Ggra6470.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6470.t1
Unique NameGgra6470.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:210676..212988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI5G24930.1
PFAMsMoCF_biosynth,MoeA_C,MoeA_N
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC03462
KEGG koko:K15376
KEGG ReactionR09726,R09735
KEGG Pathwayko00790,ko01100,ko04727,map00790,map01100,map04727
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006464,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0016491,GO:0016661,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019693,GO:0023052,GO:0030151,GO:0032324,GO:0032870,GO:0034641,GO:0036211,GO:0042040,GO:0042221,GO:0042278,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046039,GO:0046128,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0055086,GO:0055114,GO:0061598,GO:0061599,GO:0065007,GO:0070566,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0072521,GO:0090407,GO:1901068,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
Evalue2.89e-58
EggNOG OGsCOG0303@1|root,KOG2371@2759|Eukaryota,37MHI@33090|Viridiplantae,3G7K1@35493|Streptophyta,3KUTG@4447|Liliopsida,3I2RF@38820|Poales
EC2.10.1.1,2.7.7.75
DescriptionMoeA C-terminal region (domain IV)
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6470Ggra6470Gracilaria gracilis GNS1m malegenetig00000074_pilon 210676..212988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1Ggra6470.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 210676..212988 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1.stop1Ggra6470.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 210676..210678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1.CDS1Ggra6470.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 210676..210849 -
Ggra6470.t1.CDS2Ggra6470.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 210934..211090 -
Ggra6470.t1.CDS3Ggra6470.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 211192..212274 -
Ggra6470.t1.CDS4Ggra6470.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000074_pilon 212774..212988 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1.exon1Ggra6470.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 210676..210849 -
Ggra6470.t1.exon2Ggra6470.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 210934..211090 -
Ggra6470.t1.exon3Ggra6470.t1.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 211192..212274 -
Ggra6470.t1.exon4Ggra6470.t1.exon4Gracilaria gracilis GNS1m maleexontig00000074_pilon 212774..212988 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1.intron1Ggra6470.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 210850..210933 -
Ggra6470.t1.intron2Ggra6470.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 211091..211191 -
