Ggra6469.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6469.t1
Unique NameGgra6469.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:209030..209452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6469Ggra6469Gracilaria gracilis GNS1m malegenetig00000074_pilon 209030..209452 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6469.t1.start1Ggra6469.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 209030..209032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6469.t1.CDS1Ggra6469.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 209030..209452 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6469.t1.exon1Ggra6469.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 209030..209452 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6469.t1.stop1Ggra6469.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 209450..209452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6469.t1Ggra6469.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 209030..209452 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6469.t1 ID=Ggra6469.t1|Name=Ggra6469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MSIYNLLNPDGRNSAGPHANVPSSSSSSAASHSTANATDDPSKEEQLRQK
RKIQSEKKRQWRRNLTPEQKERRQLLDAQRKREQRLNQTPEQRAEARKKD
AARKAAKRRLVKEQMEKEKKQGGTASGSASNNTSRSPNAN*
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spliced messenger RNA

>Ggra6469.t1 ID=Ggra6469.t1|Name=Ggra6469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000074_pilon:209030..209452+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTTACAACCTGCTCAACCCAGATGGTCGCAATTCTGCTGGCCC
ACATGCCAATGTTCCGTCTTCGTCGAGTTCTTCCGCCGCATCCCACTCGA
CGGCAAACGCAACTGATGACCCTTCAAAAGAAGAACAGCTTCGCCAGAAG
CGCAAAATTCAGTCCGAGAAGAAACGTCAGTGGCGTCGCAACCTCACTCC
GGAGCAGAAAGAACGACGCCAGCTCTTGGACGCTCAACGTAAACGAGAGC
AACGCTTGAATCAAACTCCCGAGCAACGTGCGGAGGCACGTAAGAAAGAT
GCGGCCCGCAAGGCAGCCAAACGTCGTCTGGTGAAAGAGCAGATGGAAAA
GGAGAAGAAACAAGGTGGCACGGCATCCGGGTCCGCCTCTAACAACACAT
CTCGATCTCCTAACGCGAATTAA
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protein sequence of Ggra6469.t1

>Ggra6469.t1 ID=Ggra6469.t1|Name=Ggra6469.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MSIYNLLNPDGRNSAGPHANVPSSSSSSAASHSTANATDDPSKEEQLRQK
RKIQSEKKRQWRRNLTPEQKERRQLLDAQRKREQRLNQTPEQRAEARKKD
AARKAAKRRLVKEQMEKEKKQGGTASGSASNNTSRSPNAN*
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mRNA from alignment at tig00000074_pilon:209030..209452+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6469.t1 ID=Ggra6469.t1|Name=Ggra6469.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000074_pilon:209030..209452+ (Gracilaria gracilis GNS1m male)
ATGAGCATTTACAACCTGCTCAACCCAGATGGTCGCAATTCTGCTGGCCC
ACATGCCAATGTTCCGTCTTCGTCGAGTTCTTCCGCCGCATCCCACTCGA
CGGCAAACGCAACTGATGACCCTTCAAAAGAAGAACAGCTTCGCCAGAAG
CGCAAAATTCAGTCCGAGAAGAAACGTCAGTGGCGTCGCAACCTCACTCC
GGAGCAGAAAGAACGACGCCAGCTCTTGGACGCTCAACGTAAACGAGAGC
AACGCTTGAATCAAACTCCCGAGCAACGTGCGGAGGCACGTAAGAAAGAT
GCGGCCCGCAAGGCAGCCAAACGTCGTCTGGTGAAAGAGCAGATGGAAAA
GGAGAAGAAACAAGGTGGCACGGCATCCGGGTCCGCCTCTAACAACACAT
CTCGATCTCCTAACGCGAATTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:209030..209452+

>Ggra6469.t1 ID=Ggra6469.t1|Name=Ggra6469.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000074_pilon:209030..209452+ (Gracilaria gracilis GNS1m male)
ATGAGCATTTACAACCTGCTCAACCCAGATGGTCGCAATTCTGCTGGCCC
ACATGCCAATGTTCCGTCTTCGTCGAGTTCTTCCGCCGCATCCCACTCGA
CGGCAAACGCAACTGATGACCCTTCAAAAGAAGAACAGCTTCGCCAGAAG
CGCAAAATTCAGTCCGAGAAGAAACGTCAGTGGCGTCGCAACCTCACTCC
GGAGCAGAAAGAACGACGCCAGCTCTTGGACGCTCAACGTAAACGAGAGC
AACGCTTGAATCAAACTCCCGAGCAACGTGCGGAGGCACGTAAGAAAGAT
GCGGCCCGCAAGGCAGCCAAACGTCGTCTGGTGAAAGAGCAGATGGAAAA
GGAGAAGAAACAAGGTGGCACGGCATCCGGGTCCGCCTCTAACAACACAT
CTCGATCTCCTAACGCGAATTAA
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