Ggra6450.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6450.t1
Unique NameGgra6450.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000074_piloncontigtig00000074_pilon:159521..161020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703545.1
PFAMsBranch
Max annot lvl2759|Eukaryota
KEGG koko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG ReactionR05925,R06189
KEGG Pathwayko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG ModuleM00057
GOsGO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue9.79e-65
EggNOG OGsKOG0799@1|root,KOG0799@2759|Eukaryota
EC2.4.1.150,2.4.2.26
Descriptionacetylglucosaminyltransferase activity
COG categoryO
CAZyGT14
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6450Ggra6450Gracilaria gracilis GNS1m malegenetig00000074_pilon 159521..161020 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6450.t1.start1Ggra6450.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000074_pilon 159521..159523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6450.t1.CDS1Ggra6450.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000074_pilon 159521..161020 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6450.t1.exon1Ggra6450.t1.exon1Gracilaria gracilis GNS1m maleexontig00000074_pilon 159521..161020 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6450.t1.stop1Ggra6450.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000074_pilon 161018..161020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6450.t1Ggra6450.t1Gracilaria gracilis GNS1m malepolypeptidetig00000074_pilon 159521..161020 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6450.t1 ID=Ggra6450.t1|Name=Ggra6450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=500bp
MPRRFGGSLSTPRTSSSSVTSTARSSSSEGRSFTLNNPLHLPRPAHGGKI
IVDERQHVPSRAAMRLWMALLFATFLLFQLATVFAAPSPSYFAANLNSSA
RVETTASHVSHGIVQPGQPDYASPEAPTEPKIPPGLENARSIEEPRREAN
IEAAHEKTKSENQGGGGRASAREANIAYFIQISRTTVSHLPRLLKSIYHP
KNAYAIHFDLKVPKHEVQQVVQKLREQIGHTNNLHVMPSELITYRGISML
LNTINAMRMLLEEDDKWDYFINVSGSDYPLISAETQRQLLGEKLGLNYFT
YAPSHTWREMAENRISELWFDESISFRQNASLGELRKLPIRNPLVDTREF
EVTHAEAWMISSRDFCDFVLKGDMARKMLVAFSYAVDSSEHYFASLAWNN
DKFKDTIVTHSMRMIVWTHEGKSSGQHPYDIDERREGGEYRFKSLIDQSV
LLFARKFKDSDSQLMDYIDERAKKKEIIDSARDHLVNKIASRSIRLREV*
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spliced messenger RNA

>Ggra6450.t1 ID=Ggra6450.t1|Name=Ggra6450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000074_pilon:159521..161020+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTCGCTTTGGAGGATCATTATCAACACCCAGGACTTCGTCCTC
CTCTGTGACGTCGACCGCTCGGTCATCTAGTTCTGAGGGACGGTCGTTCA
CTCTCAATAACCCGTTGCATTTGCCTCGTCCTGCACATGGGGGAAAGATT
ATTGTAGATGAAAGGCAGCATGTACCATCTCGAGCAGCAATGCGTCTATG
GATGGCTCTGTTATTCGCGACGTTTCTCCTCTTTCAGCTGGCAACCGTGT
TCGCTGCCCCTTCGCCATCGTACTTCGCTGCAAACTTGAATTCATCCGCT
AGGGTTGAAACAACCGCCTCTCACGTGTCCCATGGAATAGTACAGCCTGG
