Ggra6456.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6456.t1
Unique NameGgra6456.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length92
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:172020..172567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6456Ggra6456Gracilaria gracilis GNS1m malegenetig00000074_pilon 172020..172567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1Ggra6456.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 172020..172567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1.stop1Ggra6456.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 172020..172022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1.CDS1Ggra6456.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 172020..172146 -
Ggra6456.t1.CDS2Ggra6456.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 172270..172325 -
Ggra6456.t1.CDS3Ggra6456.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000074_pilon 172475..172567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1.exon1Ggra6456.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 172020..172146 -
Ggra6456.t1.exon2Ggra6456.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 172270..172325 -
Ggra6456.t1.exon3Ggra6456.t1.exon3Gracilaria gracilis GNS1m maleexontig00000074_pilon 172475..172567 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1.intron1Ggra6456.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 172147..172269 -
Ggra6456.t1.intron2Ggra6456.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000074_pilon 172326..172474 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6456.t1.start1Ggra6456.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 172565..172567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6456.t1 ID=Ggra6456.t1|Name=Ggra6456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=92bp
MALRTTTKPLRRLISGTAMRTEAKKLPFEKPIFESELLDKAAAERESCRR
LDMFGNIAVIVAGLSAIARFGYYAAYGKEGGAKALPTRSGT*
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spliced messenger RNA

>Ggra6456.t1 ID=Ggra6456.t1|Name=Ggra6456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=276bp|location=Sequence derived from alignment at tig00000074_pilon:172020..172567- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTGCGAACAACTACGAAGCCGTTGAGGCGCCTGATATCAGGAAC
TGCAATGCGGACTGAAGCCAAGAAGCTTCCTTTTGAGAAACCTATCTTTG
AGAGCGAACTATTGGACAAGGCTGCCGCCGAAAGAGAATCTTGCAGAAGA
TTAGATATGTTTGGCAATATCGCTGTCATTGTGGCCGGTTTAAGCGCTAT
TGCTCGATTCGGATACTACGCAGCTTACGGAAAAGAAGGCGGTGCGAAAG
CTCTGCCGACGCGAAGTGGGACGTAA
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protein sequence of Ggra6456.t1

>Ggra6456.t1 ID=Ggra6456.t1|Name=Ggra6456.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=92bp
MALRTTTKPLRRLISGTAMRTEAKKLPFEKPIFESELLDKAAAERESCRR
LDMFGNIAVIVAGLSAIARFGYYAAYGKEGGAKALPTRSGT*
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mRNA from alignment at tig00000074_pilon:172020..172567-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6456.t1 ID=Ggra6456.t1|Name=Ggra6456.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=548bp|location=Sequence derived from alignment at tig00000074_pilon:172020..172567- (Gracilaria gracilis GNS1m male)
ATGGCTCTGCGAACAACTACGAAGCCGTTGAGGCGCCTGATATCAGGAAC
TGCAATGCGGACTGAAGCCAAGAAGCTTCCTTTTGAGAAACCTGTACGTT
AATAACAGATTCTTCGAAGAGCTTCGCTGCTTTCATTTGGTGTACATCAG
AAGGGCAGATTTGGAATGAATCTCTCTGCGAAATAGGTCTTCACTATAAA
ACGAAGCGTGTCTGACTGCCTGCCTTTGGATATTGTGTTTAGATCTTTGA
GAGCGAACTATTGGACAAGGCTGCCGCCGAAAGAGAATCTTGCAGAAGGT
AAGATGCCTTTCTTCTTTTTGGATCAAGGAAAAGAGTGCTCCATCTGTAT
CTTATTTCAACTGGGTGCTGACCTGTCCGTGTATATCCAATGGAAACGGT
GGTCTTTGTTGACAACTGCAGATTAGATATGTTTGGCAATATCGCTGTCA
TTGTGGCCGGTTTAAGCGCTATTGCTCGATTCGGATACTACGCAGCTTAC
GGAAAAGAAGGCGGTGCGAAAGCTCTGCCGACGCGAAGTGGGACGTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:172020..172567-

>Ggra6456.t1 ID=Ggra6456.t1|Name=Ggra6456.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=276bp|location=Sequence derived from alignment at tig00000074_pilon:172020..172567- (Gracilaria gracilis GNS1m male)
ATGGCTCTGCGAACAACTACGAAGCCGTTGAGGCGCCTGATATCAGGAAC
TGCAATGCGGACTGAAGCCAAGAAGCTTCCTTTTGAGAAACCTATCTTTG
AGAGCGAACTATTGGACAAGGCTGCCGCCGAAAGAGAATCTTGCAGAAGA
TTAGATATGTTTGGCAATATCGCTGTCATTGTGGCCGGTTTAAGCGCTAT
TGCTCGATTCGGATACTACGCAGCTTACGGAAAAGAAGGCGGTGCGAAAG
CTCTGCCGACGCGAAGTGGGACGTAA
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