Ggra6452.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6452.t1
Unique NameGgra6452.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:163350..164092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6211.A0A068Y3K7
Preferred nameARHGAP1
PFAMsCRAL_TRIO_2,HbrB,RhoGAP
Max annot lvl33208|Metazoa
KEGG koko:K18470,ko:K20411,ko:K20633
KEGG Pathwayko04150,map04150
GOsGO:0000041,GO:0001703,GO:0001726,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003674,GO:0005070,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006996,GO:0007010,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007266,GO:0007275,GO:0007369,GO:0007370,GO:0007444,GO:0007478,GO:0007480,GO:0007552,GO:0007560,GO:0008047,GO:0008104,GO:0008150,GO:0008582,GO:0009653,GO:0009790,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010004,GO:0010008,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0012505,GO:0014066,GO:0014068,GO:0015031,GO:0015682,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0017016,GO:0017137,GO:0019220,GO:0019222,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030029,GO:0030036,GO:0030234,GO:0030334,GO:0030335,GO:0030674,GO:0030695,GO:0031090,GO:0031252,GO:0031267,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031929,GO:0031932,GO:0031982,GO:0032147,GO:0032148,GO:0032231,GO:0032232,GO:0032268,GO:0032270,GO:0032386,GO:0032387,GO:0032501,GO:0032502,GO:0032879,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033216,GO:0033572,GO:0033674,GO:0034220,GO:0034755,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035239,GO:0035295,GO:0035556,GO:0035591,GO:0038201,GO:0038203,GO:0040008,GO:0040012,GO:0040017,GO:0042325,GO:0042327,GO:0042886,GO:0042995,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043408,GO:0043410,GO:0043547,GO:0043549,GO:0044087,GO:0044089,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045859,GO:0045860,GO:0045887,GO:0045927,GO:0045937,GO:0046907,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048598,GO:0048638,GO:0048639,GO:0048646,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051056,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051270,GO:0051272,GO:0051336,GO:0051338,GO:0051345,GO:0051347,GO:0051492,GO:0051493,GO:0051494,GO:0051497,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0055037,GO:0055085,GO:0060090,GO:0060255,GO:0060341,GO:0060429,GO:0060562,GO:0060589,GO:0060627,GO:0065007,GO:0065008,GO:0065009,GO:0070372,GO:0070374,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0080090,GO:0097286,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098706,GO:0098711,GO:0098739,GO:0098772,GO:0098805,GO:0099587,GO:0110020,GO:0110053,GO:0120025,GO:1902531,GO:1902533,GO:1902903,GO:1902904,GO:1904396,GO:1904398,GO:2000026,GO:2000145,GO:2000147,GO:2001135,GO:2001136
Evalue8.1e-11
EggNOG OGsKOG4406@1|root,KOG4406@2759|Eukaryota,38DDC@33154|Opisthokonta,3BCGA@33208|Metazoa,3CRHD@33213|Bilateria
Descriptionnegative regulation of endocytic recycling
COG categoryT
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6452Ggra6452Gracilaria gracilis GNS1m malegenetig00000074_pilon 163350..164092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1Ggra6452.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 163350..164092 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1.stop1Ggra6452.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 163350..163352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1.CDS1Ggra6452.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 163350..163763 -
Ggra6452.t1.CDS2Ggra6452.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000074_pilon 163853..164092 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1.exon1Ggra6452.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 163350..163763 -
Ggra6452.t1.exon2Ggra6452.t1.exon2Gracilaria gracilis GNS1m maleexontig00000074_pilon 163853..164092 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1.intron1Ggra6452.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000074_pilon 163764..163852 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6452.t1.start1Ggra6452.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 164090..164092 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6452.t1 ID=Ggra6452.t1|Name=Ggra6452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MSERALADEPYEREVQQVRNADLSAIDNRGIVTVVRDSDGSLTHDTDGNA
LVMVIPALIPRIGGTVWEQCFQLFVRETVDICDQAYRLIYVHSGFSPPFW
LGWWLIRVRNRLSREHRKNLQAISIVHPSLTLRVIYTLLSTFVSQNVWRK
VHFVDRLEELWLDEVLTQEVAERIIPGGVAMFEEVLVEENEMMREAIVAL
GVPVEPRQLGPVEEDVR*
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spliced messenger RNA

>Ggra6452.t1 ID=Ggra6452.t1|Name=Ggra6452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000074_pilon:163350..164092- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAACGTGCTCTAGCGGATGAACCGTACGAGCGGGAAGTGCAGCA
GGTTAGAAATGCAGATTTAAGCGCTATTGATAACCGCGGCATTGTGACTG
TGGTGAGAGATTCAGATGGATCCCTGACTCATGACACGGATGGAAACGCG
CTAGTTATGGTAATCCCGGCGTTGATCCCGCGCATTGGAGGAACTGTGTG
GGAACAGTGCTTTCAGTTGTTTGTTCGGGAGACTGTAGATATTTGTGATC
AGGCTTATCGACTCATCTACGTACATTCTGGCTTCTCGCCACCGTTCTGG
CTGGGTTGGTGGCTTATTCGAGTGCGAAACAGACTATCAAGAGAGCATCG
GAAAAACTTGCAGGCAATCTCCATCGTCCATCCATCACTGACGCTTCGCG
TAATCTACACGCTTTTGTCCACTTTCGTCTCGCAAAACGTGTGGCGCAAG
GTTCATTTTGTGGACAGGCTTGAGGAGCTTTGGTTGGATGAAGTACTGAC
GCAAGAGGTTGCCGAGCGAATTATTCCGGGCGGCGTTGCTATGTTTGAAG
AGGTTTTAGTCGAGGAGAATGAGATGATGAGGGAGGCGATAGTTGCCCTG
GGCGTTCCTGTGGAACCAAGGCAATTGGGCCCTGTTGAGGAGGACGTACG
GTGA
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protein sequence of Ggra6452.t1