GCAACCAGATTATGCCAGTCCAGAGGCTCCCACAGAACCCAAGATTCCGC
CCGGTCTTGAAAATGCCAGGTCCATTGAGGAGCCTCGCCGGGAAGCGAAT
ATTGAAGCTGCGCACGAGAAGACCAAGAGTGAGAATCAGGGGGGCGGAGG
AAGGGCTTCCGCTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTC
GTACCACTGTCTCGCATCTGCCACGTCTACTGAAATCTATCTACCATCCC
AAGAATGCATACGCAATTCACTTTGACTTAAAGGTTCCGAAGCACGAGGT
TCAACAAGTTGTTCAAAAGCTCCGTGAGCAAATTGGACATACGAACAATC
TTCACGTAATGCCATCCGAACTCATCACATATCGAGGAATCAGTATGCTC
CTGAACACTATCAATGCAATGCGTATGCTGCTGGAAGAAGATGACAAATG
GGATTACTTCATCAACGTTAGTGGCTCAGATTATCCCTTGATATCTGCTG
AGACTCAGCGCCAGCTTTTGGGTGAAAAACTCGGCTTAAACTATTTCACA
TATGCCCCTAGCCACACCTGGCGAGAAATGGCTGAGAATCGAATCTCTGA
GTTATGGTTCGACGAATCTATTTCCTTCCGGCAGAATGCTTCCCTTGGAG
AGCTTCGGAAGCTTCCAATTCGCAACCCCCTTGTTGACACACGCGAATTT
GAGGTTACGCATGCTGAAGCCTGGATGATTTCCTCACGTGACTTCTGCGA
CTTTGTGCTCAAGGGTGATATGGCTCGCAAAATGCTGGTAGCATTCTCAT
ACGCTGTGGACAGCTCTGAGCACTACTTTGCCAGTCTTGCCTGGAATAAC
GACAAATTCAAGGATACTATCGTCACTCATTCGATGCGCATGATTGTCTG
GACTCATGAAGGTAAATCATCCGGGCAACATCCGTACGACATCGATGAAC
GCCGTGAGGGTGGAGAGTATCGGTTCAAGAGTTTGATCGATCAATCTGTA
CTACTCTTTGCGAGGAAGTTCAAGGATTCTGATTCACAACTGATGGACTA
CATTGACGAACGAGCGAAAAAGAAAGAAATCATAGACTCGGCGAGGGATC
ATTTGGTCAACAAGATTGCAAGTCGGTCTATACGGTTACGAGAAGTTTAA
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protein sequence of Ggra6450.t1

>Ggra6450.t1 ID=Ggra6450.t1|Name=Ggra6450.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=500bp
MPRRFGGSLSTPRTSSSSVTSTARSSSSEGRSFTLNNPLHLPRPAHGGKI
IVDERQHVPSRAAMRLWMALLFATFLLFQLATVFAAPSPSYFAANLNSSA
RVETTASHVSHGIVQPGQPDYASPEAPTEPKIPPGLENARSIEEPRREAN
IEAAHEKTKSENQGGGGRASAREANIAYFIQISRTTVSHLPRLLKSIYHP
KNAYAIHFDLKVPKHEVQQVVQKLREQIGHTNNLHVMPSELITYRGISML
LNTINAMRMLLEEDDKWDYFINVSGSDYPLISAETQRQLLGEKLGLNYFT
YAPSHTWREMAENRISELWFDESISFRQNASLGELRKLPIRNPLVDTREF
EVTHAEAWMISSRDFCDFVLKGDMARKMLVAFSYAVDSSEHYFASLAWNN
DKFKDTIVTHSMRMIVWTHEGKSSGQHPYDIDERREGGEYRFKSLIDQSV
LLFARKFKDSDSQLMDYIDERAKKKEIIDSARDHLVNKIASRSIRLREV*
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mRNA from alignment at tig00000074_pilon:159521..161020+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6450.t1 ID=Ggra6450.t1|Name=Ggra6450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00000074_pilon:159521..161020+ (Gracilaria gracilis GNS1m male)
ATGCCTCGTCGCTTTGGAGGATCATTATCAACACCCAGGACTTCGTCCTC
CTCTGTGACGTCGACCGCTCGGTCATCTAGTTCTGAGGGACGGTCGTTCA
CTCTCAATAACCCGTTGCATTTGCCTCGTCCTGCACATGGGGGAAAGATT
ATTGTAGATGAAAGGCAGCATGTACCATCTCGAGCAGCAATGCGTCTATG
GATGGCTCTGTTATTCGCGACGTTTCTCCTCTTTCAGCTGGCAACCGTGT
TCGCTGCCCCTTCGCCATCGTACTTCGCTGCAAACTTGAATTCATCCGCT
AGGGTTGAAACAACCGCCTCTCACGTGTCCCATGGAATAGTACAGCCTGG
GCAACCAGATTATGCCAGTCCAGAGGCTCCCACAGAACCCAAGATTCCGC
CCGGTCTTGAAAATGCCAGGTCCATTGAGGAGCCTCGCCGGGAAGCGAAT
ATTGAAGCTGCGCACGAGAAGACCAAGAGTGAGAATCAGGGGGGCGGAGG
AAGGGCTTCCGCTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTC
