Ggra6466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6466.t1
Unique NameGgra6466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:196126..197592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001746819.1
Preferred nameUMPS
PFAMsOMPdecase,Pribosyltran
Max annot lvl33154|Opisthokonta
KEGG rclassRC00063,RC00409,RC00611
KEGG koko:K01591,ko:K13421
KEGG ReactionR00965,R01870,R08231
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000909,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004588,GO:0004590,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0006996,GO:0007033,GO:0007040,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009314,GO:0009405,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0014070,GO:0016043,GO:0016477,GO:0016740,GO:0016757,GO:0016763,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019860,GO:0019953,GO:0022414,GO:0022610,GO:0030447,GO:0030582,GO:0030584,GO:0031012,GO:0032501,GO:0032502,GO:0032504,GO:0034404,GO:0034641,GO:0034654,GO:0035239,GO:0035295,GO:0040007,GO:0040008,GO:0040011,GO:0040014,GO:0040018,GO:0042221,GO:0042455,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044182,GO:0044205,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044406,GO:0044419,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0044706,GO:0045927,GO:0046049,GO:0046107,GO:0046108,GO:0046109,GO:0046112,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0048513,GO:0048518,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048598,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051179,GO:0051239,GO:0051240,GO:0051674,GO:0051704,GO:0055086,GO:0055123,GO:0060378,GO:0061458,GO:0062039,GO:0062040,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0075259,GO:0080171,GO:0090407,GO:0090727,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue3e-165
EggNOG OGsCOG0461@1|root,KOG1377@2759|Eukaryota,38EAF@33154|Opisthokonta
EC2.4.2.10,4.1.1.23
Descriptionorotidine-5'-phosphate decarboxylase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6466Ggra6466Gracilaria gracilis GNS1m malegenetig00000074_pilon 196126..197592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6466.t1.start1Ggra6466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 196126..196128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6466.t1.CDS1Ggra6466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 196126..197592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6466.t1.exon1Ggra6466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 196126..197592 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6466.t1.stop1Ggra6466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 197590..197592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6466.t1Ggra6466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 196126..197592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6466.t1 ID=Ggra6466.t1|Name=Ggra6466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=489bp
MTVQESKADANERQKNIILKLHEVDAFKFGEFTLKSGIKSPIYIDLRVSI
SYPELLSQIADELLKTVSDSEYDIICGVPYTALPFATAMSLASTKPMVMR
RKEVKNYGTKKIIEGKFLKDQTCLVVEDLVTSGLSVQETVEPLTKEGLLV
KDVVVLLDRQQGARENLKSRGLNLHSAFTLTAVLDVLLENQRIEKDVKDM
VLKFIKENQVSQNLKSSSVVPTTSVSYEEKAAKMENPVGRRLLELMATKK
