Ggra6464.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6464.t1
Unique NameGgra6464.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:187899..188568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S169_150V6.1
Max annot lvl35493|Streptophyta
Evalue2.03e-10
EggNOG OGs2B2D7@1|root,2S0CI@2759|Eukaryota,37UEH@33090|Viridiplantae,3GI13@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6464Ggra6464Gracilaria gracilis GNS1m malegenetig00000074_pilon 187899..188568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1Ggra6464.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 187899..188568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1.start1Ggra6464.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 187899..187901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1.CDS1Ggra6464.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 187899..188312 +
Ggra6464.t1.CDS2Ggra6464.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 188407..188568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1.exon1Ggra6464.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 187899..188312 +
Ggra6464.t1.exon2Ggra6464.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 188407..188568 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1.intron1Ggra6464.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 188313..188406 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6464.t1.stop1Ggra6464.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 188566..188568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6464.t1 ID=Ggra6464.t1|Name=Ggra6464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=192bp
MLPTFVPVVPSRSSVNLVPKNLKSICPPGTCSISRPINRISRHIVRRGTV
SMENDNRSSGNDVPQTSERSPLSYLNAWFKNAMSKRKNLKANVLRNYGIA
AFISYGFFDALTYSISFLISLQAYLAAGKILTWKTLPQVLAVMWGINNFS
RPFRIAGALALAPAVDRRIVKPLRNFIHRLSARKPPSEEKQ*
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spliced messenger RNA

>Ggra6464.t1 ID=Ggra6464.t1|Name=Ggra6464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=576bp|location=Sequence derived from alignment at tig00000074_pilon:187899..188568+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACCAACCTTCGTCCCAGTGGTACCTTCAAGATCTTCCGTTAATTT
AGTTCCGAAGAACTTGAAGTCAATATGTCCCCCGGGAACCTGCTCTATTT
CAAGACCTATTAACCGAATCAGTCGTCATATTGTAAGGCGAGGAACTGTT
TCAATGGAAAACGATAACCGTTCGTCGGGAAATGATGTGCCTCAAACTTC
GGAAAGAAGCCCGCTGTCTTACCTCAATGCATGGTTCAAGAACGCCATGT
CCAAGCGTAAGAACCTCAAAGCCAACGTACTTCGCAACTATGGAATAGCT
GCGTTTATATCTTATGGCTTCTTCGATGCACTTACTTATTCTATCAGCTT
TCTGATTAGCTTACAGGCATACCTCGCTGCGGGGAAGATACTTACATGGA
AAACACTACCACAGGTTCTCGCTGTCATGTGGGGTATTAACAATTTCAGC
CGCCCGTTTCGCATAGCCGGCGCGCTTGCTCTTGCTCCCGCCGTTGATCG
CCGTATTGTGAAACCTTTGCGGAACTTTATCCATCGTCTTAGCGCAAGAA
AGCCACCGTCGGAAGAGAAGCAGTGA
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protein sequence of Ggra6464.t1

>Ggra6464.t1 ID=Ggra6464.t1|Name=Ggra6464.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MLPTFVPVVPSRSSVNLVPKNLKSICPPGTCSISRPINRISRHIVRRGTV
SMENDNRSSGNDVPQTSERSPLSYLNAWFKNAMSKRKNLKANVLRNYGIA
AFISYGFFDALTYSISFLISLQAYLAAGKILTWKTLPQVLAVMWGINNFS
RPFRIAGALALAPAVDRRIVKPLRNFIHRLSARKPPSEEKQ*
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mRNA from alignment at tig00000074_pilon:187899..188568+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6464.t1 ID=Ggra6464.t1|Name=Ggra6464.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=670bp|location=Sequence derived from alignment at tig00000074_pilon:187899..188568+ (Gracilaria gracilis GNS1m male)
ATGTTACCAACCTTCGTCCCAGTGGTACCTTCAAGATCTTCCGTTAATTT
AGTTCCGAAGAACTTGAAGTCAATATGTCCCCCGGGAACCTGCTCTATTT
CAAGACCTATTAACCGAATCAGTCGTCATATTGTAAGGCGAGGAACTGTT
TCAATGGAAAACGATAACCGTTCGTCGGGAAATGATGTGCCTCAAACTTC
GGAAAGAAGCCCGCTGTCTTACCTCAATGCATGGTTCAAGAACGCCATGT
CCAAGCGTAAGAACCTCAAAGCCAACGTACTTCGCAACTATGGAATAGCT
GCGTTTATATCTTATGGCTTCTTCGATGCACTTACTTATTCTATCAGCTT
TCTGATTAGCTTACAGGCATACCTCGCTGCGGGGAAGATACTTACATGGA
AAACACTACCACAGGTACGGCTTTCTTTTCTGAAGAACTACAGGTTCTTA
TTGTTATCATGGAATGCCACATTTCTTCAGTTTTCTTACCTTTTCCCGTA
TTCCTTAGGTTCTCGCTGTCATGTGGGGTATTAACAATTTCAGCCGCCCG
TTTCGCATAGCCGGCGCGCTTGCTCTTGCTCCCGCCGTTGATCGCCGTAT
TGTGAAACCTTTGCGGAACTTTATCCATCGTCTTAGCGCAAGAAAGCCAC
CGTCGGAAGAGAAGCAGTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:187899..188568+

>Ggra6464.t1 ID=Ggra6464.t1|Name=Ggra6464.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=576bp|location=Sequence derived from alignment at tig00000074_pilon:187899..188568+ (Gracilaria gracilis GNS1m male)
ATGTTACCAACCTTCGTCCCAGTGGTACCTTCAAGATCTTCCGTTAATTT
AGTTCCGAAGAACTTGAAGTCAATATGTCCCCCGGGAACCTGCTCTATTT
CAAGACCTATTAACCGAATCAGTCGTCATATTGTAAGGCGAGGAACTGTT
TCAATGGAAAACGATAACCGTTCGTCGGGAAATGATGTGCCTCAAACTTC
GGAAAGAAGCCCGCTGTCTTACCTCAATGCATGGTTCAAGAACGCCATGT
CCAAGCGTAAGAACCTCAAAGCCAACGTACTTCGCAACTATGGAATAGCT
GCGTTTATATCTTATGGCTTCTTCGATGCACTTACTTATTCTATCAGCTT
TCTGATTAGCTTACAGGCATACCTCGCTGCGGGGAAGATACTTACATGGA
AAACACTACCACAGGTTCTCGCTGTCATGTGGGGTATTAACAATTTCAGC
CGCCCGTTTCGCATAGCCGGCGCGCTTGCTCTTGCTCCCGCCGTTGATCG
CCGTATTGTGAAACCTTTGCGGAACTTTATCCATCGTCTTAGCGCAAGAA
AGCCACCGTCGGAAGAGAAGCAGTGA
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