Ggra6457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6457.t1
Unique NameGgra6457.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:173266..174150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06360T0
PFAMsMAGE
Max annot lvl4751|Fungi
GOsGO:0000724,GO:0000725,GO:0000793,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0106068,GO:1901360,GO:1901363,GO:1902494,GO:1990234
Evalue1.83e-11
EggNOG OGsKOG4562@1|root,KOG4562@2759|Eukaryota,3A0G4@33154|Opisthokonta,3P24N@4751|Fungi
DescriptionMelanoma-associated antigen
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6457Ggra6457Gracilaria gracilis GNS1m malegenetig00000074_pilon 173266..174150 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6457.t1.start1Ggra6457.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 173266..173268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6457.t1.CDS1Ggra6457.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 173266..174150 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6457.t1.exon1Ggra6457.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 173266..174150 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6457.t1.stop1Ggra6457.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 174148..174150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6457.t1Ggra6457.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 173266..174150 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6457.t1 ID=Ggra6457.t1|Name=Ggra6457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MGRKRSLSNRTSQSQNIGEDEEMFDVNSSSATGSGYSALTEAQQDEVTKR
ISRTLLFRQHRKRPVRRTDLSAMALKNVPNIRGRARAFNMAFGRAEDIMR
KTFGVEVKEIQKLTKRKAGAQSRSVATASQGYGFGYGAKGYILLSKSEKR
HEVPDILCEIGFLTLIAALIALQPGCRMEEDVLHHTLSKLGVHVREKQGH
KQLNNGNVKELLEHKFIDMWYLEKEKEENVTYYLLGPRLRAELSDDDLLE
FIHAIYKDGPSGHGMLDENGRNEIKARLNDAWGPEGPPDQREEE*
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spliced messenger RNA

>Ggra6457.t1 ID=Ggra6457.t1|Name=Ggra6457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000074_pilon:173266..174150+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCAAGCGTTCTTTGTCAAACCGTACTTCACAGAGCCAGAATAT
TGGGGAAGATGAAGAGATGTTCGATGTAAATAGCTCTTCTGCTACTGGAA
GTGGCTATTCAGCACTAACGGAAGCGCAACAGGACGAAGTTACGAAGCGT
ATATCCAGAACGCTATTGTTTCGGCAGCACAGGAAAAGGCCTGTGCGACG
TACAGACCTCAGCGCAATGGCCCTGAAGAACGTACCAAACATCCGTGGGA
GGGCACGTGCATTTAACATGGCCTTTGGCAGGGCCGAGGATATAATGCGT
AAAACTTTTGGTGTTGAGGTAAAGGAAATCCAGAAACTCACCAAGCGTAA
AGCGGGGGCCCAATCACGTTCGGTCGCAACTGCTTCCCAAGGATATGGTT
TCGGATACGGAGCAAAGGGTTACATTTTGCTCTCAAAGTCCGAGAAACGG
CATGAAGTACCGGATATTTTGTGCGAAATTGGGTTCCTGACCCTCATCGC
AGCTCTTATTGCCCTCCAGCCCGGGTGCAGGATGGAAGAAGACGTCTTGC
ATCACACGCTGAGCAAGTTGGGGGTACATGTCCGTGAAAAACAAGGTCAC
AAGCAGCTAAACAATGGAAATGTGAAGGAATTGCTGGAGCACAAGTTCAT
AGATATGTGGTACTTGGAAAAAGAAAAGGAAGAAAATGTGACGTACTATT
TGCTCGGTCCCAGGCTTCGTGCCGAGTTATCAGATGATGATCTGCTTGAA
TTTATCCACGCCATTTACAAAGACGGTCCAAGCGGACATGGAATGCTTGA
TGAGAACGGGAGGAATGAAATCAAAGCTAGACTCAATGACGCATGGGGTC
CAGAAGGACCTCCAGATCAGAGAGAAGAGGAATAA
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protein sequence of Ggra6457.t1

