Ggra6471.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6471.t1
Unique Name	Ggra6471.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000074_pilon	contig	tig00000074_pilon:214904..216454 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6471	Ggra6471	Gracilaria gracilis GNS1m male	gene	tig00000074_pilon 214904..216454 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6471.t1.stop1	Ggra6471.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000074_pilon 214904..214906 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6471.t1.CDS1	Ggra6471.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000074_pilon 214904..216454 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6471.t1.exon1	Ggra6471.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000074_pilon 214904..216454 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6471.t1.start1	Ggra6471.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000074_pilon 216452..216454 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6471.t1	Ggra6471.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000074_pilon 214904..216454 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000074_pilon:214904..216454-
coding sequence from alignment at tig00000074_pilon:214904..216454-

mRNA sequence

>Ggra6471.t1 ID=Ggra6471.t1|Name=Ggra6471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp
MDRLTDVDNYASSTYNHIARHRRTGAPTDDLRERLRMTWAFFKLSLAMNI
PGLSTWRNWSEGSPAYTLPIALYYQLPSYVRGLRESIKVSRRCWSMNAWR
NSFSAALELLQQRHLDCISLAQLLFDSMFDEDTIEPITTQAHRLCLYDST
SGSFTTDLKPHTVRQYMTEHVPAFCFSYKHTRKDRNDIDIDQFRLFTMAS
KISQILQRPRLLFWSDVIGETRGNWAQQGIEPYLMMPTVRVVSNELDPHI
KNSFWMHVERQAAAVRPGMLTFDEDNMEFVAEKSTFLMSTFSGDLNKARW
NLAKLVLTPAMFHLKTLWEKDRIRILDYAVKMIEPKLRQYPTVDDVLMLH
GVEGLTRFLGCVLQNLPLFFRDMPEKMIETSELPCPWCGIEEMLPAVRIV
DDASRYILNQFGRDQSNVLVLSTNEDVTELLIGPYRVLEAWTNIPGSILR
MHVKNYEETDDSISGSVLRYRVARPEEEELIRSGDPVHKEILFDKMSFIS
VKGECLANSDIERYSR*

spliced messenger RNA

>Ggra6471.t1 ID=Ggra6471.t1|Name=Ggra6471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000074_pilon:214904..216454- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGGCTCACTGATGTGGACAACTATGCCTCTTCCACCTACAATCA
CATTGCGCGACATCGTCGCACGGGGGCGCCCACCGATGATTTACGAGAGC
GTCTTCGCATGACCTGGGCTTTCTTCAAACTTTCTTTAGCCATGAACATA
CCTGGCTTGTCCACATGGAGAAACTGGAGTGAAGGTTCACCCGCATACAC
TTTGCCCATTGCCTTGTATTACCAGTTGCCCTCCTACGTACGTGGCCTGC
GCGAATCCATTAAAGTTTCCCGGAGATGCTGGTCCATGAATGCCTGGCGA
AATTCCTTCTCCGCTGCTCTTGAACTTCTGCAACAGCGACATCTGGATTG
CATCTCGTTGGCGCAGCTGCTGTTTGATTCCATGTTTGACGAAGACACAA
TCGAGCCCATTACCACCCAAGCCCACCGTCTATGTTTGTATGACTCTACC
AGTGGCTCTTTCACTACCGACCTCAAGCCGCACACAGTCCGTCAGTACAT
GACTGAGCATGTCCCCGCGTTTTGCTTTTCTTACAAACATACGCGAAAGG
ATCGCAATGACATCGACATAGACCAGTTCCGTCTCTTCACCATGGCATCC
AAGATCTCCCAGATACTCCAGAGACCTCGTTTGTTGTTCTGGTCTGATGT
AATCGGGGAAACTCGCGGCAATTGGGCCCAACAAGGCATCGAGCCCTATC
TAATGATGCCCACCGTTCGGGTCGTTAGCAATGAACTGGATCCACATATC
AAGAACAGTTTCTGGATGCATGTTGAACGACAAGCTGCTGCTGTGCGCCC
TGGTATGCTCACCTTTGACGAGGACAACATGGAGTTTGTGGCCGAGAAGA
GCACGTTTCTCATGTCTACGTTTTCCGGAGATCTCAATAAAGCTCGGTGG
AACTTAGCAAAGCTAGTTTTGACGCCCGCAATGTTTCATCTGAAGACGCT
GTGGGAAAAAGATAGGATTCGAATATTAGATTATGCAGTTAAGATGATTG
AGCCGAAACTTCGACAGTACCCAACTGTAGATGATGTTTTGATGCTGCAT
GGGGTGGAAGGACTCACCCGGTTCCTCGGATGTGTGCTCCAGAATTTGCC
TTTGTTCTTCCGCGACATGCCCGAAAAGATGATTGAGACCTCAGAACTGC
CATGTCCGTGGTGTGGTATAGAAGAAATGCTTCCTGCCGTAAGGATTGTT
GACGATGCATCGAGGTACATTCTAAACCAGTTCGGAAGAGATCAGTCCAA
TGTTCTTGTTCTGTCCACTAATGAAGACGTGACAGAGCTACTGATCGGAC
CGTACCGAGTGCTGGAAGCATGGACTAACATTCCTGGATCCATTCTCAGG
ATGCATGTGAAGAATTATGAGGAGACAGACGACTCCATATCTGGAAGTGT
GCTTCGATACCGTGTTGCTCGTCCTGAAGAGGAAGAGTTGATAAGATCCG
GTGATCCTGTGCACAAGGAAATCTTGTTTGACAAAATGAGCTTCATTTCA
GTCAAAGGAGAGTGTCTCGCCAACAGCGACATAGAAAGGTATTCACGTTA
G

