Ggra6479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6479.t1
Unique NameGgra6479.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:235352..236749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue1.43e-57
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6479Ggra6479Gracilaria gracilis GNS1m malegenetig00000074_pilon 235352..236749 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6479.t1.stop1Ggra6479.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 235352..235354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6479.t1.CDS1Ggra6479.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 235352..236749 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6479.t1.exon1Ggra6479.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 235352..236749 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6479.t1.start1Ggra6479.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 236747..236749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6479.t1Ggra6479.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 235352..236749 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6479.t1 ID=Ggra6479.t1|Name=Ggra6479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=466bp
MNPFGAVGFTSNKYQEQNRATNLPKGVNLSRSELFYPILSRRGLGSCRET
TQSLSTMQPSFLLQTAFIQGLLFFPTFIRAGIPTFSYIGKSSHTPLSGSN
LPPHIHQQRWTLENVTRLSDATEEATIAFFVQISESSLPLTPRLLARIHH
PGNFYALHFDKKIPAHRVVSVSSDIRKESRYSNVFIMPREPVTYRGVTMV
LNNMAAISHLLGMGHWDYFINLSGSDYPLVSPEVPRKILAMPHVRDQRSN
FFIVSPKEQWSQTMHYRFERIAVDTALGMSEKSDDSKLVILDQTTPLFSK
INYEFVKGEGWLILTREACKFMTSSSYARKMLLSMAFSQDASEHFYVSLF
WNHPDFNKTIVPHSLRTVYWNIDGKSSGQHPYTIDQVRNPDGSYTVWKWL
RTSPHWFARKFSIPDSDIMDWIDNEMSGVGKEVNEAAVDESTRRMEGHLH
WLYGMMSPAEDNSAR*
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spliced messenger RNA

>Ggra6479.t1 ID=Ggra6479.t1|Name=Ggra6479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000074_pilon:235352..236749- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTTTTGGTGCAGTTGGTTTCACTTCCAACAAGTACCAGGAACA
GAACCGAGCTACAAACTTACCCAAGGGAGTCAACCTGTCGCGTTCTGAAC
TTTTCTATCCTATCCTTTCGAGAAGGGGGCTCGGCAGTTGTCGTGAAACA
ACTCAATCTCTTTCAACAATGCAGCCTTCATTTCTTCTACAAACCGCGTT
TATTCAGGGGTTGTTGTTCTTCCCTACGTTTATAAGAGCTGGTATTCCCA
CGTTTTCTTACATCGGGAAATCGAGTCACACTCCGCTATCAGGAAGTAAT
CTTCCTCCGCATATTCACCAACAACGTTGGACTCTGGAGAATGTAACACG
ACTGTCTGACGCGACAGAAGAAGCAACCATTGCCTTCTTCGTGCAAATCT
CCGAATCTTCTCTACCACTTACCCCTCGCTTGCTAGCCCGGATCCACCAC
CCAGGTAACTTTTATGCTTTGCATTTCGACAAGAAAATCCCGGCTCATCG
TGTGGTCTCTGTATCCTCCGATATAAGGAAGGAATCGCGGTATTCGAATG
