTTTTGCCTT
AAACATGCAGAAAGCTTTATGGACTGCTCACTCTGTGAGATGCTTTCCAG
AACTCGTTCTGATGATATGGAGCTGGTTCACCAAACTGTTACACAAATCC
CTTCATCGAAGTTTGAAACTGGTGATGTCAGCAAGACCATTAGCCATCAG
ATCACAGCTACGAAGCGAAGGCTCCCAGGTACAGTAGCAACTAGACTTCT
GGCTGAAGACGAAAAACGTGCCCTCGGAGATGCACGACATTATCTGAGTA
GTAGAAGTGCCCATGGATATCCCCCCGCATTGGCCGCGTTTAGAGGACTA
GGATCTGCCCCATTCCTGCTCTACGATGTGATTGCATTTGATACCTTGCA
TGTCATGGATCTGGGAGTGTATCGGATACTCTCGGACATTGCAGGTGAGG
CGCTAGGGAGTGACCGAAATTGCTTATACAGCACAACCAAGGCCGTTCCA
ATGCTTGATATTGCTCAACCCTGTCGAAAGCCAAAGATAGAGCTGTTTAT
CGTCAACTAA
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