Ggra6474.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6474.t1
Unique NameGgra6474.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:224771..225400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI3G57060.1
PFAMsFcf2
Max annot lvl35493|Streptophyta
Evalue2.95e-20
EggNOG OGsKOG3100@1|root,KOG3100@2759|Eukaryota,37TS2@33090|Viridiplantae,3GETA@35493|Streptophyta,3KYIS@4447|Liliopsida,3I4YW@38820|Poales
DescriptionFcf2 pre-rRNA processing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6474Ggra6474Gracilaria gracilis GNS1m malegenetig00000074_pilon 224771..225400 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6474.t1.start1Ggra6474.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 224771..224773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6474.t1.CDS1Ggra6474.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 224771..225400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6474.t1.exon1Ggra6474.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 224771..225400 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6474.t1.stop1Ggra6474.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 225398..225400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6474.t1Ggra6474.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 224771..225400 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6474.t1 ID=Ggra6474.t1|Name=Ggra6474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MASKDRNLEKTRPIDPRGLTLPPTSHLNDTTDLDKDEGFVKQDLDFLRPS
RKRRGRKGTQNTYQPDWSTLEEYSPKGEAPPVRNRDEDEDWHDMPVADLT
PELQRDLRVVENRQYLDPKRFYKSSGTGRKKGQLPSRVQVGTILSGAHEF
YSGRLLKKDRRARIIDQVLSSEKTVQYTTSRFRKLQSDRMSNRRIVDPAC
KKRRHRKRR*
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spliced messenger RNA

>Ggra6474.t1 ID=Ggra6474.t1|Name=Ggra6474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000074_pilon:224771..225400+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGTAAGGACAGAAACTTGGAGAAGACTCGGCCAATTGATCCAAG
AGGCCTCACACTTCCCCCAACCAGCCACCTCAACGACACTACGGACCTTG
ACAAAGATGAAGGATTTGTGAAACAAGATCTAGACTTTCTTCGCCCTTCT
CGTAAGCGACGGGGGCGAAAAGGGACTCAAAATACTTATCAACCAGATTG
GAGCACACTAGAGGAGTATTCACCGAAAGGAGAAGCGCCACCGGTGCGCA
ATCGCGATGAAGATGAAGACTGGCATGATATGCCTGTAGCAGACCTTACA
CCCGAGCTTCAGCGTGACTTGCGAGTTGTTGAAAATCGTCAATATTTGGA
TCCTAAACGCTTTTACAAGTCATCTGGTACTGGAAGAAAGAAAGGTCAAC
TACCGTCGCGAGTTCAAGTTGGTACTATTCTATCAGGAGCTCACGAATTT
TACTCTGGCCGGTTATTGAAGAAAGATAGACGCGCGAGAATTATTGATCA
AGTTCTTTCAAGCGAGAAAACTGTCCAGTATACCACCAGCAGATTCCGCA
AGTTACAGAGTGACCGAATGAGCAACCGGCGCATTGTAGATCCTGCATGC
AAAAAAAGGAGGCATCGGAAGAGGCGATAG
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protein sequence of Ggra6474.t1

>Ggra6474.t1 ID=Ggra6474.t1|Name=Ggra6474.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MASKDRNLEKTRPIDPRGLTLPPTSHLNDTTDLDKDEGFVKQDLDFLRPS
RKRRGRKGTQNTYQPDWSTLEEYSPKGEAPPVRNRDEDEDWHDMPVADLT
PELQRDLRVVENRQYLDPKRFYKSSGTGRKKGQLPSRVQVGTILSGAHEF
YSGRLLKKDRRARIIDQVLSSEKTVQYTTSRFRKLQSDRMSNRRIVDPAC
KKRRHRKRR*
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mRNA from alignment at tig00000074_pilon:224771..225400+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6474.t1 ID=Ggra6474.t1|Name=Ggra6474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000074_pilon:224771..225400+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTAAGGACAGAAACTTGGAGAAGACTCGGCCAATTGATCCAAG
AGGCCTCACACTTCCCCCAACCAGCCACCTCAACGACACTACGGACCTTG
ACAAAGATGAAGGATTTGTGAAACAAGATCTAGACTTTCTTCGCCCTTCT
CGTAAGCGACGGGGGCGAAAAGGGACTCAAAATACTTATCAACCAGATTG
GAGCACACTAGAGGAGTATTCACCGAAAGGAGAAGCGCCACCGGTGCGCA
ATCGCGATGAAGATGAAGACTGGCATGATATGCCTGTAGCAGACCTTACA
CCCGAGCTTCAGCGTGACTTGCGAGTTGTTGAAAATCGTCAATATTTGGA
TCCTAAACGCTTTTACAAGTCATCTGGTACTGGAAGAAAGAAAGGTCAAC
TACCGTCGCGAGTTCAAGTTGGTACTATTCTATCAGGAGCTCACGAATTT
TACTCTGGCCGGTTATTGAAGAAAGATAGACGCGCGAGAATTATTGATCA
AGTTCTTTCAAGCGAGAAAACTGTCCAGTATACCACCAGCAGATTCCGCA
AGTTACAGAGTGACCGAATGAGCAACCGGCGCATTGTAGATCCTGCATGC
AAAAAAAGGAGGCATCGGAAGAGGCGATAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:224771..225400+

>Ggra6474.t1 ID=Ggra6474.t1|Name=Ggra6474.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000074_pilon:224771..225400+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTAAGGACAGAAACTTGGAGAAGACTCGGCCAATTGATCCAAG
AGGCCTCACACTTCCCCCAACCAGCCACCTCAACGACACTACGGACCTTG
ACAAAGATGAAGGATTTGTGAAACAAGATCTAGACTTTCTTCGCCCTTCT
CGTAAGCGACGGGGGCGAAAAGGGACTCAAAATACTTATCAACCAGATTG
GAGCACACTAGAGGAGTATTCACCGAAAGGAGAAGCGCCACCGGTGCGCA
ATCGCGATGAAGATGAAGACTGGCATGATATGCCTGTAGCAGACCTTACA
CCCGAGCTTCAGCGTGACTTGCGAGTTGTTGAAAATCGTCAATATTTGGA
TCCTAAACGCTTTTACAAGTCATCTGGTACTGGAAGAAAGAAAGGTCAAC
TACCGTCGCGAGTTCAAGTTGGTACTATTCTATCAGGAGCTCACGAATTT
TACTCTGGCCGGTTATTGAAGAAAGATAGACGCGCGAGAATTATTGATCA
AGTTCTTTCAAGCGAGAAAACTGTCCAGTATACCACCAGCAGATTCCGCA
AGTTACAGAGTGACCGAATGAGCAACCGGCGCATTGTAGATCCTGCATGC
AAAAAAAGGAGGCATCGGAAGAGGCGATAG
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