TTTTCATTATGCCACGTGAGCCTGTCACATATCGCGGTGTGACAATGGTG
TTGAATAACATGGCTGCCATTTCCCATCTCCTTGGCATGGGGCATTGGGA
TTACTTCATCAACCTCTCTGGTTCTGACTATCCTCTTGTATCGCCAGAAG
TCCCGCGAAAAATTCTGGCAATGCCTCACGTGCGTGACCAGCGTTCCAAC
TTCTTCATCGTCTCGCCAAAGGAACAGTGGTCTCAAACAATGCACTACCG
TTTTGAAAGAATTGCAGTCGATACTGCTTTGGGCATGTCTGAAAAGTCAG
ATGACTCAAAGCTTGTAATTCTGGACCAAACCACCCCGTTGTTCTCGAAG
ATCAATTACGAATTCGTAAAAGGTGAAGGTTGGCTGATTTTAACCCGTGA
AGCTTGCAAGTTTATGACCTCCAGTTCGTACGCACGGAAGATGTTACTAT
CCATGGCTTTTTCGCAAGATGCTTCGGAGCACTTTTACGTATCTTTGTTT
TGGAACCATCCAGATTTCAATAAGACCATCGTTCCCCACTCTCTACGTAC
AGTGTACTGGAATATCGATGGGAAAAGTTCAGGACAACATCCCTACACTA
TTGATCAGGTTCGCAATCCGGACGGAAGCTATACTGTGTGGAAATGGCTC
CGAACCTCTCCTCACTGGTTTGCACGAAAGTTCTCGATCCCAGACAGTGA
CATAATGGATTGGATAGATAATGAAATGAGCGGAGTCGGCAAAGAGGTCA
ATGAGGCTGCTGTTGATGAAAGCACAAGGAGAATGGAAGGCCATCTTCAC
TGGTTGTATGGGATGATGTCACCTGCAGAAGACAATTCTGCACGGTGA
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protein sequence of Ggra6479.t1

>Ggra6479.t1 ID=Ggra6479.t1|Name=Ggra6479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=466bp
MNPFGAVGFTSNKYQEQNRATNLPKGVNLSRSELFYPILSRRGLGSCRET
TQSLSTMQPSFLLQTAFIQGLLFFPTFIRAGIPTFSYIGKSSHTPLSGSN
LPPHIHQQRWTLENVTRLSDATEEATIAFFVQISESSLPLTPRLLARIHH
PGNFYALHFDKKIPAHRVVSVSSDIRKESRYSNVFIMPREPVTYRGVTMV
LNNMAAISHLLGMGHWDYFINLSGSDYPLVSPEVPRKILAMPHVRDQRSN
FFIVSPKEQWSQTMHYRFERIAVDTALGMSEKSDDSKLVILDQTTPLFSK
INYEFVKGEGWLILTREACKFMTSSSYARKMLLSMAFSQDASEHFYVSLF
WNHPDFNKTIVPHSLRTVYWNIDGKSSGQHPYTIDQVRNPDGSYTVWKWL
RTSPHWFARKFSIPDSDIMDWIDNEMSGVGKEVNEAAVDESTRRMEGHLH
WLYGMMSPAEDNSAR*
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mRNA from alignment at tig00000074_pilon:235352..236749-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6479.t1 ID=Ggra6479.t1|Name=Ggra6479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000074_pilon:235352..236749- (Gracilaria gracilis GNS1m male)
ATGAATCCTTTTGGTGCAGTTGGTTTCACTTCCAACAAGTACCAGGAACA
GAACCGAGCTACAAACTTACCCAAGGGAGTCAACCTGTCGCGTTCTGAAC
TTTTCTATCCTATCCTTTCGAGAAGGGGGCTCGGCAGTTGTCGTGAAACA
ACTCAATCTCTTTCAACAATGCAGCCTTCATTTCTTCTACAAACCGCGTT
TATTCAGGGGTTGTTGTTCTTCCCTACGTTTATAAGAGCTGGTATTCCCA
CGTTTTCTTACATCGGGAAATCGAGTCACACTCCGCTATCAGGAAGTAAT
CTTCCTCCGCATATTCACCAACAACGTTGGACTCTGGAGAATGTAACACG
ACTGTCTGACGCGACAGAAGAAGCAACCATTGCCTTCTTCGTGCAAATCT
CCGAATCTTCTCTACCACTTACCCCTCGCTTGCTAGCCCGGATCCACCAC
CCAGGTAACTTTTATGCTTTGCATTTCGACAAGAAAATCCCGGCTCATCG
TGTGGTCTCTGTATCCTCCGATATAAGGAAGGAATCGCGGTATTCGAATG
TTTTCATTATGCCACGTGAGCCTGTCACATATCGCGGTGTGACAATGGTG
TTGAATAACATGGCTGCCATTTCCCATCTCCTTGGCATGGGGCATTGGGA