TNLAVSADVTTKAELFELAEAVGPEICLLKTHADIVEDWDRDTGTALTEI
AKRLNFLLFEDRKFADIGNTVHHQAVGGVHTICKWADIINAHSVPGPGVI
SGLEKAHESVRESKERPMGLLLLAEMSSKGNLASDLSDYRTKTIEMGKEA
KRFVFGFISMGKVADDSFVYMTPGVKLAPGVDGLGQQYLTPDVVISENCS
DVIIVGRGVYQADDKLKAAKAYRLAGWKAYEKRCSGVK*
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spliced messenger RNA

>Ggra6466.t1 ID=Ggra6466.t1|Name=Ggra6466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000074_pilon:196126..197592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGCAAGAATCTAAAGCCGATGCGAATGAACGGCAAAAGAACAT
AATTCTTAAACTTCATGAAGTAGATGCTTTCAAGTTTGGAGAATTCACCC
TCAAGTCTGGGATAAAGTCCCCTATCTACATTGACTTACGAGTCTCTATT
TCATATCCAGAACTGCTGTCTCAGATAGCCGATGAGCTTCTGAAAACCGT
CTCCGACTCTGAGTATGATATAATTTGTGGGGTGCCTTACACGGCGCTTC
CATTTGCTACTGCAATGAGTCTCGCGTCCACAAAACCCATGGTTATGCGA
CGAAAAGAAGTGAAGAATTACGGTACTAAGAAAATTATAGAAGGGAAGTT
CCTCAAAGACCAGACTTGTCTCGTCGTCGAAGACTTAGTAACAAGCGGGC
TAAGTGTACAGGAGACTGTAGAACCTCTTACAAAGGAAGGCTTGCTTGTG
AAGGATGTGGTAGTGCTCCTCGACAGACAGCAGGGAGCTCGCGAGAATCT
GAAGTCACGAGGTCTTAACTTGCACTCTGCTTTTACCTTAACTGCAGTTC
TAGATGTTCTGTTGGAAAACCAACGGATAGAAAAGGATGTAAAGGACATG
GTTTTGAAATTTATCAAAGAAAACCAGGTCTCCCAGAATCTAAAGTCTAG
TTCGGTGGTACCCACAACCAGCGTTTCCTATGAGGAAAAAGCTGCGAAGA
TGGAGAATCCGGTTGGCCGTCGTTTATTGGAACTCATGGCTACAAAGAAA
ACAAATCTCGCAGTCTCTGCCGATGTGACTACAAAGGCTGAACTCTTCGA
ATTGGCGGAAGCAGTAGGTCCGGAAATCTGTCTCTTGAAAACCCATGCTG
ACATCGTTGAAGACTGGGATCGTGATACTGGTACTGCTCTAACCGAAATC
GCAAAACGTTTGAACTTCTTGTTGTTTGAGGACAGAAAATTCGCAGATAT
CGGGAATACTGTCCATCATCAAGCAGTTGGCGGTGTCCACACAATTTGCA
AGTGGGCGGACATCATTAATGCGCATTCCGTACCTGGGCCCGGAGTAATC
TCAGGGCTTGAGAAAGCCCATGAATCAGTTCGCGAATCTAAAGAAAGACC
CATGGGTTTGCTCCTGCTGGCGGAAATGAGCAGCAAGGGAAATTTGGCTT
CTGACTTGTCCGATTACCGAACCAAAACTATTGAGATGGGGAAGGAAGCG
AAACGTTTTGTGTTTGGCTTCATAAGTATGGGGAAAGTGGCCGATGACAG
TTTTGTCTATATGACTCCAGGAGTGAAGCTAGCACCTGGAGTTGATGGAC
TCGGACAGCAATACCTGACGCCAGATGTTGTCATCTCTGAGAACTGTTCG
GATGTAATAATAGTTGGACGTGGTGTTTATCAAGCTGACGACAAGTTGAA
AGCCGCCAAGGCGTATCGTCTTGCCGGATGGAAAGCGTATGAAAAGCGTT
GTAGTGGTGTGAAATAG
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protein sequence of Ggra6466.t1

>Ggra6466.t1 ID=Ggra6466.t1|Name=Ggra6466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=489bp
MTVQESKADANERQKNIILKLHEVDAFKFGEFTLKSGIKSPIYIDLRVSI
SYPELLSQIADELLKTVSDSEYDIICGVPYTALPFATAMSLASTKPMVMR
RKEVKNYGTKKIIEGKFLKDQTCLVVEDLVTSGLSVQETVEPLTKEGLLV
KDVVVLLDRQQGARENLKSRGLNLHSAFTLTAVLDVLLENQRIEKDVKDM
VLKFIKENQVSQNLKSSSVVPTTSVSYEEKAAKMENPVGRRLLELMATKK
TNLAVSADVTTKAELFELAEAVGPEICLLKTHADIVEDWDRDTGTALTEI
AKRLNFLLFEDRKFADIGNTVHHQAVGGVHTICKWADIINAHSVPGPGVI
SGLEKAHESVRESKERPMGLLLLAEMSSKGNLASDLSDYRTKTIEMGKEA
KRFVFGFISMGKVADDSFVYMTPGVKLAPGVDGLGQQYLTPDVVISENCS
DVIIVGRGVYQADDKLKAAKAYRLAGWKAYEKRCSGVK*
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mRNA from alignment at tig00000074_pilon:196126..197592+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6466.t1 ID=Ggra6466.t1|Name=Ggra6466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00000074_pilon:196126..197592+ (Gracilaria gracilis GNS1m male)
ATGACTGTGCAAGAATCTAAAGCCGATGCGAATGAACGGCAAAAGAACAT
AATTCTTAAACTTCATGAAGTAGATGCTTTCAAGTTTGGAGAATTCACCC
TCAAGTCTGGGATAAAGTCCCCTATCTACATTGACTTACGAGTCTCTATT
TCATATCCAGAACTGCTGTCTCAGATAGCCGATGAGCTTCTGAAAACCGT