protein sequence of Ggra6471.t1

>Ggra6471.t1 ID=Ggra6471.t1|Name=Ggra6471.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MDRLTDVDNYASSTYNHIARHRRTGAPTDDLRERLRMTWAFFKLSLAMNI
PGLSTWRNWSEGSPAYTLPIALYYQLPSYVRGLRESIKVSRRCWSMNAWR
NSFSAALELLQQRHLDCISLAQLLFDSMFDEDTIEPITTQAHRLCLYDST
SGSFTTDLKPHTVRQYMTEHVPAFCFSYKHTRKDRNDIDIDQFRLFTMAS
KISQILQRPRLLFWSDVIGETRGNWAQQGIEPYLMMPTVRVVSNELDPHI
KNSFWMHVERQAAAVRPGMLTFDEDNMEFVAEKSTFLMSTFSGDLNKARW
NLAKLVLTPAMFHLKTLWEKDRIRILDYAVKMIEPKLRQYPTVDDVLMLH
GVEGLTRFLGCVLQNLPLFFRDMPEKMIETSELPCPWCGIEEMLPAVRIV
DDASRYILNQFGRDQSNVLVLSTNEDVTELLIGPYRVLEAWTNIPGSILR
MHVKNYEETDDSISGSVLRYRVARPEEEELIRSGDPVHKEILFDKMSFIS
VKGECLANSDIERYSR*

mRNA from alignment at tig00000074_pilon:214904..216454-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6471.t1 ID=Ggra6471.t1|Name=Ggra6471.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000074_pilon:214904..216454- (Gracilaria gracilis GNS1m male)
ATGGACAGGCTCACTGATGTGGACAACTATGCCTCTTCCACCTACAATCA
CATTGCGCGACATCGTCGCACGGGGGCGCCCACCGATGATTTACGAGAGC
GTCTTCGCATGACCTGGGCTTTCTTCAAACTTTCTTTAGCCATGAACATA
CCTGGCTTGTCCACATGGAGAAACTGGAGTGAAGGTTCACCCGCATACAC
TTTGCCCATTGCCTTGTATTACCAGTTGCCCTCCTACGTACGTGGCCTGC
GCGAATCCATTAAAGTTTCCCGGAGATGCTGGTCCATGAATGCCTGGCGA
AATTCCTTCTCCGCTGCTCTTGAACTTCTGCAACAGCGACATCTGGATTG
CATCTCGTTGGCGCAGCTGCTGTTTGATTCCATGTTTGACGAAGACACAA
TCGAGCCCATTACCACCCAAGCCCACCGTCTATGTTTGTATGACTCTACC
AGTGGCTCTTTCACTACCGACCTCAAGCCGCACACAGTCCGTCAGTACAT
GACTGAGCATGTCCCCGCGTTTTGCTTTTCTTACAAACATACGCGAAAGG
ATCGCAATGACATCGACATAGACCAGTTCCGTCTCTTCACCATGGCATCC
AAGATCTCCCAGATACTCCAGAGACCTCGTTTGTTGTTCTGGTCTGATGT
AATCGGGGAAACTCGCGGCAATTGGGCCCAACAAGGCATCGAGCCCTATC
TAATGATGCCCACCGTTCGGGTCGTTAGCAATGAACTGGATCCACATATC
AAGAACAGTTTCTGGATGCATGTTGAACGACAAGCTGCTGCTGTGCGCCC
TGGTATGCTCACCTTTGACGAGGACAACATGGAGTTTGTGGCCGAGAAGA
GCACGTTTCTCATGTCTACGTTTTCCGGAGATCTCAATAAAGCTCGGTGG
AACTTAGCAAAGCTAGTTTTGACGCCCGCAATGTTTCATCTGAAGACGCT
GTGGGAAAAAGATAGGATTCGAATATTAGATTATGCAGTTAAGATGATTG
AGCCGAAACTTCGACAGTACCCAACTGTAGATGATGTTTTGATGCTGCAT
GGGGTGGAAGGACTCACCCGGTTCCTCGGATGTGTGCTCCAGAATTTGCC
TTTGTTCTTCCGCGACATGCCCGAAAAGATGATTGAGACCTCAGAACTGC
CATGTCCGTGGTGTGGTATAGAAGAAATGCTTCCTGCCGTAAGGATTGTT
GACGATGCATCGAGGTACATTCTAAACCAGTTCGGAAGAGATCAGTCCAA
TGTTCTTGTTCTGTCCACTAATGAAGACGTGACAGAGCTACTGATCGGAC
CGTACCGAGTGCTGGAAGCATGGACTAACATTCCTGGATCCATTCTCAGG
ATGCATGTGAAGAATTATGAGGAGACAGACGACTCCATATCTGGAAGTGT
GCTTCGATACCGTGTTGCTCGTCCTGAAGAGGAAGAGTTGATAAGATCCG
GTGATCCTGTGCACAAGGAAATCTTGTTTGACAAAATGAGCTTCATTTCA
GTCAAAGGAGAGTGTCTCGCCAACAGCGACATAGAAAGGTATTCACGTTA
G