Ggra6470.t1.intron3Ggra6470.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000074_pilon 212275..212773 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6470.t1.start1Ggra6470.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 212986..212988 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6470.t1 ID=Ggra6470.t1|Name=Ggra6470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MRHSATGELLMVETALMSGSGSAQLKRCGPHRQASELDALLPDWKALRDG
EVRKDVGNDEDDGSGGRKMMITALFVLRITNFAVKSLLFRKDSSQRTAVP
LDDFLLLISERHASARKTNKAFAKPCTEDFPSTPSEFFSHRLEGPLSSPA
SYVATMAPSPERSRYPLVPMDHALEKIAATLSALPVTSVPTTHALHYLLA
VDVHASRPHPPFRASIKDGYAVTIPLAPPLRVTASSHAGSTASTRITPGT
AAYVATGAPVPEGADAVVMVENCLCEGDQLTFAKQLDLEQGHDIREIGCD
VAAGELVLSAGTYLGAAEIGILASCCITSVEVYKRPVIGVFSSGDEILDV
DNLPELMPYGSIIDCNRPMLLASVQEALPFCTPLDLGVMPDSESIVTEAL
LEAIEKCHTSLPPVEYPWENEIISNQYWRTLPRCFVCFHLAVAVAARKLA
GWSGESVKGVRVDVSLAHDIKLDTQRPEYHRVTLQHIPERGYVGTSTGRQ
ASSRLLSTRSADALLMLPKGEGLLSAGSTVRALLLAHFMYSS*
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spliced messenger RNA

>Ggra6470.t1 ID=Ggra6470.t1|Name=Ggra6470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000074_pilon:210676..212988- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCACTCTGCGACAGGAGAGCTGCTCATGGTAGAAACAGCTCTAAT
GAGCGGCAGCGGCTCCGCACAGCTGAAGCGCTGTGGGCCTCATAGGCAGG
CCAGCGAACTAGACGCGCTTCTTCCCGATTGGAAGGCGCTGCGGGACGGT
GAGGTGAGGAAGGACGTGGGTAACGACGAAGACGACGGCTCTGGCGGAAG
AAAGATGATGATAACTGCCTTGTTCGTGCTTCGAATCACCAACTTTGCGG
TGAAGAGCTTGTTATTCAGGAAGGATTCGTCTCAGAGAACCGCAGTACCG
CTAGACGACTTTTTGCTCCTTATCAGTGAGCGTCACGCCAGCGCGAGGAA
AACCAACAAGGCTTTTGCAAAGCCTTGCACTGAGGATTTTCCGTCAACGC
CCTCGGAGTTTTTCAGCCACCGACTTGAAGGACCATTGTCGTCACCTGCG
TCGTATGTTGCAACAATGGCTCCATCTCCCGAACGCTCGCGATACCCTCT
TGTTCCAATGGACCACGCTCTGGAGAAGATAGCCGCCACACTTTCAGCTC
TGCCAGTTACGTCGGTGCCGACAACACACGCTCTTCATTACCTACTCGCT
GTTGATGTCCATGCATCCCGCCCACACCCCCCGTTTCGTGCCTCCATCAA
AGATGGATATGCCGTCACCATACCACTCGCTCCACCCCTTAGAGTAACAG
CATCGTCCCATGCAGGATCGACTGCTTCTACCAGAATAACTCCTGGTACT
GCAGCGTATGTTGCAACAGGCGCACCCGTCCCGGAGGGCGCAGATGCTGT
TGTCATGGTAGAAAACTGCTTGTGTGAAGGAGATCAACTCACGTTTGCCA
AACAGTTAGACTTAGAACAAGGCCATGACATTCGCGAGATCGGATGTGAT
GTGGCAGCGGGTGAGCTGGTGCTCTCAGCAGGCACCTATCTTGGAGCGGC
TGAGATCGGTATTCTTGCCAGCTGTTGTATAACATCCGTTGAAGTATACA
AGCGTCCAGTTATCGGAGTGTTTTCGAGTGGTGATGAGATTCTAGACGTA
GACAACCTGCCAGAGTTAATGCCGTACGGTTCAATAATTGACTGCAATCG
ACCTATGCTACTTGCTTCCGTCCAGGAAGCTCTTCCGTTTTGCACACCAC
TTGATCTCGGTGTCATGCCAGATAGCGAATCGATCGTAACAGAAGCGCTT
CTTGAGGCAATAGAGAAGTGCCACACGTCATTACCACCGGTGGAGTATCC
ATGGGAAAACGAGATTATATCAAACCAGTATTGGAGAACATTGCCACGCT
GCTTTGTTTGTTTCCACCTCGCCGTCGCAGTAGCCGCCAGAAAACTTGCT
GGATGGAGCGGGGAGAGTGTGAAAGGCGTTCGAGTGGATGTATCCCTTGC
ACACGATATTAAGCTTGATACGCAAAGACCAGAGTATCATCGAGTTACAC
TACAGCATATTCCTGAACGGGGCTATGTTGGCACTTCAACAGGGAGGCAG