>Ggra6457.t1 ID=Ggra6457.t1|Name=Ggra6457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MGRKRSLSNRTSQSQNIGEDEEMFDVNSSSATGSGYSALTEAQQDEVTKR
ISRTLLFRQHRKRPVRRTDLSAMALKNVPNIRGRARAFNMAFGRAEDIMR
KTFGVEVKEIQKLTKRKAGAQSRSVATASQGYGFGYGAKGYILLSKSEKR
HEVPDILCEIGFLTLIAALIALQPGCRMEEDVLHHTLSKLGVHVREKQGH
KQLNNGNVKELLEHKFIDMWYLEKEKEENVTYYLLGPRLRAELSDDDLLE
FIHAIYKDGPSGHGMLDENGRNEIKARLNDAWGPEGPPDQREEE*
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mRNA from alignment at tig00000074_pilon:173266..174150+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6457.t1 ID=Ggra6457.t1|Name=Ggra6457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000074_pilon:173266..174150+ (Gracilaria gracilis GNS1m male)
ATGGGTCGCAAGCGTTCTTTGTCAAACCGTACTTCACAGAGCCAGAATAT
TGGGGAAGATGAAGAGATGTTCGATGTAAATAGCTCTTCTGCTACTGGAA
GTGGCTATTCAGCACTAACGGAAGCGCAACAGGACGAAGTTACGAAGCGT
ATATCCAGAACGCTATTGTTTCGGCAGCACAGGAAAAGGCCTGTGCGACG
TACAGACCTCAGCGCAATGGCCCTGAAGAACGTACCAAACATCCGTGGGA
GGGCACGTGCATTTAACATGGCCTTTGGCAGGGCCGAGGATATAATGCGT
AAAACTTTTGGTGTTGAGGTAAAGGAAATCCAGAAACTCACCAAGCGTAA
AGCGGGGGCCCAATCACGTTCGGTCGCAACTGCTTCCCAAGGATATGGTT
TCGGATACGGAGCAAAGGGTTACATTTTGCTCTCAAAGTCCGAGAAACGG
CATGAAGTACCGGATATTTTGTGCGAAATTGGGTTCCTGACCCTCATCGC
AGCTCTTATTGCCCTCCAGCCCGGGTGCAGGATGGAAGAAGACGTCTTGC
ATCACACGCTGAGCAAGTTGGGGGTACATGTCCGTGAAAAACAAGGTCAC
AAGCAGCTAAACAATGGAAATGTGAAGGAATTGCTGGAGCACAAGTTCAT
AGATATGTGGTACTTGGAAAAAGAAAAGGAAGAAAATGTGACGTACTATT
TGCTCGGTCCCAGGCTTCGTGCCGAGTTATCAGATGATGATCTGCTTGAA
TTTATCCACGCCATTTACAAAGACGGTCCAAGCGGACATGGAATGCTTGA
TGAGAACGGGAGGAATGAAATCAAAGCTAGACTCAATGACGCATGGGGTC
CAGAAGGACCTCCAGATCAGAGAGAAGAGGAATAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:173266..174150+

>Ggra6457.t1 ID=Ggra6457.t1|Name=Ggra6457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000074_pilon:173266..174150+ (Gracilaria gracilis GNS1m male)
ATGGGTCGCAAGCGTTCTTTGTCAAACCGTACTTCACAGAGCCAGAATAT
TGGGGAAGATGAAGAGATGTTCGATGTAAATAGCTCTTCTGCTACTGGAA
GTGGCTATTCAGCACTAACGGAAGCGCAACAGGACGAAGTTACGAAGCGT
ATATCCAGAACGCTATTGTTTCGGCAGCACAGGAAAAGGCCTGTGCGACG
TACAGACCTCAGCGCAATGGCCCTGAAGAACGTACCAAACATCCGTGGGA
GGGCACGTGCATTTAACATGGCCTTTGGCAGGGCCGAGGATATAATGCGT
AAAACTTTTGGTGTTGAGGTAAAGGAAATCCAGAAACTCACCAAGCGTAA
AGCGGGGGCCCAATCACGTTCGGTCGCAACTGCTTCCCAAGGATATGGTT
TCGGATACGGAGCAAAGGGTTACATTTTGCTCTCAAAGTCCGAGAAACGG
CATGAAGTACCGGATATTTTGTGCGAAATTGGGTTCCTGACCCTCATCGC
AGCTCTTATTGCCCTCCAGCCCGGGTGCAGGATGGAAGAAGACGTCTTGC
ATCACACGCTGAGCAAGTTGGGGGTACATGTCCGTGAAAAACAAGGTCAC
AAGCAGCTAAACAATGGAAATGTGAAGGAATTGCTGGAGCACAAGTTCAT
AGATATGTGGTACTTGGAAAAAGAAAAGGAAGAAAATGTGACGTACTATT
TGCTCGGTCCCAGGCTTCGTGCCGAGTTATCAGATGATGATCTGCTTGAA
TTTATCCACGCCATTTACAAAGACGGTCCAAGCGGACATGGAATGCTTGA
TGAGAACGGGAGGAATGAAATCAAAGCTAGACTCAATGACGCATGGGGTC
CAGAAGGACCTCCAGATCAGAGAGAAGAGGAATAA
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