Coding sequence (CDS) from alignment at tig00000074_pilon:214904..216454-

>Ggra6471.t1 ID=Ggra6471.t1|Name=Ggra6471.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000074_pilon:214904..216454- (Gracilaria gracilis GNS1m male)
ATGGACAGGCTCACTGATGTGGACAACTATGCCTCTTCCACCTACAATCA
CATTGCGCGACATCGTCGCACGGGGGCGCCCACCGATGATTTACGAGAGC
GTCTTCGCATGACCTGGGCTTTCTTCAAACTTTCTTTAGCCATGAACATA
CCTGGCTTGTCCACATGGAGAAACTGGAGTGAAGGTTCACCCGCATACAC
TTTGCCCATTGCCTTGTATTACCAGTTGCCCTCCTACGTACGTGGCCTGC
GCGAATCCATTAAAGTTTCCCGGAGATGCTGGTCCATGAATGCCTGGCGA
AATTCCTTCTCCGCTGCTCTTGAACTTCTGCAACAGCGACATCTGGATTG
CATCTCGTTGGCGCAGCTGCTGTTTGATTCCATGTTTGACGAAGACACAA
TCGAGCCCATTACCACCCAAGCCCACCGTCTATGTTTGTATGACTCTACC
AGTGGCTCTTTCACTACCGACCTCAAGCCGCACACAGTCCGTCAGTACAT
GACTGAGCATGTCCCCGCGTTTTGCTTTTCTTACAAACATACGCGAAAGG
ATCGCAATGACATCGACATAGACCAGTTCCGTCTCTTCACCATGGCATCC
AAGATCTCCCAGATACTCCAGAGACCTCGTTTGTTGTTCTGGTCTGATGT
AATCGGGGAAACTCGCGGCAATTGGGCCCAACAAGGCATCGAGCCCTATC
TAATGATGCCCACCGTTCGGGTCGTTAGCAATGAACTGGATCCACATATC
AAGAACAGTTTCTGGATGCATGTTGAACGACAAGCTGCTGCTGTGCGCCC
TGGTATGCTCACCTTTGACGAGGACAACATGGAGTTTGTGGCCGAGAAGA
GCACGTTTCTCATGTCTACGTTTTCCGGAGATCTCAATAAAGCTCGGTGG
AACTTAGCAAAGCTAGTTTTGACGCCCGCAATGTTTCATCTGAAGACGCT
GTGGGAAAAAGATAGGATTCGAATATTAGATTATGCAGTTAAGATGATTG
AGCCGAAACTTCGACAGTACCCAACTGTAGATGATGTTTTGATGCTGCAT
GGGGTGGAAGGACTCACCCGGTTCCTCGGATGTGTGCTCCAGAATTTGCC
TTTGTTCTTCCGCGACATGCCCGAAAAGATGATTGAGACCTCAGAACTGC
CATGTCCGTGGTGTGGTATAGAAGAAATGCTTCCTGCCGTAAGGATTGTT
GACGATGCATCGAGGTACATTCTAAACCAGTTCGGAAGAGATCAGTCCAA
TGTTCTTGTTCTGTCCACTAATGAAGACGTGACAGAGCTACTGATCGGAC
CGTACCGAGTGCTGGAAGCATGGACTAACATTCCTGGATCCATTCTCAGG
ATGCATGTGAAGAATTATGAGGAGACAGACGACTCCATATCTGGAAGTGT
GCTTCGATACCGTGTTGCTCGTCCTGAAGAGGAAGAGTTGATAAGATCCG
GTGATCCTGTGCACAAGGAAATCTTGTTTGACAAAATGAGCTTCATTTCA
GTCAAAGGAGAGTGTCTCGCCAACAGCGACATAGAAAGGTATTCACGTTA
G