>Ggra6452.t1 ID=Ggra6452.t1|Name=Ggra6452.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MSERALADEPYEREVQQVRNADLSAIDNRGIVTVVRDSDGSLTHDTDGNA
LVMVIPALIPRIGGTVWEQCFQLFVRETVDICDQAYRLIYVHSGFSPPFW
LGWWLIRVRNRLSREHRKNLQAISIVHPSLTLRVIYTLLSTFVSQNVWRK
VHFVDRLEELWLDEVLTQEVAERIIPGGVAMFEEVLVEENEMMREAIVAL
GVPVEPRQLGPVEEDVR*
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mRNA from alignment at tig00000074_pilon:163350..164092-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6452.t1 ID=Ggra6452.t1|Name=Ggra6452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=743bp|location=Sequence derived from alignment at tig00000074_pilon:163350..164092- (Gracilaria gracilis GNS1m male)
ATGAGTGAACGTGCTCTAGCGGATGAACCGTACGAGCGGGAAGTGCAGCA
GGTTAGAAATGCAGATTTAAGCGCTATTGATAACCGCGGCATTGTGACTG
TGGTGAGAGATTCAGATGGATCCCTGACTCATGACACGGATGGAAACGCG
CTAGTTATGGTAATCCCGGCGTTGATCCCGCGCATTGGAGGAACTGTGTG
GGAACAGTGCTTTCAGTTGTTTGTTCGGGAGACTGTAGATGTGCGTTGAG
AAGCTCCGGAAAAGACTTAGATGCCTGTAGAGTTGATGCTAACACCGCTT
TATGTGTATCTATGTTGATGTTTGTGCAGATTTGTGATCAGGCTTATCGA
CTCATCTACGTACATTCTGGCTTCTCGCCACCGTTCTGGCTGGGTTGGTG
GCTTATTCGAGTGCGAAACAGACTATCAAGAGAGCATCGGAAAAACTTGC
AGGCAATCTCCATCGTCCATCCATCACTGACGCTTCGCGTAATCTACACG
CTTTTGTCCACTTTCGTCTCGCAAAACGTGTGGCGCAAGGTTCATTTTGT
GGACAGGCTTGAGGAGCTTTGGTTGGATGAAGTACTGACGCAAGAGGTTG
CCGAGCGAATTATTCCGGGCGGCGTTGCTATGTTTGAAGAGGTTTTAGTC
GAGGAGAATGAGATGATGAGGGAGGCGATAGTTGCCCTGGGCGTTCCTGT
GGAACCAAGGCAATTGGGCCCTGTTGAGGAGGACGTACGGTGA
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Coding sequence (CDS) from alignment at tig00000074_pilon:163350..164092-

>Ggra6452.t1 ID=Ggra6452.t1|Name=Ggra6452.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000074_pilon:163350..164092- (Gracilaria gracilis GNS1m male)
ATGAGTGAACGTGCTCTAGCGGATGAACCGTACGAGCGGGAAGTGCAGCA
GGTTAGAAATGCAGATTTAAGCGCTATTGATAACCGCGGCATTGTGACTG
TGGTGAGAGATTCAGATGGATCCCTGACTCATGACACGGATGGAAACGCG
CTAGTTATGGTAATCCCGGCGTTGATCCCGCGCATTGGAGGAACTGTGTG
GGAACAGTGCTTTCAGTTGTTTGTTCGGGAGACTGTAGATATTTGTGATC
AGGCTTATCGACTCATCTACGTACATTCTGGCTTCTCGCCACCGTTCTGG
CTGGGTTGGTGGCTTATTCGAGTGCGAAACAGACTATCAAGAGAGCATCG
GAAAAACTTGCAGGCAATCTCCATCGTCCATCCATCACTGACGCTTCGCG
TAATCTACACGCTTTTGTCCACTTTCGTCTCGCAAAACGTGTGGCGCAAG
GTTCATTTTGTGGACAGGCTTGAGGAGCTTTGGTTGGATGAAGTACTGAC
GCAAGAGGTTGCCGAGCGAATTATTCCGGGCGGCGTTGCTATGTTTGAAG
AGGTTTTAGTCGAGGAGAATGAGATGATGAGGGAGGCGATAGTTGCCCTG
GGCGTTCCTGTGGAACCAAGGCAATTGGGCCCTGTTGAGGAGGACGTACG
GTGA
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