GCTAGCTCACGATTGCTTTCTACAAGGTCTGCGGATGCGCTTCTGATGTT
GCCGAAGGGAGAGGGTTTGCTTTCGGCCGGGTCTACGGTGAGAGCGTTAC
TGTTGGCTCACTTCATGTACTCTAGTTAA
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protein sequence of Ggra6470.t1

>Ggra6470.t1 ID=Ggra6470.t1|Name=Ggra6470.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MRHSATGELLMVETALMSGSGSAQLKRCGPHRQASELDALLPDWKALRDG
EVRKDVGNDEDDGSGGRKMMITALFVLRITNFAVKSLLFRKDSSQRTAVP
LDDFLLLISERHASARKTNKAFAKPCTEDFPSTPSEFFSHRLEGPLSSPA
SYVATMAPSPERSRYPLVPMDHALEKIAATLSALPVTSVPTTHALHYLLA
VDVHASRPHPPFRASIKDGYAVTIPLAPPLRVTASSHAGSTASTRITPGT
AAYVATGAPVPEGADAVVMVENCLCEGDQLTFAKQLDLEQGHDIREIGCD
VAAGELVLSAGTYLGAAEIGILASCCITSVEVYKRPVIGVFSSGDEILDV
DNLPELMPYGSIIDCNRPMLLASVQEALPFCTPLDLGVMPDSESIVTEAL
LEAIEKCHTSLPPVEYPWENEIISNQYWRTLPRCFVCFHLAVAVAARKLA
GWSGESVKGVRVDVSLAHDIKLDTQRPEYHRVTLQHIPERGYVGTSTGRQ
ASSRLLSTRSADALLMLPKGEGLLSAGSTVRALLLAHFMYSS*
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mRNA from alignment at tig00000074_pilon:210676..212988-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6470.t1 ID=Ggra6470.t1|Name=Ggra6470.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2313bp|location=Sequence derived from alignment at tig00000074_pilon:210676..212988- (Gracilaria gracilis GNS1m male)
ATGCGGCACTCTGCGACAGGAGAGCTGCTCATGGTAGAAACAGCTCTAAT
GAGCGGCAGCGGCTCCGCACAGCTGAAGCGCTGTGGGCCTCATAGGCAGG
CCAGCGAACTAGACGCGCTTCTTCCCGATTGGAAGGCGCTGCGGGACGGT
GAGGTGAGGAAGGACGTGGGTAACGACGAAGACGACGGCTCTGGCGGAAG
AAAGATGATGATAACGTGCGCGAGGTGCAAGCTGCCAGTTTGTTGGGCCG
AAGGCACATTGGTGTTTCACTCGGCTTGCTCGACGTTGTGCATCATCGGA
CCAGTTGCAGTTTGCTTGTCGCAGCGTCTGTAAACCGCAACGCGGCAGTT
TCCCCCCACATGCACTCGACTTGCAAAACGTTTCGCACAATCTCAACGTT
TCCACGTGTATCTTATGGCATTTCATTCATGGCATTACAGTATTTATCGG
TCTGTTCAAGAGACTGCTGTTGTCCGCAACTCAGCGGCGCTGACACGCTG
ATCCCCCCGCGAGTCGCGGTCCCTATATATACTCAAAGAGTACCGTTGGT
ACTACCCTTGTAGATGAGTGGGGGGGTGGAGATTGCGTGAGCGAAGTCTT
CGGCACTGATCTCTTGCGTAAACTTTACCGAGCGCACGCCAGGCGGACGC
TACATATACATCCCACAGTGGTCCAACAACCGTTCCCGAATATTCCTTAT
CGTGCGCTTGTAAGTGCCTTGTTCGTGCTTCGAATCACCAACTTTGCGGT
GAAGAGCTTGTTATTCAGGAAGGATTCGTCTCAGAGAACCGCAGTACCGC
TAGACGACTTTTTGCTCCTTATCAGTGAGCGTCACGCCAGCGCGAGGAAA
ACCAACAAGGCTTTTGCAAAGCCTTGCACTGAGGATTTTCCGTCAACGCC
CTCGGAGTTTTTCAGCCACCGACTTGAAGGACCATTGTCGTCACCTGCGT
CGTATGTTGCAACAATGGCTCCATCTCCCGAACGCTCGCGATACCCTCTT
GTTCCAATGGACCACGCTCTGGAGAAGATAGCCGCCACACTTTCAGCTCT
GCCAGTTACGTCGGTGCCGACAACACACGCTCTTCATTACCTACTCGCTG
TTGATGTCCATGCATCCCGCCCACACCCCCCGTTTCGTGCCTCCATCAAA
GATGGATATGCCGTCACCATACCACTCGCTCCACCCCTTAGAGTAACAGC
ATCGTCCCATGCAGGATCGACTGCTTCTACCAGAATAACTCCTGGTACTG
CAGCGTATGTTGCAACAGGCGCACCCGTCCCGGAGGGCGCAGATGCTGTT
GTCATGGTAGAAAACTGCTTGTGTGAAGGAGATCAACTCACGTTTGCCAA
ACAGTTAGACTTAGAACAAGGCCATGACATTCGCGAGATCGGATGTGATG
TGGCAGCGGGTGAGCTGGTGCTCTCAGCAGGCACCTATCTTGGAGCGGCT
GAGATCGGTATTCTTGCCAGCTGTTGTATAACATCCGTTGAAGTATACAA