GTACCACTGTCTCGCATCTGCCACGTCTACTGAAATCTATCTACCATCCC
AAGAATGCATACGCAATTCACTTTGACTTAAAGGTTCCGAAGCACGAGGT
TCAACAAGTTGTTCAAAAGCTCCGTGAGCAAATTGGACATACGAACAATC
TTCACGTAATGCCATCCGAACTCATCACATATCGAGGAATCAGTATGCTC
CTGAACACTATCAATGCAATGCGTATGCTGCTGGAAGAAGATGACAAATG
GGATTACTTCATCAACGTTAGTGGCTCAGATTATCCCTTGATATCTGCTG
AGACTCAGCGCCAGCTTTTGGGTGAAAAACTCGGCTTAAACTATTTCACA
TATGCCCCTAGCCACACCTGGCGAGAAATGGCTGAGAATCGAATCTCTGA
GTTATGGTTCGACGAATCTATTTCCTTCCGGCAGAATGCTTCCCTTGGAG
AGCTTCGGAAGCTTCCAATTCGCAACCCCCTTGTTGACACACGCGAATTT
GAGGTTACGCATGCTGAAGCCTGGATGATTTCCTCACGTGACTTCTGCGA
CTTTGTGCTCAAGGGTGATATGGCTCGCAAAATGCTGGTAGCATTCTCAT
ACGCTGTGGACAGCTCTGAGCACTACTTTGCCAGTCTTGCCTGGAATAAC
GACAAATTCAAGGATACTATCGTCACTCATTCGATGCGCATGATTGTCTG
GACTCATGAAGGTAAATCATCCGGGCAACATCCGTACGACATCGATGAAC
GCCGTGAGGGTGGAGAGTATCGGTTCAAGAGTTTGATCGATCAATCTGTA
CTACTCTTTGCGAGGAAGTTCAAGGATTCTGATTCACAACTGATGGACTA
CATTGACGAACGAGCGAAAAAGAAAGAAATCATAGACTCGGCGAGGGATC
ATTTGGTCAACAAGATTGCAAGTCGGTCTATACGGTTACGAGAAGTTTAA
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Coding sequence (CDS) from alignment at tig00000074_pilon:159521..161020+

>Ggra6450.t1 ID=Ggra6450.t1|Name=Ggra6450.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00000074_pilon:159521..161020+ (Gracilaria gracilis GNS1m male)
ATGCCTCGTCGCTTTGGAGGATCATTATCAACACCCAGGACTTCGTCCTC
CTCTGTGACGTCGACCGCTCGGTCATCTAGTTCTGAGGGACGGTCGTTCA
CTCTCAATAACCCGTTGCATTTGCCTCGTCCTGCACATGGGGGAAAGATT
ATTGTAGATGAAAGGCAGCATGTACCATCTCGAGCAGCAATGCGTCTATG
GATGGCTCTGTTATTCGCGACGTTTCTCCTCTTTCAGCTGGCAACCGTGT
TCGCTGCCCCTTCGCCATCGTACTTCGCTGCAAACTTGAATTCATCCGCT
AGGGTTGAAACAACCGCCTCTCACGTGTCCCATGGAATAGTACAGCCTGG
GCAACCAGATTATGCCAGTCCAGAGGCTCCCACAGAACCCAAGATTCCGC
CCGGTCTTGAAAATGCCAGGTCCATTGAGGAGCCTCGCCGGGAAGCGAAT
ATTGAAGCTGCGCACGAGAAGACCAAGAGTGAGAATCAGGGGGGCGGAGG
AAGGGCTTCCGCTCGCGAAGCGAACATCGCCTATTTCATCCAGATTTCTC
GTACCACTGTCTCGCATCTGCCACGTCTACTGAAATCTATCTACCATCCC
AAGAATGCATACGCAATTCACTTTGACTTAAAGGTTCCGAAGCACGAGGT
TCAACAAGTTGTTCAAAAGCTCCGTGAGCAAATTGGACATACGAACAATC
TTCACGTAATGCCATCCGAACTCATCACATATCGAGGAATCAGTATGCTC
CTGAACACTATCAATGCAATGCGTATGCTGCTGGAAGAAGATGACAAATG
GGATTACTTCATCAACGTTAGTGGCTCAGATTATCCCTTGATATCTGCTG
AGACTCAGCGCCAGCTTTTGGGTGAAAAACTCGGCTTAAACTATTTCACA
TATGCCCCTAGCCACACCTGGCGAGAAATGGCTGAGAATCGAATCTCTGA
GTTATGGTTCGACGAATCTATTTCCTTCCGGCAGAATGCTTCCCTTGGAG
AGCTTCGGAAGCTTCCAATTCGCAACCCCCTTGTTGACACACGCGAATTT
GAGGTTACGCATGCTGAAGCCTGGATGATTTCCTCACGTGACTTCTGCGA
CTTTGTGCTCAAGGGTGATATGGCTCGCAAAATGCTGGTAGCATTCTCAT
ACGCTGTGGACAGCTCTGAGCACTACTTTGCCAGTCTTGCCTGGAATAAC
GACAAATTCAAGGATACTATCGTCACTCATTCGATGCGCATGATTGTCTG
GACTCATGAAGGTAAATCATCCGGGCAACATCCGTACGACATCGATGAAC
GCCGTGAGGGTGGAGAGTATCGGTTCAAGAGTTTGATCGATCAATCTGTA
CTACTCTTTGCGAGGAAGTTCAAGGATTCTGATTCACAACTGATGGACTA
CATTGACGAACGAGCGAAAAAGAAAGAAATCATAGACTCGGCGAGGGATC
ATTTGGTCAACAAGATTGCAAGTCGGTCTATACGGTTACGAGAAGTTTAA
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