CTCCGACTCTGAGTATGATATAATTTGTGGGGTGCCTTACACGGCGCTTC
CATTTGCTACTGCAATGAGTCTCGCGTCCACAAAACCCATGGTTATGCGA
CGAAAAGAAGTGAAGAATTACGGTACTAAGAAAATTATAGAAGGGAAGTT
CCTCAAAGACCAGACTTGTCTCGTCGTCGAAGACTTAGTAACAAGCGGGC
TAAGTGTACAGGAGACTGTAGAACCTCTTACAAAGGAAGGCTTGCTTGTG
AAGGATGTGGTAGTGCTCCTCGACAGACAGCAGGGAGCTCGCGAGAATCT
GAAGTCACGAGGTCTTAACTTGCACTCTGCTTTTACCTTAACTGCAGTTC
TAGATGTTCTGTTGGAAAACCAACGGATAGAAAAGGATGTAAAGGACATG
GTTTTGAAATTTATCAAAGAAAACCAGGTCTCCCAGAATCTAAAGTCTAG
TTCGGTGGTACCCACAACCAGCGTTTCCTATGAGGAAAAAGCTGCGAAGA
TGGAGAATCCGGTTGGCCGTCGTTTATTGGAACTCATGGCTACAAAGAAA
ACAAATCTCGCAGTCTCTGCCGATGTGACTACAAAGGCTGAACTCTTCGA
ATTGGCGGAAGCAGTAGGTCCGGAAATCTGTCTCTTGAAAACCCATGCTG
ACATCGTTGAAGACTGGGATCGTGATACTGGTACTGCTCTAACCGAAATC
GCAAAACGTTTGAACTTCTTGTTGTTTGAGGACAGAAAATTCGCAGATAT
CGGGAATACTGTCCATCATCAAGCAGTTGGCGGTGTCCACACAATTTGCA
AGTGGGCGGACATCATTAATGCGCATTCCGTACCTGGGCCCGGAGTAATC
TCAGGGCTTGAGAAAGCCCATGAATCAGTTCGCGAATCTAAAGAAAGACC
CATGGGTTTGCTCCTGCTGGCGGAAATGAGCAGCAAGGGAAATTTGGCTT
CTGACTTGTCCGATTACCGAACCAAAACTATTGAGATGGGGAAGGAAGCG
AAACGTTTTGTGTTTGGCTTCATAAGTATGGGGAAAGTGGCCGATGACAG
TTTTGTCTATATGACTCCAGGAGTGAAGCTAGCACCTGGAGTTGATGGAC
TCGGACAGCAATACCTGACGCCAGATGTTGTCATCTCTGAGAACTGTTCG
GATGTAATAATAGTTGGACGTGGTGTTTATCAAGCTGACGACAAGTTGAA
AGCCGCCAAGGCGTATCGTCTTGCCGGATGGAAAGCGTATGAAAAGCGTT
GTAGTGGTGTGAAATAG
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Coding sequence (CDS) from alignment at tig00000074_pilon:196126..197592+

>Ggra6466.t1 ID=Ggra6466.t1|Name=Ggra6466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1467bp|location=Sequence derived from alignment at tig00000074_pilon:196126..197592+ (Gracilaria gracilis GNS1m male)
ATGACTGTGCAAGAATCTAAAGCCGATGCGAATGAACGGCAAAAGAACAT
AATTCTTAAACTTCATGAAGTAGATGCTTTCAAGTTTGGAGAATTCACCC
TCAAGTCTGGGATAAAGTCCCCTATCTACATTGACTTACGAGTCTCTATT
TCATATCCAGAACTGCTGTCTCAGATAGCCGATGAGCTTCTGAAAACCGT
CTCCGACTCTGAGTATGATATAATTTGTGGGGTGCCTTACACGGCGCTTC
CATTTGCTACTGCAATGAGTCTCGCGTCCACAAAACCCATGGTTATGCGA
CGAAAAGAAGTGAAGAATTACGGTACTAAGAAAATTATAGAAGGGAAGTT
CCTCAAAGACCAGACTTGTCTCGTCGTCGAAGACTTAGTAACAAGCGGGC
TAAGTGTACAGGAGACTGTAGAACCTCTTACAAAGGAAGGCTTGCTTGTG
AAGGATGTGGTAGTGCTCCTCGACAGACAGCAGGGAGCTCGCGAGAATCT
GAAGTCACGAGGTCTTAACTTGCACTCTGCTTTTACCTTAACTGCAGTTC
TAGATGTTCTGTTGGAAAACCAACGGATAGAAAAGGATGTAAAGGACATG
GTTTTGAAATTTATCAAAGAAAACCAGGTCTCCCAGAATCTAAAGTCTAG
TTCGGTGGTACCCACAACCAGCGTTTCCTATGAGGAAAAAGCTGCGAAGA
TGGAGAATCCGGTTGGCCGTCGTTTATTGGAACTCATGGCTACAAAGAAA
ACAAATCTCGCAGTCTCTGCCGATGTGACTACAAAGGCTGAACTCTTCGA
ATTGGCGGAAGCAGTAGGTCCGGAAATCTGTCTCTTGAAAACCCATGCTG
ACATCGTTGAAGACTGGGATCGTGATACTGGTACTGCTCTAACCGAAATC
GCAAAACGTTTGAACTTCTTGTTGTTTGAGGACAGAAAATTCGCAGATAT
CGGGAATACTGTCCATCATCAAGCAGTTGGCGGTGTCCACACAATTTGCA
AGTGGGCGGACATCATTAATGCGCATTCCGTACCTGGGCCCGGAGTAATC
TCAGGGCTTGAGAAAGCCCATGAATCAGTTCGCGAATCTAAAGAAAGACC
CATGGGTTTGCTCCTGCTGGCGGAAATGAGCAGCAAGGGAAATTTGGCTT
CTGACTTGTCCGATTACCGAACCAAAACTATTGAGATGGGGAAGGAAGCG
AAACGTTTTGTGTTTGGCTTCATAAGTATGGGGAAAGTGGCCGATGACAG
TTTTGTCTATATGACTCCAGGAGTGAAGCTAGCACCTGGAGTTGATGGAC
TCGGACAGCAATACCTGACGCCAGATGTTGTCATCTCTGAGAACTGTTCG
GATGTAATAATAGTTGGACGTGGTGTTTATCAAGCTGACGACAAGTTGAA
AGCCGCCAAGGCGTATCGTCTTGCCGGATGGAAAGCGTATGAAAAGCGTT
GTAGTGGTGTGAAATAG
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