GCGTCCAGTTATCGGAGTGTTTTCGAGTGGTGATGAGATTCTAGACGTAG
ACAACCTGCCAGAGTTAATGCCGTACGGTTCAATAATTGACTGCAATCGA
CCTATGCTACTTGCTTCCGTCCAGGAAGCTCTTCCGTTTTGCACACCACT
TGATCTCGGTGTCATGCCAGATAGCGAATCGATCGTAACAGAAGCGCTTC
TTGAGGCAATAGAGAAGTGCCACACGTCATTACCACCGGTGGAGTATCCA
TGGGAAAACGAGATTATATCAAACCAGTATTGGAGAACATTGCCACGGTA
CATTTTGGACGCGTATTAATGAAACCTGGAAAGCCGCTTACATATGCCAC
CATGTCAGAAAACAGATGTTTTATGGCATTACCTGGAAACCCAGTCAGCT
GCTTTGTTTGTTTCCACCTCGCCGTCGCAGTAGCCGCCAGAAAACTTGCT
GGATGGAGCGGGGAGAGTGTGAAAGGCGTTCGAGTGGATGTATCCCTTGC
ACACGATATTAAGCTTGATACGCAAAGACCAGAGTATCATCGAGTTACAC
TACAGGTATGTTATTCGTACTAGAAACATTCCGGACTACATTGTATGCAC
GCTGCAGAACTAACTGACGTCTTCTCTTGCATTCAAAAGCATATTCCTGA
ACGGGGCTATGTTGGCACTTCAACAGGGAGGCAGGCTAGCTCACGATTGC
TTTCTACAAGGTCTGCGGATGCGCTTCTGATGTTGCCGAAGGGAGAGGGT
TTGCTTTCGGCCGGGTCTACGGTGAGAGCGTTACTGTTGGCTCACTTCAT
GTACTCTAGTTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:210676..212988-

>Ggra6470.t1 ID=Ggra6470.t1|Name=Ggra6470.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000074_pilon:210676..212988- (Gracilaria gracilis GNS1m male)
ATGCGGCACTCTGCGACAGGAGAGCTGCTCATGGTAGAAACAGCTCTAAT
GAGCGGCAGCGGCTCCGCACAGCTGAAGCGCTGTGGGCCTCATAGGCAGG
CCAGCGAACTAGACGCGCTTCTTCCCGATTGGAAGGCGCTGCGGGACGGT
GAGGTGAGGAAGGACGTGGGTAACGACGAAGACGACGGCTCTGGCGGAAG
AAAGATGATGATAACTGCCTTGTTCGTGCTTCGAATCACCAACTTTGCGG
TGAAGAGCTTGTTATTCAGGAAGGATTCGTCTCAGAGAACCGCAGTACCG
CTAGACGACTTTTTGCTCCTTATCAGTGAGCGTCACGCCAGCGCGAGGAA
AACCAACAAGGCTTTTGCAAAGCCTTGCACTGAGGATTTTCCGTCAACGC
CCTCGGAGTTTTTCAGCCACCGACTTGAAGGACCATTGTCGTCACCTGCG
TCGTATGTTGCAACAATGGCTCCATCTCCCGAACGCTCGCGATACCCTCT
TGTTCCAATGGACCACGCTCTGGAGAAGATAGCCGCCACACTTTCAGCTC
TGCCAGTTACGTCGGTGCCGACAACACACGCTCTTCATTACCTACTCGCT
GTTGATGTCCATGCATCCCGCCCACACCCCCCGTTTCGTGCCTCCATCAA
AGATGGATATGCCGTCACCATACCACTCGCTCCACCCCTTAGAGTAACAG
CATCGTCCCATGCAGGATCGACTGCTTCTACCAGAATAACTCCTGGTACT
GCAGCGTATGTTGCAACAGGCGCACCCGTCCCGGAGGGCGCAGATGCTGT
TGTCATGGTAGAAAACTGCTTGTGTGAAGGAGATCAACTCACGTTTGCCA
AACAGTTAGACTTAGAACAAGGCCATGACATTCGCGAGATCGGATGTGAT
GTGGCAGCGGGTGAGCTGGTGCTCTCAGCAGGCACCTATCTTGGAGCGGC
TGAGATCGGTATTCTTGCCAGCTGTTGTATAACATCCGTTGAAGTATACA
AGCGTCCAGTTATCGGAGTGTTTTCGAGTGGTGATGAGATTCTAGACGTA
GACAACCTGCCAGAGTTAATGCCGTACGGTTCAATAATTGACTGCAATCG
ACCTATGCTACTTGCTTCCGTCCAGGAAGCTCTTCCGTTTTGCACACCAC
TTGATCTCGGTGTCATGCCAGATAGCGAATCGATCGTAACAGAAGCGCTT
CTTGAGGCAATAGAGAAGTGCCACACGTCATTACCACCGGTGGAGTATCC
ATGGGAAAACGAGATTATATCAAACCAGTATTGGAGAACATTGCCACGCT
GCTTTGTTTGTTTCCACCTCGCCGTCGCAGTAGCCGCCAGAAAACTTGCT
GGATGGAGCGGGGAGAGTGTGAAAGGCGTTCGAGTGGATGTATCCCTTGC
ACACGATATTAAGCTTGATACGCAAAGACCAGAGTATCATCGAGTTACAC
TACAGCATATTCCTGAACGGGGCTATGTTGGCACTTCAACAGGGAGGCAG
GCTAGCTCACGATTGCTTTCTACAAGGTCTGCGGATGCGCTTCTGATGTT
GCCGAAGGGAGAGGGTTTGCTTTCGGCCGGGTCTACGGTGAGAGCGTTAC
TGTTGGCTCACTTCATGTACTCTAGTTAA
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