TTACTTCATCAACCTCTCTGGTTCTGACTATCCTCTTGTATCGCCAGAAG
TCCCGCGAAAAATTCTGGCAATGCCTCACGTGCGTGACCAGCGTTCCAAC
TTCTTCATCGTCTCGCCAAAGGAACAGTGGTCTCAAACAATGCACTACCG
TTTTGAAAGAATTGCAGTCGATACTGCTTTGGGCATGTCTGAAAAGTCAG
ATGACTCAAAGCTTGTAATTCTGGACCAAACCACCCCGTTGTTCTCGAAG
ATCAATTACGAATTCGTAAAAGGTGAAGGTTGGCTGATTTTAACCCGTGA
AGCTTGCAAGTTTATGACCTCCAGTTCGTACGCACGGAAGATGTTACTAT
CCATGGCTTTTTCGCAAGATGCTTCGGAGCACTTTTACGTATCTTTGTTT
TGGAACCATCCAGATTTCAATAAGACCATCGTTCCCCACTCTCTACGTAC
AGTGTACTGGAATATCGATGGGAAAAGTTCAGGACAACATCCCTACACTA
TTGATCAGGTTCGCAATCCGGACGGAAGCTATACTGTGTGGAAATGGCTC
CGAACCTCTCCTCACTGGTTTGCACGAAAGTTCTCGATCCCAGACAGTGA
CATAATGGATTGGATAGATAATGAAATGAGCGGAGTCGGCAAAGAGGTCA
ATGAGGCTGCTGTTGATGAAAGCACAAGGAGAATGGAAGGCCATCTTCAC
TGGTTGTATGGGATGATGTCACCTGCAGAAGACAATTCTGCACGGTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:235352..236749-

>Ggra6479.t1 ID=Ggra6479.t1|Name=Ggra6479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000074_pilon:235352..236749- (Gracilaria gracilis GNS1m male)
ATGAATCCTTTTGGTGCAGTTGGTTTCACTTCCAACAAGTACCAGGAACA
GAACCGAGCTACAAACTTACCCAAGGGAGTCAACCTGTCGCGTTCTGAAC
TTTTCTATCCTATCCTTTCGAGAAGGGGGCTCGGCAGTTGTCGTGAAACA
ACTCAATCTCTTTCAACAATGCAGCCTTCATTTCTTCTACAAACCGCGTT
TATTCAGGGGTTGTTGTTCTTCCCTACGTTTATAAGAGCTGGTATTCCCA
CGTTTTCTTACATCGGGAAATCGAGTCACACTCCGCTATCAGGAAGTAAT
CTTCCTCCGCATATTCACCAACAACGTTGGACTCTGGAGAATGTAACACG
ACTGTCTGACGCGACAGAAGAAGCAACCATTGCCTTCTTCGTGCAAATCT
CCGAATCTTCTCTACCACTTACCCCTCGCTTGCTAGCCCGGATCCACCAC
CCAGGTAACTTTTATGCTTTGCATTTCGACAAGAAAATCCCGGCTCATCG
TGTGGTCTCTGTATCCTCCGATATAAGGAAGGAATCGCGGTATTCGAATG
TTTTCATTATGCCACGTGAGCCTGTCACATATCGCGGTGTGACAATGGTG
TTGAATAACATGGCTGCCATTTCCCATCTCCTTGGCATGGGGCATTGGGA
TTACTTCATCAACCTCTCTGGTTCTGACTATCCTCTTGTATCGCCAGAAG
TCCCGCGAAAAATTCTGGCAATGCCTCACGTGCGTGACCAGCGTTCCAAC
TTCTTCATCGTCTCGCCAAAGGAACAGTGGTCTCAAACAATGCACTACCG
TTTTGAAAGAATTGCAGTCGATACTGCTTTGGGCATGTCTGAAAAGTCAG
ATGACTCAAAGCTTGTAATTCTGGACCAAACCACCCCGTTGTTCTCGAAG
ATCAATTACGAATTCGTAAAAGGTGAAGGTTGGCTGATTTTAACCCGTGA
AGCTTGCAAGTTTATGACCTCCAGTTCGTACGCACGGAAGATGTTACTAT
CCATGGCTTTTTCGCAAGATGCTTCGGAGCACTTTTACGTATCTTTGTTT
TGGAACCATCCAGATTTCAATAAGACCATCGTTCCCCACTCTCTACGTAC
AGTGTACTGGAATATCGATGGGAAAAGTTCAGGACAACATCCCTACACTA
TTGATCAGGTTCGCAATCCGGACGGAAGCTATACTGTGTGGAAATGGCTC
CGAACCTCTCCTCACTGGTTTGCACGAAAGTTCTCGATCCCAGACAGTGA
CATAATGGATTGGATAGATAATGAAATGAGCGGAGTCGGCAAAGAGGTCA
ATGAGGCTGCTGTTGATGAAAGCACAAGGAGAATGGAAGGCCATCTTCAC
TGGTTGTATGGGATGATGTCACCTGCAGAAGACAATTCTGCACGGTGA
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